Wall clock time and date at job start Tue Mar 31 2020 16:45:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30645 * 1 3 3 Si 1.86800 * 120.00030 * 2 1 4 4 H 1.48500 * 109.47105 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47083 * 299.99795 * 3 2 1 6 6 H 1.48498 * 109.47393 * 60.00260 * 3 2 1 7 7 C 1.40305 * 120.00017 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99807 * 189.79368 * 7 2 1 9 9 C 1.40506 * 119.99860 * 9.79954 * 7 2 1 10 10 C 1.44202 * 123.71956 * 23.62509 * 9 7 2 11 11 C 1.32744 * 114.43299 * 180.31006 * 10 9 7 12 12 S 1.75468 * 111.37419 * 359.73722 * 11 10 9 13 13 C 1.39578 * 123.72213 * 203.43559 * 9 7 2 14 14 C 1.46195 * 125.22544 * 359.97438 * 13 9 7 15 15 O 1.21795 * 120.00504 * 359.71408 * 14 13 9 16 16 N 1.34784 * 119.99801 * 179.71712 * 14 13 9 17 17 C 1.40444 * 120.00089 * 179.97438 * 16 14 13 18 18 C 1.35644 * 126.12367 * 0.03141 * 17 16 14 19 19 N 1.35868 * 107.77630 * 179.71361 * 18 17 16 20 20 H 0.97009 * 125.94436 * 180.28697 * 19 18 17 21 21 N 1.40047 * 108.11872 * 0.25647 * 19 18 17 22 22 C 1.31604 * 108.29257 * 0.02562 * 21 19 18 23 23 C 1.48416 * 125.96738 * 179.97438 * 22 21 19 24 24 N 1.34062 * 126.67275 * 179.66294 * 23 22 21 25 25 N 1.28992 * 107.26470 * 179.87397 * 24 23 22 26 26 N 1.28725 * 108.94618 * 0.39538 * 25 24 23 27 27 H 0.97004 * 125.34045 * 179.77600 * 26 25 24 28 28 N 1.28872 * 109.32521 * 359.75039 * 26 25 24 29 29 H 0.97005 * 119.99674 * 0.02562 * 1 2 3 30 30 H 1.07993 * 122.78442 * 0.04644 * 10 9 7 31 31 H 1.08002 * 124.31751 * 179.75340 * 11 10 9 32 32 H 0.97002 * 119.99438 * 0.02562 * 16 14 13 33 33 H 1.08004 * 126.10995 * 359.96822 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2405 1.6177 0.0000 4 1 3.7005 1.3464 -0.0006 5 1 1.8817 2.3964 -1.2125 6 1 1.8818 2.3964 1.2125 7 6 2.0080 -1.2151 0.0005 8 1 3.0762 -1.2218 0.1596 9 6 1.3208 -2.4231 -0.2060 10 6 0.0554 -2.5172 -0.8911 11 6 -0.4324 -3.7488 -0.9767 12 16 0.6383 -4.9147 -0.2196 13 6 1.7895 -3.6649 0.2259 14 6 3.0428 -3.8898 0.9442 15 8 3.7723 -2.9501 1.2052 16 7 3.3910 -5.1372 1.3176 17 6 4.5952 -5.3534 2.0072 18 6 5.4962 -4.4030 2.3604 19 7 6.5148 -5.0197 3.0146 20 1 7.2989 -4.5855 3.3857 21 7 6.2357 -6.3914 3.0606 22 6 5.0865 -6.5996 2.4540 23 6 4.4202 -7.9138 2.2764 24 7 3.2479 -8.1413 1.6671 25 7 3.0270 -9.4109 1.7238 26 7 4.0015 -9.9773 2.3454 27 1 4.0759 -10.9278 2.5247 28 7 4.8632 -9.0838 2.6919 29 1 -0.4850 0.8401 -0.0004 30 1 -0.4552 -1.6565 -1.2970 31 1 -1.3688 -4.0012 -1.4520 32 1 2.8101 -5.8856 1.1094 33 1 5.4159 -3.3445 2.1613 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001581859816.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:45:52 Heat of formation + Delta-G solvation = 169.855640 kcal Electronic energy + Delta-G solvation = -24602.462491 eV Core-core repulsion = 20793.669391 eV Total energy + Delta-G solvation = -3808.793100 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 331.059 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -45.55519 -42.41527 -40.01626 -37.85248 -35.80616 -35.15053 -34.88149 -34.64635 -32.03487 -31.14767 -30.02402 -27.79241 -26.23703 -25.53027 -24.36091 -23.02616 -21.94834 -21.23091 -20.64399 -20.28051 -19.52124 -18.51382 -18.24713 -17.62421 -17.16812 -16.63424 -16.39040 -16.21762 -15.78727 -15.33759 -15.16815 -15.06358 -14.29718 -14.13389 -13.93959 -13.66128 -13.41943 -13.14933 -12.93315 -12.73772 -12.56687 -12.37098 -12.28024 -12.14854 -12.02783 -11.94680 -11.77681 -11.36064 -11.00422 -10.41328 -10.34539 -9.40190 -8.94524 -8.85636 -8.70206 -6.42386 -0.16223 0.21358 0.31256 0.99494 1.23200 1.37965 1.40249 1.41867 1.56144 1.66282 1.75140 1.84617 2.07094 2.21385 2.25782 2.64565 2.80532 3.00053 3.36119 3.80647 3.92010 4.28738 4.37784 4.43471 4.63141 4.78351 4.96922 5.03453 5.31771 5.42638 5.58582 5.61319 5.80589 5.87542 6.13124 6.40550 6.44240 6.60622 6.72822 6.90711 7.04874 7.63965 8.10218 Molecular weight = 331.06amu Principal moments of inertia in cm(-1) A = 0.015526 B = 0.003875 C = 0.003123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1803.003618 B = 7223.515175 C = 8964.790852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.790 5.790 2 C 0.035 3.965 3 Si 0.992 3.008 4 H -0.263 1.263 5 H -0.252 1.252 6 H -0.261 1.261 7 C -0.407 4.407 8 H 0.094 0.906 9 C 0.117 3.883 10 C -0.128 4.128 11 C -0.190 4.190 12 S -0.003 6.003 13 C -0.464 4.464 14 C 0.591 3.409 15 O -0.576 6.576 16 N -0.651 5.651 17 C 0.028 3.972 18 C 0.040 3.960 19 N -0.433 5.433 20 H 0.466 0.534 21 N -0.243 5.243 22 C 0.110 3.890 23 C 0.242 3.758 24 N -0.289 5.289 25 N -0.041 5.041 26 N -0.192 5.192 27 H 0.498 0.502 28 N -0.271 5.271 29 H 0.301 0.699 30 H 0.143 0.857 31 H 0.176 0.824 32 H 0.415 0.585 33 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.064 -10.752 3.367 12.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.414 5.414 2 C -0.186 4.186 3 Si 0.811 3.189 4 H -0.187 1.187 5 H -0.176 1.176 6 H -0.186 1.186 7 C -0.437 4.437 8 H 0.112 0.888 9 C 0.106 3.894 10 C -0.161 4.161 11 C -0.324 4.324 12 S 0.252 5.748 13 C -0.583 4.583 14 C 0.390 3.610 15 O -0.461 6.461 16 N -0.296 5.296 17 C -0.079 4.079 18 C -0.109 4.109 19 N -0.151 5.151 20 H 0.316 0.684 21 N -0.073 5.073 22 C -0.058 4.058 23 C -0.040 4.040 24 N -0.163 5.163 25 N -0.036 5.036 26 N -0.044 5.044 27 H 0.358 0.642 28 N -0.125 5.125 29 H 0.112 0.888 30 H 0.160 0.840 31 H 0.193 0.807 32 H 0.252 0.748 33 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges 6.687 -12.440 4.111 14.710 hybrid contribution -0.125 2.008 -0.266 2.030 sum 6.562 -10.432 3.844 12.910 Atomic orbital electron populations 1.69671 1.08978 1.31975 1.30812 1.27108 0.95750 1.04999 0.90694 0.84996 0.79226 0.75098 0.79555 1.18717 1.17640 1.18596 1.20145 0.97262 0.90311 1.35991 0.88786 1.18345 0.90768 0.92192 0.88133 1.21625 0.96462 0.97047 1.00939 1.25448 1.04097 0.96241 1.06577 1.82751 1.16202 1.11905 1.63896 1.22800 1.05982 0.97239 1.32286 1.16972 0.84916 0.81132 0.78025 1.90444 1.53920 1.42290 1.59463 1.42921 1.19912 1.09878 1.56847 1.17823 0.91912 0.92071 1.06107 1.23159 0.88555 1.00229 0.98969 1.46108 1.20286 1.03541 1.45123 0.68351 1.77336 1.13824 0.95084 1.21037 1.18258 0.94963 0.87736 1.04801 1.22013 0.91523 0.91106 0.99363 1.76038 1.14317 1.06327 1.19600 1.78894 1.12351 1.00810 1.11558 1.47802 1.09966 1.13472 1.33185 0.64160 1.75012 1.18033 0.97876 1.21566 0.88754 0.83961 0.80716 0.74779 0.77577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -37.10 10.82 21.89 0.24 -36.86 16 2 C 0.04 1.66 5.39 85.37 0.46 2.12 16 3 Si 0.99 36.34 29.57 68.60 2.03 38.37 16 4 H -0.26 -10.01 7.11 99.48 0.71 -9.30 16 5 H -0.25 -8.49 7.11 99.48 0.71 -7.78 16 6 H -0.26 -9.15 7.11 99.48 0.71 -8.45 16 7 C -0.41 -21.74 8.52 23.33 0.20 -21.54 16 8 H 0.09 5.26 6.03 -2.91 -0.02 5.25 16 9 C 0.12 6.25 5.67 -20.89 -0.12 6.13 16 10 C -0.13 -6.17 9.04 22.61 0.20 -5.96 16 11 C -0.19 -7.98 11.06 66.65 0.74 -7.24 16 12 S 0.00 -0.14 22.25 -56.49 -1.26 -1.39 16 13 C -0.46 -23.83 6.50 24.66 0.16 -23.67 16 14 C 0.59 29.40 7.73 86.31 0.67 30.07 16 15 O -0.58 -29.86 11.59 -4.65 -0.05 -29.91 16 16 N -0.65 -28.01 5.46 -307.52 -1.68 -29.69 16 17 C 0.03 1.06 6.92 37.89 0.26 1.33 16 18 C 0.04 1.33 10.86 83.47 0.91 2.24 16 19 N -0.43 -11.24 7.38 -56.84 -0.42 -11.66 16 20 H 0.47 7.74 8.96 -213.34 -1.91 5.82 16 21 N -0.24 -7.42 12.73 -47.94 -0.61 -8.03 16 22 C 0.11 3.77 7.18 42.62 0.31 4.07 16 23 C 0.24 7.61 8.24 137.36 1.13 8.75 16 24 N -0.29 -9.23 10.96 -52.20 -0.57 -9.80 16 25 N -0.04 -1.01 13.47 37.02 0.50 -0.52 16 26 N -0.19 -3.38 7.90 37.02 0.29 -3.09 16 27 H 0.50 2.92 8.96 -347.53 -3.12 -0.20 16 28 N -0.27 -6.75 12.40 -52.15 -0.65 -7.40 16 29 H 0.30 12.38 8.29 -92.70 -0.77 11.61 16 30 H 0.14 6.79 6.41 -2.91 -0.02 6.77 16 31 H 0.18 5.90 8.06 -2.91 -0.02 5.88 16 32 H 0.41 17.27 6.24 -92.71 -0.58 16.70 16 33 H 0.21 7.39 5.82 -2.91 -0.02 7.37 16 Total: -1.00 -68.42 311.75 -1.60 -70.02 By element: Atomic # 1 Polarization: 38.00 SS G_CDS: -4.33 Total: 33.67 kcal Atomic # 6 Polarization: -8.64 SS G_CDS: 4.92 Total: -3.72 kcal Atomic # 7 Polarization: -104.14 SS G_CDS: -2.90 Total: -107.04 kcal Atomic # 8 Polarization: -29.86 SS G_CDS: -0.05 Total: -29.91 kcal Atomic # 14 Polarization: 36.34 SS G_CDS: 2.03 Total: 38.37 kcal Atomic # 16 Polarization: -0.14 SS G_CDS: -1.26 Total: -1.39 kcal Total: -68.42 -1.60 -70.02 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001581859816.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 239.873 kcal (2) G-P(sol) polarization free energy of solvation -68.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 171.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.017 kcal (6) G-S(sol) free energy of system = (1) + (5) 169.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds