Wall clock time and date at job start Tue Mar 31 2020 16:08:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 120.00023 * 2 1 4 4 H 1.48492 * 109.47213 * 179.97438 * 3 2 1 5 5 H 1.48509 * 109.47014 * 299.99614 * 3 2 1 6 6 H 1.48500 * 109.47200 * 59.99001 * 3 2 1 7 7 C 1.37879 * 120.00068 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99764 * 180.02562 * 7 2 1 9 9 C 1.50694 * 119.99907 * 0.02562 * 7 2 1 10 10 O 1.42906 * 110.77910 * 303.23315 * 9 7 2 11 11 C 1.55155 * 110.72532 * 66.47233 * 9 7 2 12 12 C 1.54907 * 101.58383 * 153.86250 * 11 9 7 13 13 N 1.47420 * 104.83524 * 322.99460 * 12 11 9 14 14 S 1.65594 * 125.65174 * 204.16501 * 13 12 11 15 15 O 1.42104 * 106.40319 * 23.49258 * 14 13 12 16 16 O 1.42096 * 106.40689 * 156.41636 * 14 13 12 17 17 C 1.76205 * 107.21904 * 269.95558 * 14 13 12 18 18 O 1.33627 * 125.80511 * 0.02562 * 17 14 13 19 19 C 1.34213 * 110.92592 * 179.97438 * 18 17 14 20 20 C 1.34162 * 109.14573 * 0.02562 * 19 18 17 21 21 C 1.36491 * 125.81234 * 179.71305 * 17 14 13 22 22 C 1.47243 * 127.19986 * 0.03267 * 21 17 14 23 23 O 1.21529 * 119.99936 * 0.02562 * 22 21 17 24 24 O 1.34769 * 119.99728 * 179.97438 * 22 21 17 25 25 C 1.47026 * 108.70428 * 24.12518 * 13 12 11 26 26 H 0.97000 * 120.00118 * 0.02562 * 1 2 3 27 27 H 0.96700 * 113.99898 * 56.76334 * 10 9 7 28 28 H 1.09001 * 111.00015 * 35.78995 * 11 9 7 29 29 H 1.08994 * 111.03653 * 271.95692 * 11 9 7 30 30 H 1.08997 * 110.36783 * 204.15179 * 12 11 9 31 31 H 1.08999 * 110.36448 * 81.82920 * 12 11 9 32 32 H 1.08002 * 125.43151 * 180.02562 * 19 18 17 33 33 H 1.07999 * 127.02914 * 179.97438 * 20 19 18 34 34 H 0.96703 * 116.99403 * 179.97438 * 24 22 21 35 35 H 1.08998 * 109.88351 * 118.35702 * 25 13 12 36 36 H 1.08998 * 109.88379 * 239.52492 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8902 2.3966 1.2124 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 8 0.3630 -2.5718 1.1178 11 6 0.4754 -2.6853 -1.3302 12 6 0.3802 -4.2287 -1.4215 13 7 1.6655 -4.7182 -0.8908 14 16 2.3610 -6.1794 -1.2418 15 8 1.8243 -6.5893 -2.4922 16 8 3.7541 -6.0278 -1.0063 17 6 1.7773 -7.3354 -0.0470 18 8 0.9302 -7.0676 0.9512 19 6 0.6871 -8.1670 1.6816 20 6 1.3803 -9.1962 1.1717 21 6 2.1088 -8.6581 0.0131 22 6 3.0101 -9.3919 -0.8910 23 8 3.5506 -8.8123 -1.8123 24 8 3.2366 -10.7060 -0.6960 25 6 2.2282 -3.6937 0.0011 26 1 -0.4850 0.8400 -0.0004 27 1 -0.2717 -1.8437 1.1637 28 1 1.0379 -2.2782 -2.1705 29 1 -0.5157 -2.2354 -1.2716 30 1 0.2545 -4.5404 -2.4584 31 1 -0.4459 -4.5945 -0.8117 32 1 0.0371 -8.2155 2.5428 33 1 1.3967 -10.2131 1.5352 34 1 3.8355 -11.1449 -1.3155 35 1 2.3244 -4.0934 1.0106 36 1 3.2030 -3.3755 -0.3683 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601063439.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:08:10 Heat of formation + Delta-G solvation = -179.253617 kcal Electronic energy + Delta-G solvation = -27197.342831 eV Core-core repulsion = 22969.224045 eV Total energy + Delta-G solvation = -4228.118786 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 331.070 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.92431 -40.27989 -38.12577 -37.07124 -36.49670 -35.72682 -34.39470 -33.44288 -32.15148 -30.51000 -29.25834 -28.33814 -25.40873 -24.86998 -22.44541 -21.89384 -21.24189 -19.82207 -19.33743 -18.51320 -18.14403 -17.38221 -16.93344 -16.86838 -16.78956 -15.74250 -15.47860 -15.37494 -14.98035 -14.57566 -14.30732 -14.06073 -13.35852 -13.31260 -13.14486 -13.04290 -12.18642 -12.13955 -12.01678 -11.95524 -11.92871 -11.71000 -11.65859 -11.34793 -11.19478 -11.10148 -10.87199 -10.47674 -10.44027 -10.38001 -10.13810 -9.52713 -9.39495 -8.67862 -8.57460 -8.20142 -6.30285 -4.37301 0.29898 0.32942 1.55830 2.29564 2.53525 2.55342 3.19426 3.28590 3.31533 3.34619 3.74758 4.11991 4.25900 4.59823 4.60405 4.79717 4.98106 5.08331 5.25972 5.34871 5.77452 5.79910 5.95827 5.97489 6.04545 6.17570 6.31845 6.37471 6.58286 6.71673 6.89222 6.97716 7.33058 7.36249 7.45785 7.73683 7.99459 8.65285 9.31158 9.44585 10.77556 Molecular weight = 331.07amu Principal moments of inertia in cm(-1) A = 0.025181 B = 0.003670 C = 0.003472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1111.678066 B = 7628.398788 C = 8062.455400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.072 3.928 3 Si 0.904 3.096 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.536 4.536 8 H 0.067 0.933 9 C 0.252 3.748 10 O -0.586 6.586 11 C -0.131 4.131 12 C 0.111 3.889 13 N -0.994 5.994 14 S 2.721 3.279 15 O -0.925 6.925 16 O -0.921 6.921 17 C -0.469 4.469 18 O -0.104 6.104 19 C 0.000 4.000 20 C -0.184 4.184 21 C -0.132 4.132 22 C 0.547 3.453 23 O -0.494 6.494 24 O -0.501 6.501 25 C 0.131 3.869 26 H 0.268 0.732 27 H 0.386 0.614 28 H 0.069 0.931 29 H 0.086 0.914 30 H 0.071 0.929 31 H 0.063 0.937 32 H 0.223 0.777 33 H 0.174 0.826 34 H 0.421 0.579 35 H 0.062 0.938 36 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.660 -16.687 2.181 16.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.130 4.130 3 Si 0.731 3.269 4 H -0.195 1.195 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.574 4.574 8 H 0.086 0.914 9 C 0.211 3.789 10 O -0.397 6.397 11 C -0.171 4.171 12 C -0.013 4.013 13 N -0.836 5.836 14 S 2.800 3.200 15 O -0.915 6.915 16 O -0.911 6.911 17 C -0.597 4.597 18 O 0.005 5.995 19 C -0.070 4.070 20 C -0.203 4.203 21 C -0.136 4.136 22 C 0.390 3.610 23 O -0.383 6.383 24 O -0.313 6.313 25 C 0.007 3.993 26 H 0.079 0.921 27 H 0.238 0.762 28 H 0.088 0.912 29 H 0.105 0.895 30 H 0.089 0.911 31 H 0.081 0.919 32 H 0.239 0.761 33 H 0.191 0.809 34 H 0.280 0.720 35 H 0.080 0.920 36 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -0.132 -16.837 1.770 16.930 hybrid contribution 0.095 0.380 0.213 0.445 sum -0.037 -16.457 1.982 16.576 Atomic orbital electron populations 1.69581 1.05976 1.27638 1.50551 1.24990 0.95029 0.99567 0.93450 0.86349 0.80209 0.82659 0.77679 1.19527 1.20824 1.20827 1.21626 0.93901 0.90207 1.51682 0.91434 1.19424 0.86036 0.90443 0.83014 1.86077 1.51274 1.53298 1.49032 1.23314 1.02794 0.89988 1.01051 1.22302 0.83334 0.98119 0.97555 1.58454 1.34699 1.29756 1.60721 1.01993 0.73683 0.71267 0.73029 1.93618 1.80505 1.81751 1.35626 1.93630 1.27350 1.84599 1.85512 1.37357 1.03059 1.12441 1.06824 1.84092 1.47958 1.35544 1.31909 1.24595 1.00887 0.83852 0.97643 1.23074 0.99849 1.01462 0.95917 1.20330 1.02066 0.92049 0.99190 1.19646 0.78724 0.80709 0.81967 1.91041 1.47724 1.68883 1.30604 1.84515 1.65257 1.22829 1.58664 1.22030 0.97752 0.87816 0.91729 0.92148 0.76161 0.91179 0.89523 0.91097 0.91907 0.76071 0.80889 0.71972 0.91997 0.90115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -22.49 10.71 55.43 0.59 -21.90 16 2 C 0.07 1.80 5.28 -17.82 -0.09 1.71 16 3 Si 0.90 19.86 29.54 -169.99 -5.02 14.84 16 4 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 5 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 6 H -0.28 -6.21 7.11 56.52 0.40 -5.80 16 7 C -0.54 -13.60 8.21 -34.44 -0.28 -13.89 16 8 H 0.07 1.71 7.53 -52.49 -0.40 1.31 16 9 C 0.25 5.90 0.86 -89.94 -0.08 5.82 16 10 O -0.59 -14.09 13.09 -35.23 -0.46 -14.55 16 11 C -0.13 -2.81 5.67 -24.58 -0.14 -2.95 16 12 C 0.11 2.08 7.10 -2.53 -0.02 2.06 16 13 N -0.99 -19.31 3.70 -111.42 -0.41 -19.72 16 14 S 2.72 52.02 4.69 -107.50 -0.50 51.52 16 15 O -0.92 -18.86 16.93 -60.39 -1.02 -19.88 16 16 O -0.92 -19.41 17.23 -60.02 -1.03 -20.44 16 17 C -0.47 -7.75 7.34 30.10 0.22 -7.53 16 18 O -0.10 -1.52 10.52 7.72 0.08 -1.44 16 19 C 0.00 0.00 12.03 29.30 0.35 0.35 16 20 C -0.18 -1.97 11.05 -37.44 -0.41 -2.38 16 21 C -0.13 -1.95 6.32 -103.29 -0.65 -2.61 16 22 C 0.55 7.88 8.33 34.39 0.29 8.17 16 23 O -0.49 -8.74 15.60 -23.55 -0.37 -9.11 16 24 O -0.50 -4.75 13.34 -40.68 -0.54 -5.29 16 25 C 0.13 2.77 6.34 -3.06 -0.02 2.75 16 26 H 0.27 6.44 8.31 -40.82 -0.34 6.11 16 27 H 0.39 9.44 6.98 45.56 0.32 9.76 16 28 H 0.07 1.52 8.04 -51.93 -0.42 1.10 16 29 H 0.09 1.90 7.77 -51.93 -0.40 1.49 16 30 H 0.07 1.21 7.78 -51.93 -0.40 0.80 16 31 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 32 H 0.22 1.15 8.06 -52.49 -0.42 0.73 16 33 H 0.17 1.25 8.06 -52.49 -0.42 0.83 16 34 H 0.42 1.86 9.11 45.56 0.42 2.27 16 35 H 0.06 1.26 8.07 -51.93 -0.42 0.84 16 36 H 0.08 1.70 7.63 -51.93 -0.40 1.30 16 LS Contribution 330.67 15.07 4.98 4.98 Total: -1.00 -32.78 330.67 -6.65 -39.43 By element: Atomic # 1 Polarization: 12.15 SS G_CDS: -2.11 Total: 10.05 kcal Atomic # 6 Polarization: -7.65 SS G_CDS: -0.84 Total: -8.49 kcal Atomic # 7 Polarization: -41.80 SS G_CDS: 0.18 Total: -41.62 kcal Atomic # 8 Polarization: -67.37 SS G_CDS: -3.35 Total: -70.72 kcal Atomic # 14 Polarization: 19.86 SS G_CDS: -5.02 Total: 14.84 kcal Atomic # 16 Polarization: 52.02 SS G_CDS: -0.50 Total: 51.52 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -32.78 -6.65 -39.43 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601063439.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -139.820 kcal (2) G-P(sol) polarization free energy of solvation -32.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds