Wall clock time and date at job start Tue Mar 31 2020 16:45:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30645 * 1 3 3 Si 1.86800 * 120.00030 * 2 1 4 4 H 1.48500 * 109.47105 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47083 * 299.99795 * 3 2 1 6 6 H 1.48498 * 109.47393 * 60.00260 * 3 2 1 7 7 C 1.40305 * 120.00017 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99807 * 189.79368 * 7 2 1 9 9 C 1.40506 * 119.99860 * 9.79954 * 7 2 1 10 10 C 1.44202 * 123.71956 * 23.62509 * 9 7 2 11 11 C 1.32744 * 114.43299 * 180.31006 * 10 9 7 12 12 S 1.75468 * 111.37419 * 359.73722 * 11 10 9 13 13 C 1.39578 * 123.72213 * 203.43559 * 9 7 2 14 14 C 1.46195 * 125.22544 * 359.97438 * 13 9 7 15 15 O 1.21795 * 120.00504 * 359.71408 * 14 13 9 16 16 N 1.34784 * 119.99801 * 179.71712 * 14 13 9 17 17 C 1.40444 * 120.00089 * 179.97438 * 16 14 13 18 18 C 1.35644 * 126.12367 * 0.03141 * 17 16 14 19 19 N 1.35868 * 107.77630 * 179.71361 * 18 17 16 20 20 H 0.97009 * 125.94436 * 180.28697 * 19 18 17 21 21 N 1.40047 * 108.11872 * 0.25647 * 19 18 17 22 22 C 1.31604 * 108.29257 * 0.02562 * 21 19 18 23 23 C 1.48416 * 125.96738 * 179.97438 * 22 21 19 24 24 N 1.34062 * 126.67275 * 179.66294 * 23 22 21 25 25 N 1.28992 * 107.26470 * 179.87397 * 24 23 22 26 26 N 1.28725 * 108.94618 * 0.39538 * 25 24 23 27 27 H 0.97004 * 125.34045 * 179.77600 * 26 25 24 28 28 N 1.28872 * 109.32521 * 359.75039 * 26 25 24 29 29 H 0.97005 * 119.99674 * 0.02562 * 1 2 3 30 30 H 1.07993 * 122.78442 * 0.04644 * 10 9 7 31 31 H 1.08002 * 124.31751 * 179.75340 * 11 10 9 32 32 H 0.97002 * 119.99438 * 0.02562 * 16 14 13 33 33 H 1.08004 * 126.10995 * 359.96822 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2405 1.6177 0.0000 4 1 3.7005 1.3464 -0.0006 5 1 1.8817 2.3964 -1.2125 6 1 1.8818 2.3964 1.2125 7 6 2.0080 -1.2151 0.0005 8 1 3.0762 -1.2218 0.1596 9 6 1.3208 -2.4231 -0.2060 10 6 0.0554 -2.5172 -0.8911 11 6 -0.4324 -3.7488 -0.9767 12 16 0.6383 -4.9147 -0.2196 13 6 1.7895 -3.6649 0.2259 14 6 3.0428 -3.8898 0.9442 15 8 3.7723 -2.9501 1.2052 16 7 3.3910 -5.1372 1.3176 17 6 4.5952 -5.3534 2.0072 18 6 5.4962 -4.4030 2.3604 19 7 6.5148 -5.0197 3.0146 20 1 7.2989 -4.5855 3.3857 21 7 6.2357 -6.3914 3.0606 22 6 5.0865 -6.5996 2.4540 23 6 4.4202 -7.9138 2.2764 24 7 3.2479 -8.1413 1.6671 25 7 3.0270 -9.4109 1.7238 26 7 4.0015 -9.9773 2.3454 27 1 4.0759 -10.9278 2.5247 28 7 4.8632 -9.0838 2.6919 29 1 -0.4850 0.8401 -0.0004 30 1 -0.4552 -1.6565 -1.2970 31 1 -1.3688 -4.0012 -1.4520 32 1 2.8101 -5.8856 1.1094 33 1 5.4159 -3.3445 2.1613 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001581859816.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:45:52 Heat of formation + Delta-G solvation = 192.913322 kcal Electronic energy + Delta-G solvation = -24601.462635 eV Core-core repulsion = 20793.669391 eV Total energy + Delta-G solvation = -3807.793243 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 331.059 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -44.48474 -41.06799 -38.28922 -36.07349 -34.57551 -33.78065 -33.37326 -33.09485 -30.80179 -29.46892 -28.42131 -26.03464 -25.10420 -24.41213 -22.66543 -21.48230 -20.67934 -19.69210 -19.07102 -18.76446 -18.21050 -17.18573 -16.90147 -15.89436 -15.48972 -15.36840 -14.84510 -14.81522 -14.19886 -13.88005 -13.63494 -13.49422 -12.82480 -12.48340 -12.36343 -12.17981 -11.88309 -11.50119 -11.47701 -11.20526 -11.18833 -11.17149 -11.07583 -10.84160 -10.42432 -10.19511 -10.13385 -9.65273 -9.24143 -9.19814 -8.52557 -7.60789 -7.26639 -7.12313 -7.05954 -4.56316 0.93472 1.39019 2.06932 2.12914 2.36603 2.76250 2.92275 2.97310 3.06526 3.14223 3.15603 3.57996 3.64741 3.79970 3.83186 4.07105 4.30256 4.43168 5.08518 5.17376 5.23107 5.42691 5.74299 5.98032 6.06438 6.19851 6.30990 6.62591 6.79644 7.14248 7.19588 7.27728 7.43098 7.47420 7.59092 7.69136 8.10840 8.31561 8.39198 8.55689 8.71195 9.42315 9.81790 Molecular weight = 331.06amu Principal moments of inertia in cm(-1) A = 0.015526 B = 0.003875 C = 0.003123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1803.003618 B = 7223.515175 C = 8964.790852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.773 5.773 2 C 0.067 3.933 3 Si 0.925 3.075 4 H -0.252 1.252 5 H -0.270 1.270 6 H -0.270 1.270 7 C -0.373 4.373 8 H 0.114 0.886 9 C 0.144 3.856 10 C -0.103 4.103 11 C -0.203 4.203 12 S -0.037 6.037 13 C -0.429 4.429 14 C 0.599 3.401 15 O -0.556 6.556 16 N -0.657 5.657 17 C 0.065 3.935 18 C 0.029 3.971 19 N -0.459 5.459 20 H 0.447 0.553 21 N -0.247 5.247 22 C 0.112 3.888 23 C 0.262 3.738 24 N -0.257 5.257 25 N -0.042 5.042 26 N -0.230 5.230 27 H 0.475 0.525 28 N -0.277 5.277 29 H 0.288 0.712 30 H 0.145 0.855 31 H 0.138 0.862 32 H 0.413 0.587 33 H 0.215 0.785 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.837 -9.914 3.026 11.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C -0.156 4.156 3 Si 0.748 3.252 4 H -0.176 1.176 5 H -0.195 1.195 6 H -0.195 1.195 7 C -0.404 4.404 8 H 0.132 0.868 9 C 0.133 3.867 10 C -0.136 4.136 11 C -0.337 4.337 12 S 0.218 5.782 13 C -0.548 4.548 14 C 0.399 3.601 15 O -0.440 6.440 16 N -0.302 5.302 17 C -0.043 4.043 18 C -0.118 4.118 19 N -0.174 5.174 20 H 0.292 0.708 21 N -0.077 5.077 22 C -0.056 4.056 23 C -0.019 4.019 24 N -0.132 5.132 25 N -0.038 5.038 26 N -0.077 5.077 27 H 0.329 0.671 28 N -0.131 5.131 29 H 0.099 0.901 30 H 0.163 0.837 31 H 0.156 0.844 32 H 0.251 0.749 33 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges 6.441 -11.540 3.745 13.736 hybrid contribution -0.095 1.959 -0.229 1.975 sum 6.346 -9.581 3.515 12.017 Atomic orbital electron populations 1.69686 1.08126 1.30387 1.31503 1.26406 0.94949 1.02655 0.91561 0.85957 0.81383 0.79143 0.78720 1.17554 1.19483 1.19517 1.20103 0.97815 0.88749 1.33701 0.86850 1.17921 0.89556 0.91620 0.87654 1.21687 0.96408 0.96097 0.99363 1.25005 1.03354 0.97116 1.08234 1.83008 1.17398 1.13245 1.64556 1.22376 1.04682 0.96065 1.31683 1.16890 0.84997 0.80373 0.77882 1.90472 1.53384 1.41485 1.58659 1.43197 1.19093 1.10989 1.56941 1.17558 0.91836 0.90562 1.04323 1.23330 0.88261 1.00697 0.99540 1.46131 1.20476 1.04329 1.46498 0.70814 1.77365 1.14435 0.94384 1.21469 1.18168 0.94852 0.87549 1.05031 1.22090 0.91060 0.90771 0.98008 1.76058 1.13711 1.05009 1.18443 1.78963 1.11934 1.01596 1.11292 1.47747 1.11625 1.12673 1.35615 0.67053 1.75065 1.17756 0.98244 1.21989 0.90052 0.83739 0.84414 0.74945 0.76904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -18.07 10.82 55.57 0.60 -17.47 16 2 C 0.07 1.56 5.39 -17.28 -0.09 1.46 16 3 Si 0.92 17.68 29.57 -169.99 -5.03 12.65 16 4 H -0.25 -4.91 7.11 56.52 0.40 -4.50 16 5 H -0.27 -4.96 7.11 56.52 0.40 -4.56 16 6 H -0.27 -5.09 7.11 56.52 0.40 -4.69 16 7 C -0.37 -9.61 8.52 -37.95 -0.32 -9.93 16 8 H 0.11 3.01 6.03 -52.49 -0.32 2.69 16 9 C 0.14 3.73 5.67 -106.20 -0.60 3.12 16 10 C -0.10 -2.45 9.04 -39.12 -0.35 -2.81 16 11 C -0.20 -4.37 11.06 28.85 0.32 -4.05 16 12 S -0.04 -0.81 22.25 -107.50 -2.39 -3.21 16 13 C -0.43 -10.72 6.50 -35.89 -0.23 -10.95 16 14 C 0.60 14.40 7.73 -13.06 -0.10 14.30 16 15 O -0.56 -13.82 11.59 5.10 0.06 -13.76 16 16 N -0.66 -13.81 5.46 -11.20 -0.06 -13.87 16 17 C 0.06 1.23 6.92 -83.71 -0.58 0.65 16 18 C 0.03 0.49 10.86 -16.69 -0.18 0.31 16 19 N -0.46 -6.23 7.38 30.68 0.23 -6.00 16 20 H 0.45 4.10 8.96 -182.63 -1.64 2.46 16 21 N -0.25 -3.93 12.73 33.50 0.43 -3.50 16 22 C 0.11 1.94 7.18 -82.64 -0.59 1.35 16 23 C 0.26 4.25 8.24 -156.30 -1.29 2.96 16 24 N -0.26 -4.20 10.96 32.15 0.35 -3.84 16 25 N -0.04 -0.56 13.47 60.35 0.81 0.26 16 26 N -0.23 -2.29 7.90 60.35 0.48 -1.82 16 27 H 0.48 2.09 8.96 -340.36 -3.05 -0.96 16 28 N -0.28 -3.72 12.40 32.17 0.40 -3.32 16 29 H 0.29 6.01 8.29 -40.82 -0.34 5.67 16 30 H 0.15 3.40 6.41 -52.49 -0.34 3.07 16 31 H 0.14 2.51 8.06 -52.49 -0.42 2.08 16 32 H 0.41 8.45 6.24 -40.82 -0.25 8.20 16 33 H 0.21 3.72 5.82 -52.48 -0.31 3.41 16 LS Contribution 311.75 15.07 4.70 4.70 Total: -1.00 -30.98 311.75 -8.92 -39.90 By element: Atomic # 1 Polarization: 18.33 SS G_CDS: -5.46 Total: 12.88 kcal Atomic # 6 Polarization: 0.45 SS G_CDS: -4.03 Total: -3.58 kcal Atomic # 7 Polarization: -52.81 SS G_CDS: 3.23 Total: -49.57 kcal Atomic # 8 Polarization: -13.82 SS G_CDS: 0.06 Total: -13.76 kcal Atomic # 14 Polarization: 17.68 SS G_CDS: -5.03 Total: 12.65 kcal Atomic # 16 Polarization: -0.81 SS G_CDS: -2.39 Total: -3.21 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -30.98 -8.92 -39.90 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001581859816.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 232.811 kcal (2) G-P(sol) polarization free energy of solvation -30.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 201.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.897 kcal (6) G-S(sol) free energy of system = (1) + (5) 192.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds