Wall clock time and date at job start Tue Mar 31 2020 16:08:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 120.00023 * 2 1 4 4 H 1.48492 * 109.47213 * 179.97438 * 3 2 1 5 5 H 1.48509 * 109.47014 * 299.99614 * 3 2 1 6 6 H 1.48500 * 109.47200 * 59.99001 * 3 2 1 7 7 C 1.37879 * 120.00068 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99764 * 180.02562 * 7 2 1 9 9 C 1.50694 * 119.99907 * 0.02562 * 7 2 1 10 10 O 1.42906 * 110.77910 * 303.23315 * 9 7 2 11 11 C 1.55155 * 110.72532 * 66.47233 * 9 7 2 12 12 C 1.54907 * 101.58383 * 153.86250 * 11 9 7 13 13 N 1.47420 * 104.83524 * 322.99460 * 12 11 9 14 14 S 1.65594 * 125.65174 * 204.16501 * 13 12 11 15 15 O 1.42104 * 106.40319 * 23.49258 * 14 13 12 16 16 O 1.42096 * 106.40689 * 156.41636 * 14 13 12 17 17 C 1.76205 * 107.21904 * 269.95558 * 14 13 12 18 18 O 1.33627 * 125.80511 * 0.02562 * 17 14 13 19 19 C 1.34213 * 110.92592 * 179.97438 * 18 17 14 20 20 C 1.34162 * 109.14573 * 0.02562 * 19 18 17 21 21 C 1.36491 * 125.81234 * 179.71305 * 17 14 13 22 22 C 1.47243 * 127.19986 * 0.03267 * 21 17 14 23 23 O 1.21529 * 119.99936 * 0.02562 * 22 21 17 24 24 O 1.34769 * 119.99728 * 179.97438 * 22 21 17 25 25 C 1.47026 * 108.70428 * 24.12518 * 13 12 11 26 26 H 0.97000 * 120.00118 * 0.02562 * 1 2 3 27 27 H 0.96700 * 113.99898 * 56.76334 * 10 9 7 28 28 H 1.09001 * 111.00015 * 35.78995 * 11 9 7 29 29 H 1.08994 * 111.03653 * 271.95692 * 11 9 7 30 30 H 1.08997 * 110.36783 * 204.15179 * 12 11 9 31 31 H 1.08999 * 110.36448 * 81.82920 * 12 11 9 32 32 H 1.08002 * 125.43151 * 180.02562 * 19 18 17 33 33 H 1.07999 * 127.02914 * 179.97438 * 20 19 18 34 34 H 0.96703 * 116.99403 * 179.97438 * 24 22 21 35 35 H 1.08998 * 109.88351 * 118.35702 * 25 13 12 36 36 H 1.08998 * 109.88379 * 239.52492 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8902 2.3966 1.2124 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 8 0.3630 -2.5718 1.1178 11 6 0.4754 -2.6853 -1.3302 12 6 0.3802 -4.2287 -1.4215 13 7 1.6655 -4.7182 -0.8908 14 16 2.3610 -6.1794 -1.2418 15 8 1.8243 -6.5893 -2.4922 16 8 3.7541 -6.0278 -1.0063 17 6 1.7773 -7.3354 -0.0470 18 8 0.9302 -7.0676 0.9512 19 6 0.6871 -8.1670 1.6816 20 6 1.3803 -9.1962 1.1717 21 6 2.1088 -8.6581 0.0131 22 6 3.0101 -9.3919 -0.8910 23 8 3.5506 -8.8123 -1.8123 24 8 3.2366 -10.7060 -0.6960 25 6 2.2282 -3.6937 0.0011 26 1 -0.4850 0.8400 -0.0004 27 1 -0.2717 -1.8437 1.1637 28 1 1.0379 -2.2782 -2.1705 29 1 -0.5157 -2.2354 -1.2716 30 1 0.2545 -4.5404 -2.4584 31 1 -0.4459 -4.5945 -0.8117 32 1 0.0371 -8.2155 2.5428 33 1 1.3967 -10.2131 1.5352 34 1 3.8355 -11.1449 -1.3155 35 1 2.3244 -4.0934 1.0106 36 1 3.2030 -3.3755 -0.3683 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601063439.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:08:10 Heat of formation + Delta-G solvation = -207.258602 kcal Electronic energy + Delta-G solvation = -27198.557218 eV Core-core repulsion = 22969.224045 eV Total energy + Delta-G solvation = -4229.333173 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 331.070 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.92041 -41.32728 -39.82704 -38.61253 -37.50607 -37.22827 -36.15307 -34.45737 -34.07841 -31.48473 -30.95251 -30.04625 -26.76347 -26.44765 -23.42891 -23.36185 -22.42701 -21.59302 -20.45510 -19.82025 -19.36338 -19.01418 -18.50795 -17.99851 -17.93923 -16.99232 -16.88188 -16.73165 -16.46272 -16.17136 -15.88689 -15.24784 -15.01136 -14.70950 -14.25142 -13.99418 -13.92237 -13.82355 -13.58842 -13.53562 -13.38281 -13.14857 -13.02534 -12.92326 -12.82740 -12.61064 -12.32201 -12.24352 -12.19050 -11.95462 -11.41156 -11.20744 -10.58772 -10.46199 -10.12793 -10.06500 -8.20980 -6.34224 -1.13885 -0.80415 0.71342 1.11846 1.44096 1.48939 1.51878 1.55071 1.58827 2.15046 2.36707 2.43126 3.01917 3.13714 3.19481 3.69910 3.72924 3.83907 4.07364 4.23746 4.25404 4.42438 4.55053 4.58850 4.65822 4.92165 5.01166 5.10764 5.18820 5.20817 5.27899 5.45920 5.54430 5.56567 5.82521 6.10771 6.60590 6.69727 7.36782 7.51670 8.85540 Molecular weight = 331.07amu Principal moments of inertia in cm(-1) A = 0.025181 B = 0.003670 C = 0.003472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1111.678066 B = 7628.398788 C = 8062.455400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.037 3.963 3 Si 0.958 3.042 4 H -0.274 1.274 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.562 4.562 8 H 0.058 0.942 9 C 0.240 3.760 10 O -0.589 6.589 11 C -0.126 4.126 12 C 0.115 3.885 13 N -0.998 5.998 14 S 2.740 3.260 15 O -0.947 6.947 16 O -0.953 6.953 17 C -0.511 4.511 18 O -0.119 6.119 19 C 0.018 3.982 20 C -0.176 4.176 21 C -0.140 4.140 22 C 0.547 3.453 23 O -0.537 6.537 24 O -0.478 6.478 25 C 0.135 3.865 26 H 0.272 0.728 27 H 0.382 0.618 28 H 0.059 0.941 29 H 0.079 0.921 30 H 0.087 0.913 31 H 0.078 0.922 32 H 0.275 0.725 33 H 0.213 0.787 34 H 0.443 0.557 35 H 0.066 0.934 36 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.479 -18.530 3.571 18.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.164 4.164 3 Si 0.784 3.216 4 H -0.199 1.199 5 H -0.205 1.205 6 H -0.204 1.204 7 C -0.600 4.600 8 H 0.077 0.923 9 C 0.199 3.801 10 O -0.399 6.399 11 C -0.166 4.166 12 C -0.009 4.009 13 N -0.840 5.840 14 S 2.824 3.176 15 O -0.938 6.938 16 O -0.943 6.943 17 C -0.643 4.643 18 O -0.011 6.011 19 C -0.051 4.051 20 C -0.195 4.195 21 C -0.145 4.145 22 C 0.391 3.609 23 O -0.429 6.429 24 O -0.292 6.292 25 C 0.010 3.990 26 H 0.081 0.919 27 H 0.233 0.767 28 H 0.078 0.922 29 H 0.097 0.903 30 H 0.105 0.895 31 H 0.096 0.904 32 H 0.291 0.709 33 H 0.230 0.770 34 H 0.307 0.693 35 H 0.085 0.915 36 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -0.932 -18.679 3.119 18.961 hybrid contribution 0.304 0.758 -0.097 0.822 sum -0.628 -17.921 3.022 18.185 Atomic orbital electron populations 1.69636 1.06563 1.28339 1.50258 1.25579 0.95836 1.01910 0.93116 0.85503 0.78892 0.79472 0.77688 1.19869 1.20478 1.20420 1.21870 0.93811 0.91703 1.52649 0.92334 1.19555 0.86445 0.90578 0.83564 1.86061 1.51238 1.52990 1.49569 1.23145 1.01791 0.92030 0.99660 1.22317 0.83568 0.96100 0.98958 1.58332 1.34769 1.30169 1.60696 1.00876 0.72843 0.70954 0.72886 1.93577 1.80635 1.81979 1.37567 1.93580 1.29421 1.85171 1.86142 1.36301 1.06651 1.12632 1.08754 1.84070 1.47640 1.37536 1.31851 1.25764 0.99812 0.82215 0.97342 1.23568 0.98548 1.03348 0.93990 1.20786 1.01738 0.91751 1.00201 1.19784 0.78084 0.81848 0.81194 1.91028 1.49431 1.70053 1.32408 1.84466 1.65410 1.20337 1.59007 1.21846 0.97052 0.87752 0.92346 0.91858 0.76653 0.92219 0.90271 0.89463 0.90355 0.70935 0.77011 0.69292 0.91536 0.90776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -45.56 10.71 21.45 0.23 -45.33 16 2 C 0.04 1.84 5.28 84.66 0.45 2.29 16 3 Si 0.96 40.81 29.54 68.60 2.03 42.83 16 4 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 5 H -0.28 -11.68 7.11 99.48 0.71 -10.97 16 6 H -0.28 -11.63 7.11 99.48 0.71 -10.92 16 7 C -0.56 -29.04 8.21 25.60 0.21 -28.83 16 8 H 0.06 3.04 7.53 -2.91 -0.02 3.02 16 9 C 0.24 11.38 0.86 -10.35 -0.01 11.37 16 10 O -0.59 -28.47 13.09 -148.98 -1.95 -30.42 16 11 C -0.13 -5.48 5.67 31.98 0.18 -5.30 16 12 C 0.11 4.27 7.10 86.86 0.62 4.89 16 13 N -1.00 -39.29 3.70 -506.43 -1.87 -41.16 16 14 S 2.74 106.79 4.69 -56.49 -0.27 106.52 16 15 O -0.95 -39.43 16.93 -124.92 -2.11 -41.55 16 16 O -0.95 -41.59 17.23 -125.28 -2.16 -43.75 16 17 C -0.51 -16.54 7.34 67.41 0.49 -16.04 16 18 O -0.12 -3.24 10.52 4.72 0.05 -3.19 16 19 C 0.02 0.29 12.03 66.89 0.80 1.09 16 20 C -0.18 -3.04 11.05 23.66 0.26 -2.78 16 21 C -0.14 -3.90 6.32 -19.00 -0.12 -4.02 16 22 C 0.55 15.10 8.33 70.19 0.58 15.69 16 23 O -0.54 -19.16 15.60 23.82 0.37 -18.79 16 24 O -0.48 -7.77 13.34 -56.79 -0.76 -8.52 16 25 C 0.13 5.84 6.34 86.73 0.55 6.39 16 26 H 0.27 12.96 8.31 -92.71 -0.77 12.19 16 27 H 0.38 18.86 6.98 -74.06 -0.52 18.34 16 28 H 0.06 2.66 8.04 -2.39 -0.02 2.64 16 29 H 0.08 3.51 7.77 -2.39 -0.02 3.49 16 30 H 0.09 2.95 7.78 -2.39 -0.02 2.93 16 31 H 0.08 2.67 8.14 -2.39 -0.02 2.65 16 32 H 0.28 1.19 8.06 -2.91 -0.02 1.16 16 33 H 0.21 1.85 8.06 -2.91 -0.02 1.83 16 34 H 0.44 2.74 9.11 -74.06 -0.67 2.07 16 35 H 0.07 2.76 8.07 -2.39 -0.02 2.74 16 36 H 0.07 3.25 7.63 -2.39 -0.02 3.23 16 Total: -1.00 -72.79 330.67 -2.44 -75.23 By element: Atomic # 1 Polarization: 23.41 SS G_CDS: -0.02 Total: 23.38 kcal Atomic # 6 Polarization: -19.27 SS G_CDS: 4.02 Total: -15.25 kcal Atomic # 7 Polarization: -84.85 SS G_CDS: -1.64 Total: -86.49 kcal Atomic # 8 Polarization: -139.67 SS G_CDS: -6.56 Total: -146.22 kcal Atomic # 14 Polarization: 40.81 SS G_CDS: 2.03 Total: 42.83 kcal Atomic # 16 Polarization: 106.79 SS G_CDS: -0.27 Total: 106.52 kcal Total: -72.79 -2.44 -75.23 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601063439.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -132.024 kcal (2) G-P(sol) polarization free energy of solvation -72.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -204.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -207.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds