Wall clock time and date at job start Tue Mar 31 2020 16:27:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 O 1.42100 * 110.54316 * 2 1 4 4 O 1.42099 * 110.54514 * 223.25166 * 2 1 3 5 5 C 1.76201 * 104.44981 * 111.62295 * 2 1 3 6 6 C 1.35170 * 125.60615 * 94.89195 * 5 2 1 7 7 C 1.40329 * 107.12220 * 180.02562 * 6 5 2 8 8 C 1.36665 * 106.70588 * 0.02562 * 7 6 5 9 9 C 1.46515 * 125.99672 * 179.97438 * 8 7 6 10 10 O 1.21751 * 119.99719 * 5.65024 * 9 8 7 11 11 N 1.34770 * 120.00477 * 185.64299 * 9 8 7 12 12 C 1.36849 * 120.00335 * 175.12459 * 11 9 8 13 13 H 1.08003 * 120.00004 * 143.57793 * 12 11 9 14 14 C 1.39022 * 119.99890 * 323.85363 * 12 11 9 15 15 N 1.31383 * 120.00418 * 339.57283 * 14 12 11 16 16 Si 1.86804 * 119.99993 * 159.57053 * 14 12 11 17 17 H 1.48503 * 109.47159 * 65.00276 * 16 14 12 18 18 H 1.48504 * 109.47356 * 185.00234 * 16 14 12 19 19 H 1.48499 * 109.47205 * 305.00381 * 16 14 12 20 20 C 1.46506 * 119.99817 * 355.12879 * 11 9 8 21 21 C 1.53001 * 109.46859 * 276.34612 * 20 11 9 22 22 C 1.50694 * 109.46834 * 180.02562 * 21 20 11 23 23 O 1.20826 * 120.00731 * 359.97438 * 22 21 20 24 24 O 1.34235 * 119.99906 * 179.97438 * 22 21 20 25 25 O 1.33958 * 125.61431 * 275.20649 * 5 2 1 26 26 H 1.08999 * 109.47117 * 308.37924 * 1 2 3 27 27 H 1.09006 * 109.46930 * 68.37151 * 1 2 3 28 28 H 1.08991 * 109.47250 * 188.37304 * 1 2 3 29 29 H 1.07991 * 126.43711 * 0.04309 * 6 5 2 30 30 H 1.08006 * 126.64631 * 180.02562 * 7 6 5 31 31 H 0.96996 * 120.00182 * 185.04163 * 15 14 12 32 32 H 1.08996 * 109.46985 * 36.34076 * 20 11 9 33 33 H 1.09001 * 109.47304 * 156.34397 * 20 11 9 34 34 H 1.09005 * 109.46711 * 299.99684 * 21 20 11 35 35 H 1.08995 * 109.47718 * 59.99918 * 21 20 11 36 36 H 0.96702 * 117.00135 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3126 1.3306 0.0000 4 8 2.3127 -0.9692 -0.9117 5 6 2.2537 -0.6288 1.5862 6 6 2.5408 -1.9189 1.8694 7 6 2.8356 -1.9853 3.2398 8 6 2.7113 -0.7158 3.7303 9 6 2.9248 -0.3050 5.1204 10 8 3.3427 -1.1077 5.9350 11 7 2.6588 0.9612 5.4975 12 6 2.7625 1.3192 6.8142 13 1 3.1317 2.2988 7.0800 14 6 2.3979 0.4200 7.8098 15 7 1.5997 -0.5846 7.5276 16 14 3.0431 0.6401 9.5490 17 1 2.5052 1.9007 10.1208 18 1 2.6104 -0.5074 10.3865 19 1 4.5265 0.7021 9.5226 20 6 2.2585 1.9544 4.4976 21 6 3.5058 2.5391 3.8319 22 6 3.0941 3.5612 2.8039 23 8 1.9233 3.7974 2.6219 24 8 4.0283 4.2092 2.0902 25 8 2.3526 0.0920 2.7110 26 1 -0.3633 0.6380 0.8056 27 1 -0.3633 0.3788 -0.9554 28 1 -0.3633 -1.0166 0.1496 29 1 2.5432 -2.7434 1.1721 30 1 3.1079 -2.8686 3.7985 31 1 1.2867 -1.1691 8.2356 32 1 1.6331 1.4782 3.7426 33 1 1.6976 2.7530 4.9831 34 1 4.1313 3.0153 4.5870 35 1 4.0668 1.7406 3.3464 36 1 3.7158 4.8561 1.4428 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001599767237.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:27:33 Heat of formation + Delta-G solvation = -179.864973 kcal Electronic energy + Delta-G solvation = -27520.518654 eV Core-core repulsion = 23292.373358 eV Total energy + Delta-G solvation = -4228.145296 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 331.070 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.75484 -41.20105 -40.12221 -38.26107 -37.19429 -37.12617 -36.59298 -34.46397 -34.15319 -31.88965 -31.23397 -30.31552 -27.42749 -25.98842 -24.15549 -23.14681 -22.11049 -21.45571 -20.32696 -19.51135 -19.17019 -18.69749 -18.15613 -17.71772 -17.07112 -16.97610 -16.85819 -16.80313 -16.76317 -15.98641 -15.30416 -15.11795 -14.75260 -14.57024 -14.20122 -14.11543 -14.01662 -13.97529 -13.88657 -13.36819 -13.29902 -13.24957 -13.17071 -12.82442 -12.74758 -12.64911 -12.43779 -12.23433 -12.05550 -12.00585 -11.59201 -11.19528 -11.07229 -10.57080 -10.06969 -9.41380 -8.37026 -6.08822 -1.05828 -0.22615 1.05974 1.28171 1.38424 1.44757 1.50467 1.54443 1.92884 2.05339 2.29452 2.57610 2.82598 2.96483 3.14567 3.28066 3.77724 3.81779 3.89357 3.97403 4.07794 4.17372 4.34794 4.42618 4.48158 4.63174 4.67875 4.73705 4.93572 5.04978 5.17541 5.35910 5.60068 5.67820 5.99456 6.73992 6.92019 7.06874 7.36000 7.99979 8.71770 Molecular weight = 331.07amu Principal moments of inertia in cm(-1) A = 0.014624 B = 0.004960 C = 0.004012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1914.249236 B = 5644.058416 C = 6977.719544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.620 4.620 2 S 2.537 3.463 3 O -0.958 6.958 4 O -0.942 6.942 5 C -0.586 4.586 6 C -0.082 4.082 7 C -0.188 4.188 8 C -0.003 4.003 9 C 0.506 3.494 10 O -0.554 6.554 11 N -0.433 5.433 12 C -0.361 4.361 13 H 0.106 0.894 14 C 0.015 3.985 15 N -0.850 5.850 16 Si 0.987 3.013 17 H -0.254 1.254 18 H -0.288 1.288 19 H -0.274 1.274 20 C 0.111 3.889 21 C -0.124 4.124 22 C 0.500 3.500 23 O -0.537 6.537 24 O -0.511 6.511 25 O -0.118 6.118 26 H 0.143 0.857 27 H 0.170 0.830 28 H 0.161 0.839 29 H 0.203 0.797 30 H 0.161 0.839 31 H 0.268 0.732 32 H 0.080 0.920 33 H 0.088 0.912 34 H 0.120 0.880 35 H 0.096 0.904 36 H 0.427 0.573 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.702 3.274 -14.822 15.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.775 4.775 2 S 2.712 3.288 3 O -0.955 6.955 4 O -0.940 6.940 5 C -0.714 4.714 6 C -0.102 4.102 7 C -0.209 4.209 8 C -0.060 4.060 9 C 0.294 3.706 10 O -0.436 6.436 11 N -0.151 5.151 12 C -0.488 4.488 13 H 0.124 0.876 14 C -0.194 4.194 15 N -0.484 5.484 16 Si 0.810 3.190 17 H -0.178 1.178 18 H -0.214 1.214 19 H -0.199 1.199 20 C -0.012 4.012 21 C -0.162 4.162 22 C 0.343 3.657 23 O -0.427 6.427 24 O -0.324 6.324 25 O -0.012 6.012 26 H 0.162 0.838 27 H 0.188 0.812 28 H 0.179 0.821 29 H 0.220 0.780 30 H 0.179 0.821 31 H 0.078 0.922 32 H 0.098 0.902 33 H 0.107 0.893 34 H 0.138 0.862 35 H 0.114 0.886 36 H 0.289 0.711 Dipole moment (debyes) X Y Z Total from point charges -2.148 3.056 -14.647 15.116 hybrid contribution -0.326 -0.378 1.297 1.389 sum -2.473 2.678 -13.351 13.839 Atomic orbital electron populations 1.30034 1.18151 1.14742 1.14530 1.04834 0.80475 0.73075 0.70427 1.93556 1.79792 1.37219 1.84939 1.93585 1.80176 1.62593 1.57629 1.36169 1.23637 1.01895 1.09712 1.22143 0.96010 0.96558 0.95456 1.22189 1.06111 0.97016 0.95586 1.23451 1.02009 0.91413 0.89132 1.16659 0.85714 0.84813 0.83369 1.90668 1.49618 1.52558 1.50725 1.43481 1.57102 1.07482 1.07044 1.19672 1.45598 1.03087 0.80407 0.87596 1.26191 0.94273 0.94941 1.03993 1.69949 1.27291 1.15943 1.35208 0.85108 0.78836 0.78114 0.76922 1.17789 1.21357 1.19890 1.21607 0.94930 0.93086 0.91600 1.21679 1.00899 0.97010 0.96655 1.22986 0.83355 0.79611 0.79757 1.90657 1.20611 1.64633 1.66789 1.84469 1.41789 1.54376 1.51781 1.84464 1.66246 1.35945 1.14593 0.83810 0.81166 0.82098 0.78025 0.82087 0.92233 0.90216 0.89321 0.86153 0.88605 0.71117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.62 -6.80 10.80 113.37 1.22 -5.57 16 2 S 2.54 55.02 5.95 -56.49 -0.34 54.68 16 3 O -0.96 -28.02 17.95 -127.34 -2.29 -30.30 16 4 O -0.94 -23.26 17.66 -127.65 -2.25 -25.51 16 5 C -0.59 -17.43 6.99 67.11 0.47 -16.97 16 6 C -0.08 -2.37 10.46 22.07 0.23 -2.14 16 7 C -0.19 -7.03 10.63 22.41 0.24 -6.79 16 8 C 0.00 -0.15 6.60 24.06 0.16 0.01 16 9 C 0.51 26.44 6.78 86.40 0.59 27.03 16 10 O -0.55 -33.03 14.20 -4.51 -0.06 -33.09 16 11 N -0.43 -21.51 2.57 -640.22 -1.64 -23.15 16 12 C -0.36 -18.89 9.28 84.10 0.78 -18.11 16 13 H 0.11 5.06 7.91 -2.91 -0.02 5.04 16 14 C 0.01 0.79 4.32 84.95 0.37 1.16 16 15 N -0.85 -49.32 11.27 21.68 0.24 -49.08 16 16 Si 0.99 42.79 29.60 68.60 2.03 44.82 16 17 H -0.25 -9.98 7.11 99.48 0.71 -9.28 16 18 H -0.29 -12.54 7.11 99.48 0.71 -11.83 16 19 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 20 C 0.11 4.54 4.25 86.38 0.37 4.90 16 21 C -0.12 -4.28 5.68 29.85 0.17 -4.12 16 22 C 0.50 15.98 8.33 71.23 0.59 16.57 16 23 O -0.54 -19.23 16.74 21.96 0.37 -18.86 16 24 O -0.51 -12.92 13.42 -51.47 -0.69 -13.61 16 25 O -0.12 -4.40 6.23 -5.32 -0.03 -4.44 16 26 H 0.14 1.67 8.14 -2.39 -0.02 1.65 16 27 H 0.17 0.82 8.14 -2.39 -0.02 0.80 16 28 H 0.16 1.06 8.14 -2.40 -0.02 1.04 16 29 H 0.20 4.11 8.06 -2.92 -0.02 4.08 16 30 H 0.16 5.92 8.06 -2.91 -0.02 5.89 16 31 H 0.27 14.88 8.31 -92.71 -0.77 14.11 16 32 H 0.08 3.26 5.24 -2.39 -0.01 3.24 16 33 H 0.09 3.55 7.95 -2.39 -0.02 3.53 16 34 H 0.12 3.83 8.14 -2.38 -0.02 3.81 16 35 H 0.10 3.43 7.23 -2.39 -0.02 3.42 16 36 H 0.43 6.72 9.10 -74.06 -0.67 6.05 16 Total: -1.00 -83.17 335.45 1.00 -82.17 By element: Atomic # 1 Polarization: 19.92 SS G_CDS: 0.48 Total: 20.40 kcal Atomic # 6 Polarization: -9.21 SS G_CDS: 5.18 Total: -4.02 kcal Atomic # 7 Polarization: -70.83 SS G_CDS: -1.40 Total: -72.23 kcal Atomic # 8 Polarization: -120.85 SS G_CDS: -4.96 Total: -125.81 kcal Atomic # 14 Polarization: 42.79 SS G_CDS: 2.03 Total: 44.82 kcal Atomic # 16 Polarization: 55.02 SS G_CDS: -0.34 Total: 54.68 kcal Total: -83.17 1.00 -82.17 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599767237.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.695 kcal (2) G-P(sol) polarization free energy of solvation -83.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -180.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds