Wall clock time and date at job start Tue Mar 31 2020 16:11:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 O 1.33909 * 125.61277 * 2 1 4 4 C 1.34939 * 109.38017 * 180.12940 * 3 2 1 5 5 C 1.46462 * 125.99377 * 179.88799 * 4 3 2 6 6 O 1.21622 * 119.99925 * 179.69571 * 5 4 3 7 7 O 1.34895 * 120.00322 * 359.69902 * 5 4 3 8 8 C 1.36643 * 108.00503 * 359.63059 * 4 3 2 9 9 C 1.35166 * 125.60438 * 179.71960 * 2 1 3 10 10 S 1.76203 * 126.43886 * 359.97438 * 9 2 1 11 11 O 1.42098 * 106.40547 * 178.81819 * 10 9 2 12 12 O 1.42106 * 106.39946 * 311.73485 * 10 9 2 13 13 N 1.65598 * 107.22007 * 65.27718 * 10 9 2 14 14 C 1.34778 * 120.00083 * 64.88474 * 13 10 9 15 15 O 1.21279 * 119.99580 * 5.17372 * 14 13 10 16 16 C 1.50693 * 120.00212 * 185.17090 * 14 13 10 17 17 H 1.09001 * 109.46991 * 59.99921 * 16 14 13 18 18 C 1.53002 * 109.47294 * 300.00761 * 16 14 13 19 19 C 1.50698 * 109.47572 * 180.02562 * 16 14 13 20 20 H 1.07999 * 119.99456 * 0.02562 * 19 16 14 21 21 C 1.37871 * 120.00178 * 180.02562 * 19 16 14 22 22 N 1.31513 * 120.00069 * 0.02562 * 21 19 16 23 23 Si 1.86804 * 119.99814 * 180.02562 * 21 19 16 24 24 H 1.48494 * 109.47329 * 59.99840 * 23 21 19 25 25 H 1.48501 * 109.47211 * 180.02562 * 23 21 19 26 26 H 1.48503 * 109.46905 * 299.99725 * 23 21 19 27 27 H 1.09001 * 109.46748 * 265.18671 * 1 2 3 28 28 H 1.08998 * 109.46701 * 25.17934 * 1 2 3 29 29 H 1.08995 * 109.47354 * 145.18719 * 1 2 3 30 30 H 0.96706 * 117.00082 * 180.02562 * 7 5 4 31 31 H 1.08002 * 126.64470 * 180.18963 * 8 4 3 32 32 H 0.97009 * 119.99824 * 244.89025 * 13 10 9 33 33 H 1.08995 * 109.47416 * 180.02562 * 18 16 14 34 34 H 1.09004 * 109.46893 * 299.99680 * 18 16 14 35 35 H 1.08999 * 109.47760 * 59.99336 * 18 16 14 36 36 H 0.97010 * 119.99772 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.2868 1.0886 0.0000 4 6 3.5824 0.7114 -0.0029 5 6 4.7401 1.6086 -0.0061 6 8 5.8659 1.1485 -0.0030 7 8 4.5577 2.9451 -0.0126 8 6 3.6247 -0.6543 0.0036 9 6 2.2940 -1.0990 0.0054 10 16 1.7507 -2.7751 0.0142 11 8 2.9235 -3.5772 -0.0102 12 8 0.7641 -2.8718 1.0324 13 7 0.9698 -3.0450 -1.4209 14 6 1.6525 -2.9846 -2.5814 15 8 2.8548 -2.8261 -2.5700 16 6 0.9220 -3.1142 -3.8930 17 1 0.1853 -2.3155 -3.9791 18 6 0.2138 -4.4693 -3.9507 19 6 1.9072 -3.0141 -5.0289 20 1 2.9575 -2.8713 -4.8217 21 6 1.4679 -3.1047 -6.3326 22 7 0.1889 -3.2781 -6.5849 23 14 2.6893 -2.9813 -7.7405 24 1 3.6917 -4.0706 -7.6232 25 1 1.9693 -3.1077 -9.0331 26 1 3.3779 -1.6667 -7.6846 27 1 -0.3633 -0.0862 1.0241 28 1 -0.3632 0.9300 -0.4372 29 1 -0.3634 -0.8437 -0.5867 30 1 5.3521 3.4966 -0.0149 31 1 4.5108 -1.2718 0.0063 32 1 0.0208 -3.2464 -1.4263 33 1 -0.3142 -4.5632 -4.8996 34 1 0.9505 -5.2681 -3.8646 35 1 -0.4988 -4.5422 -3.1292 36 1 -0.1202 -3.3422 -7.5023 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001600834399.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:11:42 Heat of formation + Delta-G solvation = -215.483363 kcal Electronic energy + Delta-G solvation = -26793.864630 eV Core-core repulsion = 22564.174804 eV Total energy + Delta-G solvation = -4229.689826 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 331.070 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -44.25085 -41.18506 -41.02299 -38.50861 -37.41850 -37.21482 -35.90126 -35.44346 -34.96467 -33.50833 -32.36160 -29.10228 -27.19735 -25.28694 -25.10442 -23.69523 -22.43110 -22.04263 -20.88908 -20.08822 -19.07219 -18.88029 -18.32397 -18.10732 -17.88014 -17.20843 -16.89223 -16.65667 -16.56008 -16.25268 -15.92399 -15.32139 -14.88434 -14.66516 -14.58281 -14.44342 -14.03987 -13.87126 -13.57693 -13.43997 -13.42581 -13.27473 -13.01213 -12.87908 -12.77280 -12.70038 -12.62899 -12.32470 -12.24837 -12.04505 -11.96698 -11.86577 -11.05860 -10.83451 -10.45575 -10.19131 -8.15802 -6.25318 -1.02745 -0.55550 0.23266 0.96079 1.26327 1.43110 1.44202 1.47560 1.51968 1.67094 1.90575 2.41879 2.44077 2.93895 3.15106 3.21748 3.45269 3.73709 3.89416 4.07848 4.22670 4.26723 4.32736 4.48341 4.67029 4.77067 4.93653 4.97150 5.01338 5.10951 5.33916 5.47327 5.72132 5.75374 6.01341 6.23528 6.67350 6.75476 6.83526 7.42744 8.89244 Molecular weight = 331.07amu Principal moments of inertia in cm(-1) A = 0.011537 B = 0.004549 C = 0.003744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2426.315257 B = 6153.786246 C = 7476.161379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.192 3.808 3 O -0.136 6.136 4 C -0.093 4.093 5 C 0.585 3.415 6 O -0.517 6.517 7 O -0.492 6.492 8 C -0.020 4.020 9 C -0.797 4.797 10 S 2.723 3.277 11 O -0.968 6.968 12 O -0.939 6.939 13 N -1.041 6.041 14 C 0.544 3.456 15 O -0.524 6.524 16 C 0.027 3.973 17 H 0.071 0.929 18 C -0.133 4.133 19 C -0.536 4.536 20 H 0.051 0.949 21 C 0.029 3.971 22 N -0.903 5.903 23 Si 0.946 3.054 24 H -0.280 1.280 25 H -0.275 1.275 26 H -0.279 1.279 27 H 0.144 0.856 28 H 0.131 0.869 29 H 0.112 0.888 30 H 0.444 0.556 31 H 0.172 0.828 32 H 0.450 0.550 33 H 0.077 0.923 34 H 0.024 0.976 35 H 0.064 0.936 36 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.421 9.962 14.238 17.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.133 3.867 3 O -0.029 6.029 4 C -0.142 4.142 5 C 0.429 3.571 6 O -0.409 6.409 7 O -0.307 6.307 8 C -0.040 4.040 9 C -0.885 4.885 10 S 2.812 3.188 11 O -0.958 6.958 12 O -0.930 6.930 13 N -0.811 5.811 14 C 0.334 3.666 15 O -0.396 6.396 16 C 0.004 3.996 17 H 0.089 0.911 18 C -0.191 4.191 19 C -0.574 4.574 20 H 0.069 0.931 21 C -0.171 4.171 22 N -0.542 5.542 23 Si 0.773 3.227 24 H -0.206 1.206 25 H -0.200 1.200 26 H -0.204 1.204 27 H 0.162 0.838 28 H 0.149 0.851 29 H 0.131 0.869 30 H 0.307 0.693 31 H 0.189 0.811 32 H 0.291 0.709 33 H 0.096 0.904 34 H 0.044 0.956 35 H 0.083 0.917 36 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -3.637 9.489 14.734 17.898 hybrid contribution 1.325 0.651 -1.230 1.922 sum -2.312 10.140 13.504 17.045 Atomic orbital electron populations 1.21450 0.79219 1.08478 1.08425 1.23650 0.96006 0.81517 0.85480 1.84106 1.15504 1.34422 1.68910 1.20764 0.81802 0.92477 1.19149 1.18470 0.84953 0.81570 0.72084 1.91028 1.23808 1.78022 1.48001 1.84598 1.45097 1.16283 1.84725 1.21625 0.97090 0.92919 0.92366 1.31609 1.02060 1.24458 1.30364 1.01114 0.72961 0.72573 0.72126 1.93581 1.50216 1.66262 1.85782 1.93621 1.59734 1.86371 1.53245 1.54834 1.25403 1.78140 1.22732 1.21812 0.87385 0.70808 0.86639 1.90738 1.15793 1.45841 1.87213 1.18992 0.95814 0.98241 0.86556 0.91101 1.21706 0.99056 0.95034 1.03328 1.21255 0.94307 1.50763 0.91124 0.93111 1.25420 0.96775 0.94569 1.00334 1.69895 1.13961 1.49598 1.20708 0.85799 0.79453 0.78428 0.79068 1.20560 1.19968 1.20426 0.83808 0.85103 0.86946 0.69262 0.81092 0.70875 0.90382 0.95627 0.91689 0.92454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.50 9.86 71.24 0.70 -0.80 16 2 C 0.19 4.44 7.31 24.98 0.18 4.63 16 3 O -0.14 -3.45 10.67 -4.86 -0.05 -3.51 16 4 C -0.09 -2.69 7.18 24.04 0.17 -2.51 16 5 C 0.58 15.29 8.30 69.96 0.58 15.87 16 6 O -0.52 -16.15 17.65 19.44 0.34 -15.80 16 7 O -0.49 -8.70 13.44 -56.72 -0.76 -9.47 16 8 C -0.02 -0.63 10.32 22.40 0.23 -0.40 16 9 C -0.80 -23.39 5.92 22.06 0.13 -23.26 16 10 S 2.72 82.77 5.06 -56.49 -0.29 82.48 16 11 O -0.97 -38.46 16.63 -120.56 -2.01 -40.46 16 12 O -0.94 -25.71 17.71 -128.00 -2.27 -27.98 16 13 N -1.04 -30.14 5.43 -173.54 -0.94 -31.09 16 14 C 0.54 21.91 6.99 87.65 0.61 22.52 16 15 O -0.52 -25.34 14.37 14.35 0.21 -25.13 16 16 C 0.03 1.20 2.65 -12.29 -0.03 1.16 16 17 H 0.07 3.02 8.14 -2.39 -0.02 3.00 16 18 C -0.13 -5.34 8.86 71.98 0.64 -4.70 16 19 C -0.54 -28.60 8.37 25.60 0.21 -28.39 16 20 H 0.05 2.92 6.75 -2.91 -0.02 2.90 16 21 C 0.03 1.54 5.30 84.65 0.45 1.99 16 22 N -0.90 -46.76 11.32 21.44 0.24 -46.52 16 23 Si 0.95 42.89 29.54 68.60 2.03 44.92 16 24 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 25 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 26 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 27 H 0.14 1.12 8.14 -2.39 -0.02 1.10 16 28 H 0.13 0.99 8.14 -2.39 -0.02 0.97 16 29 H 0.11 1.21 7.74 -2.39 -0.02 1.19 16 30 H 0.44 2.90 9.11 -74.05 -0.67 2.23 16 31 H 0.17 5.70 8.06 -2.91 -0.02 5.68 16 32 H 0.45 8.83 8.11 -96.74 -0.78 8.05 16 33 H 0.08 3.51 6.07 -2.39 -0.01 3.49 16 34 H 0.02 1.05 8.14 -2.38 -0.02 1.03 16 35 H 0.06 1.92 7.46 -2.39 -0.02 1.90 16 36 H 0.27 13.20 8.31 -92.70 -0.77 12.43 16 Total: -1.00 -77.79 338.40 0.10 -77.69 By element: Atomic # 1 Polarization: 9.04 SS G_CDS: -0.28 Total: 8.76 kcal Atomic # 6 Polarization: -17.77 SS G_CDS: 3.88 Total: -13.89 kcal Atomic # 7 Polarization: -76.91 SS G_CDS: -0.70 Total: -77.61 kcal Atomic # 8 Polarization: -117.81 SS G_CDS: -4.54 Total: -122.35 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 2.03 Total: 44.92 kcal Atomic # 16 Polarization: 82.77 SS G_CDS: -0.29 Total: 82.48 kcal Total: -77.79 0.10 -77.69 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600834399.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -137.797 kcal (2) G-P(sol) polarization free energy of solvation -77.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -215.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -215.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds