Wall clock time and date at job start Tue Mar 31 2020 16:10:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38325 * 119.43352 * 2 1 4 4 C 1.38565 * 119.46698 * 179.72836 * 3 2 1 5 5 C 1.50695 * 120.80260 * 179.97438 * 4 3 2 6 6 F 1.39906 * 109.46849 * 359.97438 * 5 4 3 7 7 F 1.39902 * 109.47814 * 119.99503 * 5 4 3 8 8 F 1.39909 * 109.47187 * 239.99863 * 5 4 3 9 9 C 1.39508 * 118.39807 * 359.97438 * 4 3 2 10 10 C 1.48314 * 120.57314 * 180.02562 * 9 4 3 11 11 N 1.34101 * 126.68479 * 0.02571 * 10 9 4 12 12 N 1.28984 * 107.26474 * 179.97438 * 11 10 9 13 13 N 1.28731 * 108.96144 * 359.97438 * 12 11 10 14 14 H 0.96993 * 125.33085 * 180.02562 * 13 12 11 15 15 N 1.28869 * 109.32998 * 359.75450 * 13 12 11 16 16 C 1.40264 * 118.85392 * 0.02562 * 9 4 3 17 17 S 1.76203 * 119.79609 * 179.97438 * 16 9 4 18 18 C 1.76200 * 99.99956 * 180.02562 * 17 16 9 19 19 H 1.07996 * 120.00414 * 0.02562 * 18 17 16 20 20 C 1.38749 * 120.00117 * 180.02562 * 18 17 16 21 21 N 1.31592 * 119.99722 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 119.99979 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47400 * 89.99767 * 22 20 18 24 24 H 1.48502 * 109.46968 * 209.99880 * 22 20 18 25 25 H 1.48498 * 109.47160 * 329.99871 * 22 20 18 26 26 N 1.31829 * 119.43344 * 179.73184 * 2 1 3 27 27 H 1.08993 * 109.47634 * 90.00176 * 1 2 3 28 28 H 1.09004 * 109.47080 * 210.00251 * 1 2 3 29 29 H 1.08999 * 109.47134 * 329.99166 * 1 2 3 30 30 H 1.08003 * 120.26500 * 359.74613 * 3 2 1 31 31 H 0.96998 * 119.99990 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1867 1.2047 0.0000 4 6 3.5724 1.2055 0.0057 5 6 4.3433 2.5003 0.0053 6 9 3.4485 3.5758 -0.0020 7 9 5.1438 2.5670 1.1507 8 9 5.1533 2.5605 -1.1339 9 6 4.2366 -0.0213 0.0119 10 6 5.7187 -0.0767 0.0187 11 7 6.5594 0.9680 0.0203 12 7 7.7590 0.4940 0.0273 13 7 7.7006 -0.7920 0.0307 14 1 8.4656 -1.3882 0.0363 15 7 6.4664 -1.1629 0.0311 16 6 3.4785 -1.2014 0.0115 17 16 4.2918 -2.7645 0.0185 18 6 2.8937 -3.8369 0.0144 19 1 1.8960 -3.4235 0.0086 20 6 3.0745 -5.2125 0.0187 21 7 4.2902 -5.7163 0.0252 22 14 1.5923 -6.3494 0.0136 23 1 1.2068 -6.6540 -1.3877 24 1 1.9338 -7.6111 0.7185 25 1 0.4580 -5.6869 0.7061 26 7 2.1548 -1.1481 0.0054 27 1 -0.3634 0.0000 -1.0276 28 1 -0.3633 -0.8900 0.5139 29 1 -0.3633 0.8899 0.5140 30 1 1.6418 2.1372 -0.0041 31 1 4.4166 -6.6780 0.0279 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001591940545.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:10:51 Heat of formation + Delta-G solvation = -0.375948 kcal Electronic energy + Delta-G solvation = -26170.601098 eV Core-core repulsion = 21780.276711 eV Total energy + Delta-G solvation = -4390.324387 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 331.041 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -51.05504 -48.59177 -48.46039 -45.40555 -41.17398 -35.93410 -35.01665 -34.67576 -33.96651 -33.01984 -29.03581 -27.86319 -27.47871 -25.88610 -24.95529 -23.73292 -22.56546 -20.36452 -19.94387 -19.36813 -19.32487 -18.94222 -18.13009 -17.71076 -17.22176 -16.92916 -16.69162 -15.69650 -15.36860 -15.30431 -15.23681 -15.03575 -14.92288 -14.64387 -14.52906 -14.50182 -13.77627 -13.63839 -13.48598 -13.32610 -13.05152 -12.97685 -12.85867 -12.78421 -12.36665 -12.13329 -12.10506 -11.92581 -11.52175 -11.05036 -10.59218 -10.50109 -10.13703 -8.70619 -8.49230 -6.24763 -0.60936 -0.14322 0.18801 1.12702 1.24376 1.37179 1.40303 1.43024 1.54417 1.63844 2.16435 2.48394 2.57834 2.68688 2.92035 2.93414 3.11791 3.19935 3.46612 3.68089 3.99298 4.03470 4.17456 4.29416 4.46515 4.60781 4.80284 4.87311 4.99006 5.12828 5.48599 5.56723 5.67376 6.30179 6.86006 6.99380 7.13450 8.57991 Molecular weight = 331.04amu Principal moments of inertia in cm(-1) A = 0.014308 B = 0.005269 C = 0.003949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1956.418498 B = 5312.930872 C = 7089.536979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.163 3.837 3 C -0.159 4.159 4 C -0.086 4.086 5 C 0.525 3.475 6 F -0.167 7.167 7 F -0.170 7.170 8 F -0.170 7.170 9 C -0.076 4.076 10 C 0.198 3.802 11 N -0.280 5.280 12 N -0.048 5.048 13 N -0.205 5.205 14 H 0.492 0.508 15 N -0.277 5.277 16 C 0.113 3.887 17 S 0.150 5.850 18 C -0.575 4.575 19 H 0.101 0.899 20 C 0.029 3.971 21 N -0.903 5.903 22 Si 0.991 3.009 23 H -0.268 1.268 24 H -0.274 1.274 25 H -0.262 1.262 26 N -0.490 5.490 27 H 0.098 0.902 28 H 0.070 0.930 29 H 0.114 0.886 30 H 0.188 0.812 31 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.407 12.826 -0.061 12.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.015 3.985 3 C -0.186 4.186 4 C -0.098 4.098 5 C 0.470 3.530 6 F -0.148 7.148 7 F -0.151 7.151 8 F -0.151 7.151 9 C -0.093 4.093 10 C -0.081 4.081 11 N -0.154 5.154 12 N -0.043 5.043 13 N -0.055 5.055 14 H 0.351 0.649 15 N -0.129 5.129 16 C -0.137 4.137 17 S 0.406 5.594 18 C -0.723 4.723 19 H 0.119 0.881 20 C -0.177 4.177 21 N -0.538 5.538 22 Si 0.813 3.187 23 H -0.193 1.193 24 H -0.199 1.199 25 H -0.186 1.186 26 N -0.205 5.205 27 H 0.116 0.884 28 H 0.089 0.911 29 H 0.132 0.868 30 H 0.205 0.795 31 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 0.231 11.528 -0.041 11.530 hybrid contribution -0.915 -0.280 -0.024 0.957 sum -0.684 11.248 -0.065 11.269 Atomic orbital electron populations 1.20908 0.85079 1.05005 1.04759 1.22270 0.99293 0.87139 0.89844 1.21868 0.91001 1.01501 1.04191 1.20333 0.95851 0.90774 1.02875 1.17710 0.77360 0.83439 0.74469 1.93164 1.67552 1.57842 1.96273 1.93213 1.74843 1.96533 1.50488 1.93215 1.74327 1.96556 1.50988 1.17249 0.86131 0.93087 1.12853 1.23309 0.95726 0.85249 1.03818 1.76139 0.94845 1.25629 1.18801 1.78680 1.17001 0.93786 1.14860 1.47847 1.07286 1.05912 1.44460 0.64892 1.75250 0.91316 1.25539 1.20772 1.24171 0.92905 0.99695 0.96892 1.84094 1.08498 0.88157 1.78657 1.23943 0.96693 0.93748 1.57939 0.88061 1.26026 1.00102 0.98844 0.92750 1.70040 1.22654 1.14272 1.46825 0.85051 0.77826 0.76905 0.78932 1.19265 1.19855 1.18646 1.68150 1.07160 1.29933 1.15223 0.88356 0.91064 0.86774 0.79506 0.91288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.11 10.16 71.24 0.72 -1.39 16 2 C 0.16 5.07 6.78 42.58 0.29 5.36 16 3 C -0.16 -4.39 9.11 22.37 0.20 -4.19 16 4 C -0.09 -2.87 5.42 -19.48 -0.11 -2.97 16 5 C 0.52 16.11 2.78 71.23 0.20 16.31 16 6 F -0.17 -4.25 16.07 44.97 0.72 -3.52 16 7 F -0.17 -5.58 15.09 44.97 0.68 -4.90 16 8 F -0.17 -5.59 15.10 44.97 0.68 -4.91 16 9 C -0.08 -3.02 5.89 -19.80 -0.12 -3.14 16 10 C 0.20 7.74 7.47 137.30 1.03 8.76 16 11 N -0.28 -10.09 7.58 -52.23 -0.40 -10.48 16 12 N -0.05 -1.50 13.47 37.02 0.50 -1.01 16 13 N -0.20 -5.76 7.90 37.02 0.29 -5.47 16 14 H 0.49 8.76 8.96 -347.54 -3.12 5.64 16 15 N -0.28 -10.35 9.61 -52.18 -0.50 -10.85 16 16 C 0.11 5.03 6.99 85.09 0.60 5.63 16 17 S 0.15 7.59 18.74 -56.49 -1.06 6.53 16 18 C -0.58 -31.37 9.25 67.94 0.63 -30.74 16 19 H 0.10 5.50 6.54 -2.91 -0.02 5.48 16 20 C 0.03 1.53 5.49 84.85 0.47 2.00 16 21 N -0.90 -49.99 13.22 21.64 0.29 -49.70 16 22 Si 0.99 41.74 29.55 68.60 2.03 43.77 16 23 H -0.27 -10.89 7.11 99.48 0.71 -10.19 16 24 H -0.27 -11.05 7.11 99.48 0.71 -10.35 16 25 H -0.26 -10.75 7.11 99.48 0.71 -10.05 16 26 N -0.49 -20.51 8.35 -179.31 -1.50 -22.01 16 27 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 28 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 29 H 0.11 1.52 8.07 -2.39 -0.02 1.50 16 30 H 0.19 3.48 7.26 -2.91 -0.02 3.46 16 31 H 0.28 14.27 8.31 -92.71 -0.77 13.50 16 Total: -1.00 -68.27 300.77 3.78 -64.50 By element: Atomic # 1 Polarization: 4.29 SS G_CDS: -1.86 Total: 2.42 kcal Atomic # 6 Polarization: -8.28 SS G_CDS: 3.91 Total: -4.37 kcal Atomic # 7 Polarization: -98.20 SS G_CDS: -1.32 Total: -99.51 kcal Atomic # 9 Polarization: -15.41 SS G_CDS: 2.08 Total: -13.33 kcal Atomic # 14 Polarization: 41.74 SS G_CDS: 2.03 Total: 43.77 kcal Atomic # 16 Polarization: 7.59 SS G_CDS: -1.06 Total: 6.53 kcal Total: -68.27 3.78 -64.50 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001591940545.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.121 kcal (2) G-P(sol) polarization free energy of solvation -68.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds