Wall clock time and date at job start Tue Mar 31 2020 16:06:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86797 * 120.00073 * 2 1 4 4 H 1.48506 * 109.47317 * 239.99840 * 3 2 1 5 5 H 1.48496 * 109.47264 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47365 * 120.00079 * 3 2 1 7 7 C 1.37886 * 120.00016 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99622 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99929 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.46792 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.46979 * 180.02562 * 10 9 7 12 12 C 1.50699 * 109.47291 * 179.97438 * 11 10 9 13 13 O 1.21279 * 119.99981 * 359.97438 * 12 11 10 14 14 N 1.34774 * 119.99940 * 179.97438 * 12 11 10 15 15 S 1.65599 * 119.99949 * 180.02562 * 14 12 11 16 16 O 1.42099 * 106.40127 * 311.46075 * 15 14 12 17 17 O 1.42099 * 106.40407 * 178.54072 * 15 14 12 18 18 C 1.76198 * 107.21906 * 64.99886 * 15 14 12 19 19 C 1.34164 * 125.42692 * 90.00190 * 18 15 14 20 20 C 1.47058 * 105.94897 * 179.97438 * 19 18 15 21 21 C 1.47231 * 127.20190 * 179.97438 * 20 19 18 22 22 O 1.21539 * 119.99687 * 359.97438 * 21 20 19 23 23 O 1.34764 * 120.00192 * 179.97438 * 21 20 19 24 24 C 1.36496 * 105.59677 * 359.97438 * 20 19 18 25 25 O 1.33628 * 108.38430 * 0.02562 * 24 20 19 26 26 H 0.96995 * 120.00442 * 0.02562 * 1 2 3 27 27 H 1.08999 * 109.46889 * 59.99791 * 9 7 2 28 28 H 1.09004 * 109.46558 * 299.99804 * 9 7 2 29 29 H 1.08994 * 109.47719 * 59.99647 * 10 9 7 30 30 H 1.09000 * 109.46823 * 299.99336 * 10 9 7 31 31 H 1.09003 * 109.47602 * 59.99087 * 11 10 9 32 32 H 1.09005 * 109.46675 * 299.99957 * 11 10 9 33 33 H 0.97002 * 119.99935 * 359.97438 * 14 12 11 34 34 H 1.07999 * 127.02221 * 359.71594 * 19 18 15 35 35 H 0.96703 * 117.00293 * 179.97438 * 23 21 20 36 36 H 1.08005 * 125.80830 * 179.97438 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0018 11 6 1.4803 -4.9871 0.0012 12 6 2.4596 -6.1326 0.0018 13 8 3.6520 -5.9109 0.0022 14 7 2.0103 -7.4032 0.0019 15 16 3.0864 -8.6619 0.0033 16 8 4.0340 -8.3807 -1.0176 17 8 2.3114 -9.8524 0.0378 18 6 3.9648 -8.5956 1.5293 19 6 3.5990 -9.2100 2.6645 20 6 4.6284 -8.8696 3.6580 21 6 4.6842 -9.2992 5.0651 22 8 3.8121 -10.0153 5.5168 23 8 5.7021 -8.8986 5.8522 24 6 5.5214 -8.0719 3.0026 25 8 5.1068 -7.9231 1.7410 26 1 -0.4850 0.8400 -0.0004 27 1 0.6247 -2.5571 -0.8897 28 1 0.6240 -2.5567 0.8904 29 1 2.8713 -3.6040 0.8922 30 1 2.8725 -3.6047 -0.8878 31 1 0.8545 -5.0450 -0.8894 32 1 0.8527 -5.0447 0.8905 33 1 1.0566 -7.5804 0.0020 34 1 2.7247 -9.8251 2.8184 35 1 5.6955 -9.2060 6.7690 36 1 6.4112 -7.6347 3.4311 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601064888.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:06:37 Heat of formation + Delta-G solvation = -192.346506 kcal Electronic energy + Delta-G solvation = -25438.860649 eV Core-core repulsion = 21210.174113 eV Total energy + Delta-G solvation = -4228.686536 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 331.070 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.20237 -40.33155 -40.15738 -37.74017 -36.54439 -36.40890 -34.69016 -34.39692 -33.65333 -32.12794 -30.99389 -28.16992 -25.30010 -24.36059 -23.02758 -21.88244 -21.61228 -20.33066 -20.03888 -19.29413 -18.25830 -18.21136 -17.43153 -16.88864 -16.76175 -16.27327 -16.22560 -15.84827 -15.72268 -15.44990 -14.55920 -14.30842 -14.26181 -13.79250 -13.67814 -13.28449 -13.18161 -12.66754 -12.51076 -12.36936 -12.11050 -12.05281 -11.92117 -11.58177 -11.24742 -11.12210 -10.85206 -10.76936 -10.67913 -10.64858 -10.30149 -9.88155 -9.78904 -9.41647 -9.13774 -8.37709 -6.03467 -4.05399 -0.43609 0.50229 0.77673 1.94969 2.14409 2.34737 2.47440 2.69086 3.10309 3.32902 3.36980 3.40236 3.92049 3.96255 4.10174 4.38038 4.46335 4.64942 4.79391 4.94145 5.08574 5.32824 5.37873 5.43623 5.47063 5.93442 5.98081 6.08697 6.39946 6.55617 6.75825 7.00650 7.37808 7.46561 7.61905 7.73289 7.96036 8.38864 9.01260 9.59035 11.07906 Molecular weight = 331.07amu Principal moments of inertia in cm(-1) A = 0.012887 B = 0.002828 C = 0.002492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2172.243715 B = 9900.032844 C =11233.720418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.521 4.521 8 H 0.056 0.944 9 C 0.021 3.979 10 C -0.101 4.101 11 C -0.138 4.138 12 C 0.529 3.471 13 O -0.476 6.476 14 N -1.052 6.052 15 S 2.709 3.291 16 O -0.906 6.906 17 O -0.925 6.925 18 C -0.569 4.569 19 C -0.029 4.029 20 C -0.256 4.256 21 C 0.560 3.440 22 O -0.509 6.509 23 O -0.512 6.512 24 C 0.111 3.889 25 O -0.097 6.097 26 H 0.261 0.739 27 H 0.018 0.982 28 H 0.017 0.983 29 H 0.057 0.943 30 H 0.060 0.940 31 H 0.103 0.897 32 H 0.101 0.899 33 H 0.438 0.562 34 H 0.183 0.817 35 H 0.420 0.580 36 H 0.234 0.766 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.760 -21.022 7.542 23.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.560 4.560 8 H 0.074 0.926 9 C -0.016 4.016 10 C -0.139 4.139 11 C -0.180 4.180 12 C 0.317 3.683 13 O -0.345 6.345 14 N -0.821 5.821 15 S 2.793 3.207 16 O -0.896 6.896 17 O -0.915 6.915 18 C -0.698 4.698 19 C -0.050 4.050 20 C -0.260 4.260 21 C 0.404 3.596 22 O -0.398 6.398 23 O -0.325 6.325 24 C 0.035 3.965 25 O 0.013 5.987 26 H 0.071 0.929 27 H 0.036 0.964 28 H 0.035 0.965 29 H 0.076 0.924 30 H 0.079 0.921 31 H 0.121 0.879 32 H 0.119 0.881 33 H 0.276 0.724 34 H 0.201 0.799 35 H 0.280 0.720 36 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges 7.552 -21.200 6.390 23.395 hybrid contribution -0.068 0.690 1.666 1.804 sum 7.484 -20.510 8.056 23.272 Atomic orbital electron populations 1.69937 1.06050 1.26785 1.50864 1.25013 0.94857 0.99285 0.95265 0.86644 0.79572 0.83007 0.78704 1.20178 1.21326 1.20237 1.21211 0.93169 0.90941 1.50635 0.92562 1.19124 0.93886 0.91280 0.97325 1.21565 0.98929 0.91274 1.02165 1.22051 0.97916 0.92998 1.05052 1.21542 0.91168 0.83265 0.72319 1.90898 1.16425 1.83439 1.43784 1.55173 1.24290 1.21116 1.81562 1.02270 0.73378 0.72752 0.72305 1.93677 1.61115 1.83534 1.51280 1.93711 1.69405 1.42553 1.85853 1.35484 1.00515 1.11263 1.22490 1.22931 0.98186 0.95106 0.88770 1.20597 1.01291 1.10824 0.93249 1.19444 0.78555 0.76546 0.85019 1.90939 1.38557 1.35330 1.74972 1.84521 1.47880 1.71824 1.28295 1.25452 0.97562 0.91973 0.81491 1.84115 1.31887 1.54681 1.28038 0.92928 0.96380 0.96489 0.92395 0.92127 0.87885 0.88052 0.72442 0.79929 0.72023 0.74940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.23 13.29 55.43 0.74 -25.50 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.89 21.39 29.54 -169.99 -5.02 16.37 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 6 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.52 -14.42 9.11 -34.44 -0.31 -14.74 16 8 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 9 C 0.02 0.51 4.97 -27.88 -0.14 0.37 16 10 C -0.10 -1.95 4.44 -26.73 -0.12 -2.07 16 11 C -0.14 -1.89 5.70 -27.88 -0.16 -2.05 16 12 C 0.53 7.01 7.66 -10.99 -0.08 6.92 16 13 O -0.48 -8.05 14.81 -11.51 -0.17 -8.22 16 14 N -1.05 -9.89 5.70 31.22 0.18 -9.71 16 15 S 2.71 30.06 5.53 -107.50 -0.59 29.47 16 16 O -0.91 -13.63 16.97 -64.66 -1.10 -14.73 16 17 O -0.92 -10.40 17.81 -57.17 -1.02 -11.42 16 18 C -0.57 -6.36 6.92 29.30 0.20 -6.16 16 19 C -0.03 -0.29 10.70 -37.44 -0.40 -0.69 16 20 C -0.26 -2.51 6.31 -103.30 -0.65 -3.16 16 21 C 0.56 5.31 8.33 34.38 0.29 5.59 16 22 O -0.51 -6.29 17.77 -19.30 -0.34 -6.64 16 23 O -0.51 -3.08 13.28 -40.67 -0.54 -3.62 16 24 C 0.11 0.95 11.94 30.10 0.36 1.31 16 25 O -0.10 -1.13 10.48 7.72 0.08 -1.05 16 26 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 27 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.06 1.14 8.10 -51.93 -0.42 0.72 16 30 H 0.06 1.22 8.10 -51.93 -0.42 0.80 16 31 H 0.10 1.22 8.14 -51.93 -0.42 0.79 16 32 H 0.10 1.17 8.14 -51.93 -0.42 0.74 16 33 H 0.44 2.25 8.83 -34.47 -0.30 1.95 16 34 H 0.18 1.48 8.06 -52.49 -0.42 1.06 16 35 H 0.42 0.68 9.11 45.56 0.42 1.10 16 36 H 0.23 0.99 8.06 -52.48 -0.42 0.57 16 LS Contribution 346.92 15.07 5.23 5.23 Total: -1.00 -39.36 346.92 -6.49 -45.84 By element: Atomic # 1 Polarization: -0.07 SS G_CDS: -2.81 Total: -2.88 kcal Atomic # 6 Polarization: -12.04 SS G_CDS: -1.12 Total: -13.15 kcal Atomic # 7 Polarization: -36.12 SS G_CDS: 0.91 Total: -35.21 kcal Atomic # 8 Polarization: -42.58 SS G_CDS: -3.09 Total: -45.67 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Atomic # 16 Polarization: 30.06 SS G_CDS: -0.59 Total: 29.47 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -39.36 -6.49 -45.84 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601064888.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -146.503 kcal (2) G-P(sol) polarization free energy of solvation -39.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -185.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -192.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds