Wall clock time and date at job start Tue Mar 31 2020 16:27:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 O 1.42100 * 110.54316 * 2 1 4 4 O 1.42099 * 110.54514 * 223.25166 * 2 1 3 5 5 C 1.76201 * 104.44981 * 111.62295 * 2 1 3 6 6 C 1.35170 * 125.60615 * 94.89195 * 5 2 1 7 7 C 1.40329 * 107.12220 * 180.02562 * 6 5 2 8 8 C 1.36665 * 106.70588 * 0.02562 * 7 6 5 9 9 C 1.46515 * 125.99672 * 179.97438 * 8 7 6 10 10 O 1.21751 * 119.99719 * 5.65024 * 9 8 7 11 11 N 1.34770 * 120.00477 * 185.64299 * 9 8 7 12 12 C 1.36849 * 120.00335 * 175.12459 * 11 9 8 13 13 H 1.08003 * 120.00004 * 143.57793 * 12 11 9 14 14 C 1.39022 * 119.99890 * 323.85363 * 12 11 9 15 15 N 1.31383 * 120.00418 * 339.57283 * 14 12 11 16 16 Si 1.86804 * 119.99993 * 159.57053 * 14 12 11 17 17 H 1.48503 * 109.47159 * 65.00276 * 16 14 12 18 18 H 1.48504 * 109.47356 * 185.00234 * 16 14 12 19 19 H 1.48499 * 109.47205 * 305.00381 * 16 14 12 20 20 C 1.46506 * 119.99817 * 355.12879 * 11 9 8 21 21 C 1.53001 * 109.46859 * 276.34612 * 20 11 9 22 22 C 1.50694 * 109.46834 * 180.02562 * 21 20 11 23 23 O 1.20826 * 120.00731 * 359.97438 * 22 21 20 24 24 O 1.34235 * 119.99906 * 179.97438 * 22 21 20 25 25 O 1.33958 * 125.61431 * 275.20649 * 5 2 1 26 26 H 1.08999 * 109.47117 * 308.37924 * 1 2 3 27 27 H 1.09006 * 109.46930 * 68.37151 * 1 2 3 28 28 H 1.08991 * 109.47250 * 188.37304 * 1 2 3 29 29 H 1.07991 * 126.43711 * 0.04309 * 6 5 2 30 30 H 1.08006 * 126.64631 * 180.02562 * 7 6 5 31 31 H 0.96996 * 120.00182 * 185.04163 * 15 14 12 32 32 H 1.08996 * 109.46985 * 36.34076 * 20 11 9 33 33 H 1.09001 * 109.47304 * 156.34397 * 20 11 9 34 34 H 1.09005 * 109.46711 * 299.99684 * 21 20 11 35 35 H 1.08995 * 109.47718 * 59.99918 * 21 20 11 36 36 H 0.96702 * 117.00135 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3126 1.3306 0.0000 4 8 2.3127 -0.9692 -0.9117 5 6 2.2537 -0.6288 1.5862 6 6 2.5408 -1.9189 1.8694 7 6 2.8356 -1.9853 3.2398 8 6 2.7113 -0.7158 3.7303 9 6 2.9248 -0.3050 5.1204 10 8 3.3427 -1.1077 5.9350 11 7 2.6588 0.9612 5.4975 12 6 2.7625 1.3192 6.8142 13 1 3.1317 2.2988 7.0800 14 6 2.3979 0.4200 7.8098 15 7 1.5997 -0.5846 7.5276 16 14 3.0431 0.6401 9.5490 17 1 2.5052 1.9007 10.1208 18 1 2.6104 -0.5074 10.3865 19 1 4.5265 0.7021 9.5226 20 6 2.2585 1.9544 4.4976 21 6 3.5058 2.5391 3.8319 22 6 3.0941 3.5612 2.8039 23 8 1.9233 3.7974 2.6219 24 8 4.0283 4.2092 2.0902 25 8 2.3526 0.0920 2.7110 26 1 -0.3633 0.6380 0.8056 27 1 -0.3633 0.3788 -0.9554 28 1 -0.3633 -1.0166 0.1496 29 1 2.5432 -2.7434 1.1721 30 1 3.1079 -2.8686 3.7985 31 1 1.2867 -1.1691 8.2356 32 1 1.6331 1.4782 3.7426 33 1 1.6976 2.7530 4.9831 34 1 4.1313 3.0153 4.5870 35 1 4.0668 1.7406 3.3464 36 1 3.7158 4.8561 1.4428 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001599767237.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:27:34 Heat of formation + Delta-G solvation = -150.237608 kcal Electronic energy + Delta-G solvation = -27519.233915 eV Core-core repulsion = 23292.373358 eV Total energy + Delta-G solvation = -4226.860557 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 331.070 amu Computer time = 2.01 seconds Orbital eigenvalues (eV) -42.29550 -39.86521 -38.32859 -37.18900 -36.04592 -35.87191 -34.86385 -32.76603 -32.57602 -30.27654 -29.89158 -29.43324 -25.63837 -24.42038 -22.60473 -21.73714 -20.72133 -19.83062 -19.14659 -18.08672 -17.81456 -17.22976 -16.71319 -16.45303 -15.80954 -15.70855 -15.55312 -15.42276 -14.97456 -14.23971 -13.87568 -13.55731 -13.39336 -13.32630 -13.19414 -13.08870 -12.70923 -12.51265 -12.44035 -12.20301 -12.09188 -11.71072 -11.52161 -11.43417 -11.17565 -11.09284 -11.02353 -10.89908 -10.63830 -10.35938 -10.22196 -9.81138 -9.21849 -8.64410 -8.56930 -7.50313 -6.44345 -4.10975 -0.10000 1.20975 2.47571 2.59206 2.60558 3.16629 3.25595 3.25771 3.33530 3.36408 3.76421 4.03369 4.21555 4.38745 4.61186 4.64474 4.90811 5.01310 5.09115 5.35272 5.37388 5.43675 5.50496 5.74491 5.80396 5.94752 6.00823 6.04514 6.27295 6.55808 6.63826 6.82941 7.04370 7.30473 7.87146 8.23516 8.62102 8.78645 9.23542 9.86736 10.62844 Molecular weight = 331.07amu Principal moments of inertia in cm(-1) A = 0.014624 B = 0.004960 C = 0.004012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1914.249236 B = 5644.058416 C = 6977.719544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.647 4.647 2 S 2.534 3.466 3 O -0.923 6.923 4 O -0.928 6.928 5 C -0.600 4.600 6 C -0.083 4.083 7 C -0.195 4.195 8 C 0.042 3.958 9 C 0.509 3.491 10 O -0.506 6.506 11 N -0.421 5.421 12 C -0.337 4.337 13 H 0.095 0.905 14 C 0.062 3.938 15 N -0.804 5.804 16 Si 0.926 3.074 17 H -0.275 1.275 18 H -0.283 1.283 19 H -0.270 1.270 20 C 0.108 3.892 21 C -0.129 4.129 22 C 0.491 3.509 23 O -0.516 6.516 24 O -0.519 6.519 25 O -0.113 6.113 26 H 0.138 0.862 27 H 0.133 0.867 28 H 0.133 0.867 29 H 0.163 0.837 30 H 0.161 0.839 31 H 0.273 0.727 32 H 0.082 0.918 33 H 0.089 0.911 34 H 0.109 0.891 35 H 0.101 0.899 36 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.921 2.684 -12.490 12.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.798 4.798 2 S 2.708 3.292 3 O -0.920 6.920 4 O -0.926 6.926 5 C -0.732 4.732 6 C -0.104 4.104 7 C -0.216 4.216 8 C -0.016 4.016 9 C 0.296 3.704 10 O -0.385 6.385 11 N -0.140 5.140 12 C -0.464 4.464 13 H 0.112 0.888 14 C -0.152 4.152 15 N -0.438 5.438 16 Si 0.752 3.248 17 H -0.201 1.201 18 H -0.208 1.208 19 H -0.195 1.195 20 C -0.016 4.016 21 C -0.168 4.168 22 C 0.333 3.667 23 O -0.404 6.404 24 O -0.330 6.330 25 O -0.008 6.008 26 H 0.156 0.844 27 H 0.152 0.848 28 H 0.152 0.848 29 H 0.181 0.819 30 H 0.179 0.821 31 H 0.083 0.917 32 H 0.099 0.901 33 H 0.107 0.893 34 H 0.127 0.873 35 H 0.119 0.881 36 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges -1.427 2.421 -12.329 12.645 hybrid contribution -0.522 -0.205 0.944 1.098 sum -1.949 2.216 -11.385 11.762 Atomic orbital electron populations 1.30210 1.25069 1.12389 1.12133 1.04609 0.78050 0.74375 0.72136 1.93596 1.77293 1.35900 1.85253 1.93607 1.78122 1.62573 1.58258 1.35096 1.26569 1.01771 1.09745 1.21763 0.96690 0.95397 0.96537 1.21935 1.07881 0.97920 0.93908 1.24108 0.97629 0.90217 0.89681 1.16220 0.86970 0.84996 0.82173 1.90730 1.47791 1.51338 1.48598 1.43336 1.57069 1.06910 1.06643 1.19286 1.45139 1.02487 0.79444 0.88765 1.25297 0.94465 0.95244 1.00170 1.69836 1.25122 1.14375 1.34418 0.86041 0.79926 0.77620 0.81261 1.20088 1.20845 1.19497 1.21608 0.93673 0.93978 0.92353 1.21864 1.02201 0.96691 0.96019 1.23360 0.83541 0.79855 0.79942 1.90662 1.19785 1.63848 1.66096 1.84536 1.42775 1.54126 1.51609 1.84514 1.66205 1.35799 1.14241 0.84354 0.84824 0.84827 0.81946 0.82115 0.91686 0.90064 0.89271 0.87328 0.88056 0.73726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 42. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 -5.18 10.80 101.05 1.09 -4.09 16 2 S 2.53 31.20 5.95 -107.50 -0.64 30.56 16 3 O -0.92 -14.42 17.95 -57.86 -1.04 -15.45 16 4 O -0.93 -12.91 17.66 -57.54 -1.02 -13.92 16 5 C -0.60 -9.48 6.99 29.64 0.21 -9.28 16 6 C -0.08 -1.29 10.46 -39.89 -0.42 -1.71 16 7 C -0.19 -3.66 10.63 -39.36 -0.42 -4.08 16 8 C 0.04 0.89 6.60 -36.82 -0.24 0.64 16 9 C 0.51 12.76 6.78 -12.93 -0.09 12.67 16 10 O -0.51 -14.35 14.20 5.14 0.07 -14.28 16 11 N -0.42 -10.10 2.57 -116.35 -0.30 -10.40 16 12 C -0.34 -8.56 9.28 -15.02 -0.14 -8.70 16 13 H 0.09 2.21 7.91 -52.48 -0.42 1.80 16 14 C 0.06 1.61 4.32 -17.45 -0.08 1.53 16 15 N -0.80 -22.34 11.27 55.50 0.63 -21.71 16 16 Si 0.93 20.32 29.60 -169.99 -5.03 15.29 16 17 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 18 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 19 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 20 C 0.11 2.17 4.25 -4.04 -0.02 2.15 16 21 C -0.13 -2.24 5.68 -27.89 -0.16 -2.40 16 22 C 0.49 8.13 8.33 36.00 0.30 8.43 16 23 O -0.52 -9.54 16.74 -18.75 -0.31 -9.85 16 24 O -0.52 -7.11 13.42 -39.27 -0.53 -7.63 16 25 O -0.11 -2.14 6.23 4.92 0.03 -2.10 16 26 H 0.14 1.12 8.14 -51.92 -0.42 0.70 16 27 H 0.13 0.73 8.14 -51.92 -0.42 0.31 16 28 H 0.13 0.84 8.14 -51.93 -0.42 0.41 16 29 H 0.16 1.95 8.06 -52.49 -0.42 1.53 16 30 H 0.16 2.90 8.06 -52.48 -0.42 2.47 16 31 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 32 H 0.08 1.63 5.24 -51.93 -0.27 1.36 16 33 H 0.09 1.75 7.95 -51.93 -0.41 1.34 16 34 H 0.11 1.74 8.14 -51.93 -0.42 1.32 16 35 H 0.10 1.80 7.23 -51.93 -0.38 1.42 16 36 H 0.40 3.71 9.10 45.56 0.41 4.13 16 LS Contribution 335.45 15.07 5.06 5.06 Total: -1.00 -36.61 335.45 -5.77 -42.38 By element: Atomic # 1 Polarization: 9.62 SS G_CDS: -2.73 Total: 6.89 kcal Atomic # 6 Polarization: -4.86 SS G_CDS: 0.04 Total: -4.82 kcal Atomic # 7 Polarization: -32.44 SS G_CDS: 0.33 Total: -32.11 kcal Atomic # 8 Polarization: -60.45 SS G_CDS: -2.79 Total: -63.25 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.03 Total: 15.29 kcal Atomic # 16 Polarization: 31.20 SS G_CDS: -0.64 Total: 30.56 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -36.61 -5.77 -42.38 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599767237.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.856 kcal (2) G-P(sol) polarization free energy of solvation -36.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.01 seconds