Wall clock time and date at job start Tue Mar 31 2020 16:08:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99667 * 2 1 4 4 H 1.48508 * 109.46895 * 239.99549 * 3 2 1 5 5 H 1.48495 * 109.47555 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.46916 * 120.00327 * 3 2 1 7 7 C 1.37876 * 120.00205 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99860 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99706 * 359.97438 * 7 2 1 10 10 O 1.42905 * 110.88469 * 62.42811 * 9 7 2 11 11 C 1.55160 * 111.00718 * 298.54674 * 9 7 2 12 12 C 1.54321 * 102.94092 * 206.42300 * 11 9 7 13 13 N 1.47017 * 107.27414 * 22.19422 * 12 11 9 14 14 S 1.65598 * 125.65137 * 181.01858 * 13 12 11 15 15 O 1.42102 * 106.40236 * 336.48661 * 14 13 12 16 16 O 1.42092 * 106.40542 * 203.56474 * 14 13 12 17 17 C 1.76197 * 107.21706 * 90.02280 * 14 13 12 18 18 O 1.33631 * 125.80924 * 330.15697 * 17 14 13 19 19 C 1.34221 * 110.92341 * 180.31983 * 18 17 14 20 20 C 1.34166 * 109.14381 * 359.71707 * 19 18 17 21 21 C 1.36501 * 125.80822 * 150.00004 * 17 14 13 22 22 C 1.47229 * 127.20091 * 359.96529 * 21 17 14 23 23 O 1.21543 * 119.99806 * 359.70933 * 22 21 17 24 24 O 1.34773 * 120.00212 * 179.97438 * 22 21 17 25 25 C 1.47434 * 108.70230 * 1.28725 * 13 12 11 26 26 H 0.97005 * 119.99942 * 0.02562 * 1 2 3 27 27 H 0.96695 * 114.00083 * 297.57185 * 10 9 7 28 28 H 1.08997 * 110.71952 * 88.06074 * 11 9 7 29 29 H 1.09002 * 110.86900 * 324.86037 * 11 9 7 30 30 H 1.08997 * 109.88560 * 262.77265 * 12 11 9 31 31 H 1.09002 * 109.87736 * 141.60949 * 12 11 9 32 32 H 1.07996 * 125.43058 * 179.75863 * 19 18 17 33 33 H 1.08001 * 127.02320 * 179.97438 * 20 19 18 34 34 H 0.96698 * 116.99574 * 179.72028 * 24 22 21 35 35 H 1.08997 * 110.36538 * 94.48183 * 25 13 12 36 36 H 1.08997 * 110.36115 * 216.80575 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0017 10 8 0.4607 -2.6321 -1.1814 11 6 0.3740 -2.6339 1.2745 12 6 0.2588 -4.1622 1.4547 13 7 1.3944 -4.7719 0.7475 14 16 1.6985 -6.3954 0.6291 15 8 1.0444 -7.0077 1.7320 16 8 3.0916 -6.5258 0.3816 17 6 0.8796 -6.9751 -0.8193 18 8 -0.2416 -6.4674 -1.3397 19 6 -0.6072 -7.1419 -2.4410 20 6 0.2829 -8.1182 -2.6748 21 6 1.2841 -8.0173 -1.6025 22 6 2.4712 -8.8668 -1.4103 23 8 3.2166 -8.6661 -0.4715 24 8 2.7342 -9.8636 -2.2784 25 6 2.2213 -3.6983 0.1668 26 1 -0.4850 0.8401 -0.0004 27 1 -0.2253 -1.9569 -1.2741 28 1 -0.6083 -2.1893 1.1148 29 1 0.8658 -2.1800 2.1349 30 1 -0.6785 -4.5165 1.0257 31 1 0.3030 -4.4149 2.5141 32 1 -1.4786 -6.9318 -3.0435 33 1 0.2669 -8.8325 -3.4846 34 1 3.5272 -10.3917 -2.1131 35 1 3.0364 -3.4396 0.8425 36 1 2.6138 -4.0043 -0.8029 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601063440.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:08:13 Heat of formation + Delta-G solvation = -175.938987 kcal Electronic energy + Delta-G solvation = -27431.753447 eV Core-core repulsion = 23203.778394 eV Total energy + Delta-G solvation = -4227.975053 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 331.070 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.79365 -40.10071 -38.10846 -37.03595 -36.29492 -35.65735 -34.32586 -33.31221 -32.23283 -30.39002 -29.27972 -28.31954 -25.26235 -24.87960 -22.32636 -21.81028 -21.09541 -19.86643 -19.21376 -18.42845 -18.04402 -17.31086 -17.01057 -16.69484 -16.52381 -15.59220 -15.35314 -15.34659 -14.96468 -14.52365 -14.28751 -13.99957 -13.41336 -13.17731 -13.02264 -12.95660 -12.44792 -12.03388 -11.92492 -11.86623 -11.83566 -11.72478 -11.61327 -11.35622 -11.04243 -10.85761 -10.79115 -10.55869 -10.45536 -10.24475 -10.03129 -9.44657 -9.40286 -8.72305 -8.48102 -8.23207 -6.29331 -4.37346 0.32279 0.51238 1.68613 2.42478 2.64076 2.74083 3.21587 3.26504 3.29630 3.36635 3.79860 4.24554 4.25337 4.62831 4.72939 4.93472 4.96779 5.21577 5.35695 5.37102 5.78600 5.88783 5.90213 5.98758 6.16471 6.20993 6.32188 6.48528 6.55371 6.72142 6.91018 6.98155 7.32115 7.36432 7.63410 7.72606 8.01473 8.65006 9.29071 9.37608 10.77959 Molecular weight = 331.07amu Principal moments of inertia in cm(-1) A = 0.020837 B = 0.003935 C = 0.003814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1343.409662 B = 7113.281447 C = 7340.499233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.074 3.926 3 Si 0.902 3.098 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.537 4.537 8 H 0.065 0.935 9 C 0.251 3.749 10 O -0.583 6.583 11 C -0.131 4.131 12 C 0.117 3.883 13 N -0.992 5.992 14 S 2.715 3.285 15 O -0.939 6.939 16 O -0.902 6.902 17 C -0.470 4.470 18 O -0.102 6.102 19 C 0.003 3.997 20 C -0.187 4.187 21 C -0.130 4.130 22 C 0.535 3.465 23 O -0.471 6.471 24 O -0.506 6.506 25 C 0.133 3.867 26 H 0.268 0.732 27 H 0.381 0.619 28 H 0.086 0.914 29 H 0.070 0.930 30 H 0.058 0.942 31 H 0.061 0.939 32 H 0.221 0.779 33 H 0.172 0.828 34 H 0.418 0.582 35 H 0.082 0.918 36 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.144 -13.770 -4.342 14.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.129 4.129 3 Si 0.730 3.270 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.200 1.200 7 C -0.576 4.576 8 H 0.083 0.917 9 C 0.209 3.791 10 O -0.391 6.391 11 C -0.171 4.171 12 C -0.007 4.007 13 N -0.834 5.834 14 S 2.794 3.206 15 O -0.929 6.929 16 O -0.892 6.892 17 C -0.599 4.599 18 O 0.007 5.993 19 C -0.067 4.067 20 C -0.206 4.206 21 C -0.134 4.134 22 C 0.376 3.624 23 O -0.358 6.358 24 O -0.318 6.318 25 C 0.009 3.991 26 H 0.078 0.922 27 H 0.231 0.769 28 H 0.105 0.895 29 H 0.088 0.912 30 H 0.076 0.924 31 H 0.080 0.920 32 H 0.238 0.762 33 H 0.190 0.810 34 H 0.278 0.722 35 H 0.100 0.900 36 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -1.753 -14.278 -3.643 14.839 hybrid contribution 0.113 0.806 -0.812 1.150 sum -1.640 -13.471 -4.455 14.283 Atomic orbital electron populations 1.69707 1.05954 1.27720 1.50001 1.24972 0.94999 0.99457 0.93445 0.86489 0.79545 0.82117 0.78878 1.20069 1.21198 1.20015 1.21436 0.93767 0.90208 1.52170 0.91657 1.19652 0.86927 0.90442 0.82045 1.86100 1.51520 1.56974 1.44555 1.23174 1.03063 0.89826 1.01049 1.21967 0.86976 0.96905 0.94891 1.58467 1.37600 1.21456 1.65861 1.02215 0.73902 0.71777 0.72705 1.93606 1.77372 1.75308 1.46624 1.93710 1.25809 1.84866 1.84808 1.37256 0.97045 1.05438 1.20112 1.84061 1.32782 1.47938 1.34521 1.24555 1.00847 0.92691 0.88622 1.23061 0.94457 1.02415 1.00693 1.20361 0.96870 0.97655 0.98537 1.19715 0.83686 0.78832 0.80141 1.91161 1.47125 1.67420 1.30054 1.84517 1.49866 1.43829 1.53582 1.22327 0.93419 0.86217 0.97122 0.92193 0.76934 0.89502 0.91172 0.92374 0.92031 0.76240 0.81048 0.72247 0.89981 0.91398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -22.25 10.76 55.43 0.60 -21.65 16 2 C 0.07 1.84 5.29 -17.82 -0.09 1.75 16 3 Si 0.90 19.69 29.54 -169.99 -5.02 14.67 16 4 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 5 H -0.29 -6.22 7.11 56.52 0.40 -5.82 16 6 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 7 C -0.54 -13.47 8.27 -34.44 -0.28 -13.75 16 8 H 0.07 1.62 7.79 -52.49 -0.41 1.21 16 9 C 0.25 5.77 0.87 -89.50 -0.08 5.69 16 10 O -0.58 -13.83 13.17 -35.23 -0.46 -14.29 16 11 C -0.13 -2.76 5.37 -24.90 -0.13 -2.89 16 12 C 0.12 2.18 6.99 -3.07 -0.02 2.16 16 13 N -0.99 -19.15 3.70 -111.29 -0.41 -19.56 16 14 S 2.71 51.42 5.58 -107.50 -0.60 50.82 16 15 O -0.94 -18.86 17.60 -57.17 -1.01 -19.87 16 16 O -0.90 -18.69 14.52 -66.97 -0.97 -19.67 16 17 C -0.47 -8.04 7.37 30.11 0.22 -7.82 16 18 O -0.10 -1.58 10.52 7.69 0.08 -1.50 16 19 C 0.00 0.03 12.03 29.30 0.35 0.38 16 20 C -0.19 -2.18 11.05 -37.44 -0.41 -2.60 16 21 C -0.13 -2.01 6.31 -103.30 -0.65 -2.66 16 22 C 0.53 8.01 8.32 34.38 0.29 8.30 16 23 O -0.47 -8.53 14.11 -27.29 -0.39 -8.91 16 24 O -0.51 -5.19 13.34 -40.69 -0.54 -5.73 16 25 C 0.13 2.78 6.17 -2.40 -0.01 2.77 16 26 H 0.27 6.45 8.31 -40.82 -0.34 6.11 16 27 H 0.38 9.08 7.56 45.56 0.34 9.42 16 28 H 0.09 1.89 7.55 -51.93 -0.39 1.50 16 29 H 0.07 1.49 8.04 -51.93 -0.42 1.07 16 30 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.22 1.38 8.06 -52.49 -0.42 0.96 16 33 H 0.17 1.42 8.06 -52.49 -0.42 0.99 16 34 H 0.42 2.18 9.11 45.56 0.42 2.60 16 35 H 0.08 1.64 8.03 -51.93 -0.42 1.22 16 36 H 0.07 1.40 8.14 -51.93 -0.42 0.97 16 LS Contribution 329.11 15.07 4.96 4.96 Total: -1.00 -32.50 329.11 -6.72 -39.22 By element: Atomic # 1 Polarization: 12.33 SS G_CDS: -2.12 Total: 10.21 kcal Atomic # 6 Polarization: -7.84 SS G_CDS: -0.83 Total: -8.68 kcal Atomic # 7 Polarization: -41.40 SS G_CDS: 0.18 Total: -41.21 kcal Atomic # 8 Polarization: -66.69 SS G_CDS: -3.29 Total: -69.98 kcal Atomic # 14 Polarization: 19.69 SS G_CDS: -5.02 Total: 14.67 kcal Atomic # 16 Polarization: 51.42 SS G_CDS: -0.60 Total: 50.82 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -32.50 -6.72 -39.22 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601063440.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -136.719 kcal (2) G-P(sol) polarization free energy of solvation -32.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds