Wall clock time and date at job start Tue Mar 31 2020 16:10:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38325 * 119.43352 * 2 1 4 4 C 1.38565 * 119.46698 * 179.72836 * 3 2 1 5 5 C 1.50695 * 120.80260 * 179.97438 * 4 3 2 6 6 F 1.39906 * 109.46849 * 359.97438 * 5 4 3 7 7 F 1.39902 * 109.47814 * 119.99503 * 5 4 3 8 8 F 1.39909 * 109.47187 * 239.99863 * 5 4 3 9 9 C 1.39508 * 118.39807 * 359.97438 * 4 3 2 10 10 C 1.48314 * 120.57314 * 180.02562 * 9 4 3 11 11 N 1.34101 * 126.68479 * 0.02571 * 10 9 4 12 12 N 1.28984 * 107.26474 * 179.97438 * 11 10 9 13 13 N 1.28731 * 108.96144 * 359.97438 * 12 11 10 14 14 H 0.96993 * 125.33085 * 180.02562 * 13 12 11 15 15 N 1.28869 * 109.32998 * 359.75450 * 13 12 11 16 16 C 1.40264 * 118.85392 * 0.02562 * 9 4 3 17 17 S 1.76203 * 119.79609 * 179.97438 * 16 9 4 18 18 C 1.76200 * 99.99956 * 180.02562 * 17 16 9 19 19 H 1.07996 * 120.00414 * 0.02562 * 18 17 16 20 20 C 1.38749 * 120.00117 * 180.02562 * 18 17 16 21 21 N 1.31592 * 119.99722 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 119.99979 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47400 * 89.99767 * 22 20 18 24 24 H 1.48502 * 109.46968 * 209.99880 * 22 20 18 25 25 H 1.48498 * 109.47160 * 329.99871 * 22 20 18 26 26 N 1.31829 * 119.43344 * 179.73184 * 2 1 3 27 27 H 1.08993 * 109.47634 * 90.00176 * 1 2 3 28 28 H 1.09004 * 109.47080 * 210.00251 * 1 2 3 29 29 H 1.08999 * 109.47134 * 329.99166 * 1 2 3 30 30 H 1.08003 * 120.26500 * 359.74613 * 3 2 1 31 31 H 0.96998 * 119.99990 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1867 1.2047 0.0000 4 6 3.5724 1.2055 0.0057 5 6 4.3433 2.5003 0.0053 6 9 3.4485 3.5758 -0.0020 7 9 5.1438 2.5670 1.1507 8 9 5.1533 2.5605 -1.1339 9 6 4.2366 -0.0213 0.0119 10 6 5.7187 -0.0767 0.0187 11 7 6.5594 0.9680 0.0203 12 7 7.7590 0.4940 0.0273 13 7 7.7006 -0.7920 0.0307 14 1 8.4656 -1.3882 0.0363 15 7 6.4664 -1.1629 0.0311 16 6 3.4785 -1.2014 0.0115 17 16 4.2918 -2.7645 0.0185 18 6 2.8937 -3.8369 0.0144 19 1 1.8960 -3.4235 0.0086 20 6 3.0745 -5.2125 0.0187 21 7 4.2902 -5.7163 0.0252 22 14 1.5923 -6.3494 0.0136 23 1 1.2068 -6.6540 -1.3877 24 1 1.9338 -7.6111 0.7185 25 1 0.4580 -5.6869 0.7061 26 7 2.1548 -1.1481 0.0054 27 1 -0.3634 0.0000 -1.0276 28 1 -0.3633 -0.8900 0.5139 29 1 -0.3633 0.8899 0.5140 30 1 1.6418 2.1372 -0.0041 31 1 4.4166 -6.6780 0.0279 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001591940545.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:10:52 Heat of formation + Delta-G solvation = 18.988147 kcal Electronic energy + Delta-G solvation = -26169.761408 eV Core-core repulsion = 21780.276711 eV Total energy + Delta-G solvation = -4389.484696 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 331.041 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.73631 -47.30757 -47.10168 -44.02061 -39.67620 -34.52388 -33.59720 -32.82996 -32.50121 -31.67496 -27.71760 -26.29501 -25.81071 -24.49379 -23.53389 -22.30255 -21.16501 -19.01488 -18.32226 -18.03442 -17.89950 -17.47991 -16.75359 -16.24386 -15.79841 -15.15529 -15.02367 -14.30596 -14.03919 -13.98250 -13.89034 -13.61684 -13.50226 -13.30066 -13.14979 -13.06795 -12.48931 -12.32108 -12.20465 -11.90297 -11.71330 -11.28128 -11.25297 -11.13417 -10.99278 -10.69936 -10.67373 -10.25179 -9.98242 -9.33824 -8.98927 -8.78763 -8.63303 -6.95083 -6.63285 -4.31786 0.84140 1.31655 1.53780 2.58628 2.71179 2.77676 3.03035 3.08082 3.13459 3.21004 3.87438 3.95365 3.96044 4.08070 4.38078 4.50719 4.75810 4.80402 4.84047 5.14046 5.36115 5.41703 5.52415 5.72285 5.79166 5.82079 5.97769 6.08938 6.22927 6.29132 6.78030 6.83270 7.41706 8.25096 8.36114 8.52494 8.89006 10.42265 Molecular weight = 331.04amu Principal moments of inertia in cm(-1) A = 0.014308 B = 0.005269 C = 0.003949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1956.418498 B = 5312.930872 C = 7089.536979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.171 3.829 3 C -0.193 4.193 4 C -0.073 4.073 5 C 0.516 3.484 6 F -0.184 7.184 7 F -0.165 7.165 8 F -0.165 7.165 9 C -0.069 4.069 10 C 0.214 3.786 11 N -0.269 5.269 12 N -0.058 5.058 13 N -0.233 5.233 14 H 0.473 0.527 15 N -0.260 5.260 16 C 0.114 3.886 17 S 0.219 5.781 18 C -0.558 4.558 19 H 0.111 0.889 20 C 0.077 3.923 21 N -0.867 5.867 22 Si 0.929 3.071 23 H -0.273 1.273 24 H -0.281 1.281 25 H -0.265 1.265 26 N -0.461 5.461 27 H 0.079 0.921 28 H 0.080 0.920 29 H 0.074 0.926 30 H 0.142 0.858 31 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.178 10.610 -0.030 10.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.021 3.979 3 C -0.222 4.222 4 C -0.085 4.085 5 C 0.462 3.538 6 F -0.165 7.165 7 F -0.146 7.146 8 F -0.146 7.146 9 C -0.088 4.088 10 C -0.065 4.065 11 N -0.144 5.144 12 N -0.053 5.053 13 N -0.079 5.079 14 H 0.327 0.673 15 N -0.112 5.112 16 C -0.135 4.135 17 S 0.478 5.522 18 C -0.706 4.706 19 H 0.129 0.871 20 C -0.133 4.133 21 N -0.500 5.500 22 Si 0.754 3.246 23 H -0.198 1.198 24 H -0.206 1.206 25 H -0.189 1.189 26 N -0.175 5.175 27 H 0.098 0.902 28 H 0.098 0.902 29 H 0.093 0.907 30 H 0.160 0.840 31 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 1.831 9.235 -0.010 9.415 hybrid contribution -1.400 0.023 -0.031 1.400 sum 0.431 9.259 -0.041 9.269 Atomic orbital electron populations 1.20721 0.88665 1.03465 1.03139 1.21419 0.97038 0.87949 0.91483 1.21281 0.91741 1.00100 1.09054 1.20065 0.94808 0.90971 1.02630 1.17960 0.77469 0.83607 0.74782 1.93132 1.68225 1.58786 1.96360 1.93219 1.74636 1.96520 1.50209 1.93221 1.74117 1.96542 1.50713 1.17066 0.85530 0.92756 1.13445 1.23265 0.95570 0.84775 1.02847 1.76154 0.94533 1.25590 1.18084 1.78750 1.17826 0.93406 1.15354 1.47823 1.07528 1.05987 1.46557 0.67336 1.75275 0.90097 1.25138 1.20657 1.24395 0.92170 1.00436 0.96488 1.84153 1.07753 0.86302 1.73955 1.23880 0.96747 0.92943 1.57058 0.87079 1.25194 0.97525 0.97614 0.93008 1.69948 1.20988 1.14089 1.44954 0.85974 0.81085 0.78725 0.78798 1.19827 1.20606 1.18915 1.68167 1.07337 1.27443 1.14568 0.90232 0.90158 0.90723 0.84001 0.91384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.28 10.16 36.00 0.37 -0.91 16 2 C 0.17 2.89 6.78 -82.56 -0.56 2.33 16 3 C -0.19 -3.04 9.11 -39.43 -0.36 -3.40 16 4 C -0.07 -1.29 5.42 -104.03 -0.56 -1.85 16 5 C 0.52 8.59 2.78 36.00 0.10 8.69 16 6 F -0.18 -2.70 16.07 2.25 0.04 -2.66 16 7 F -0.16 -2.87 15.09 2.25 0.03 -2.84 16 8 F -0.16 -2.87 15.10 2.25 0.03 -2.84 16 9 C -0.07 -1.40 5.89 -104.52 -0.62 -2.01 16 10 C 0.21 4.19 7.47 -156.26 -1.17 3.02 16 11 N -0.27 -4.96 7.58 32.14 0.24 -4.72 16 12 N -0.06 -0.94 13.47 60.35 0.81 -0.12 16 13 N -0.23 -3.34 7.90 60.35 0.48 -2.86 16 14 H 0.47 4.37 8.96 -340.36 -3.05 1.32 16 15 N -0.26 -4.80 9.61 32.16 0.31 -4.49 16 16 C 0.11 2.51 6.99 -16.51 -0.12 2.40 16 17 S 0.22 5.28 18.74 -107.50 -2.01 3.26 16 18 C -0.56 -14.63 9.25 30.92 0.29 -14.34 16 19 H 0.11 2.91 6.54 -52.49 -0.34 2.57 16 20 C 0.08 1.98 5.49 -17.47 -0.10 1.89 16 21 N -0.87 -23.08 13.22 55.49 0.73 -22.34 16 22 Si 0.93 19.94 29.55 -169.99 -5.02 14.92 16 23 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 24 H -0.28 -5.90 7.11 56.52 0.40 -5.49 16 25 H -0.26 -5.62 7.11 56.52 0.40 -5.21 16 26 N -0.46 -9.71 8.35 -8.03 -0.07 -9.77 16 27 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 28 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 29 H 0.07 0.71 8.07 -51.93 -0.42 0.29 16 30 H 0.14 1.77 7.26 -52.48 -0.38 1.38 16 31 H 0.28 6.85 8.31 -40.82 -0.34 6.51 16 LS Contribution 300.77 15.07 4.53 4.53 Total: -1.00 -30.24 300.77 -6.79 -37.03 By element: Atomic # 1 Polarization: 1.25 SS G_CDS: -4.17 Total: -2.92 kcal Atomic # 6 Polarization: -1.46 SS G_CDS: -2.73 Total: -4.19 kcal Atomic # 7 Polarization: -46.82 SS G_CDS: 2.51 Total: -44.31 kcal Atomic # 9 Polarization: -8.43 SS G_CDS: 0.10 Total: -8.33 kcal Atomic # 14 Polarization: 19.94 SS G_CDS: -5.02 Total: 14.92 kcal Atomic # 16 Polarization: 5.28 SS G_CDS: -2.01 Total: 3.26 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -30.24 -6.79 -37.03 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001591940545.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.023 kcal (2) G-P(sol) polarization free energy of solvation -30.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.035 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds