Wall clock time and date at job start Tue Mar 31 2020 16:06:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86797 * 120.00073 * 2 1 4 4 H 1.48506 * 109.47317 * 239.99840 * 3 2 1 5 5 H 1.48496 * 109.47264 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47365 * 120.00079 * 3 2 1 7 7 C 1.37886 * 120.00016 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99622 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99929 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.46792 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.46979 * 180.02562 * 10 9 7 12 12 C 1.50699 * 109.47291 * 179.97438 * 11 10 9 13 13 O 1.21279 * 119.99981 * 359.97438 * 12 11 10 14 14 N 1.34774 * 119.99940 * 179.97438 * 12 11 10 15 15 S 1.65599 * 119.99949 * 180.02562 * 14 12 11 16 16 O 1.42099 * 106.40127 * 311.46075 * 15 14 12 17 17 O 1.42099 * 106.40407 * 178.54072 * 15 14 12 18 18 C 1.76198 * 107.21906 * 64.99886 * 15 14 12 19 19 C 1.34164 * 125.42692 * 90.00190 * 18 15 14 20 20 C 1.47058 * 105.94897 * 179.97438 * 19 18 15 21 21 C 1.47231 * 127.20190 * 179.97438 * 20 19 18 22 22 O 1.21539 * 119.99687 * 359.97438 * 21 20 19 23 23 O 1.34764 * 120.00192 * 179.97438 * 21 20 19 24 24 C 1.36496 * 105.59677 * 359.97438 * 20 19 18 25 25 O 1.33628 * 108.38430 * 0.02562 * 24 20 19 26 26 H 0.96995 * 120.00442 * 0.02562 * 1 2 3 27 27 H 1.08999 * 109.46889 * 59.99791 * 9 7 2 28 28 H 1.09004 * 109.46558 * 299.99804 * 9 7 2 29 29 H 1.08994 * 109.47719 * 59.99647 * 10 9 7 30 30 H 1.09000 * 109.46823 * 299.99336 * 10 9 7 31 31 H 1.09003 * 109.47602 * 59.99087 * 11 10 9 32 32 H 1.09005 * 109.46675 * 299.99957 * 11 10 9 33 33 H 0.97002 * 119.99935 * 359.97438 * 14 12 11 34 34 H 1.07999 * 127.02221 * 359.71594 * 19 18 15 35 35 H 0.96703 * 117.00293 * 179.97438 * 23 21 20 36 36 H 1.08005 * 125.80830 * 179.97438 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0018 11 6 1.4803 -4.9871 0.0012 12 6 2.4596 -6.1326 0.0018 13 8 3.6520 -5.9109 0.0022 14 7 2.0103 -7.4032 0.0019 15 16 3.0864 -8.6619 0.0033 16 8 4.0340 -8.3807 -1.0176 17 8 2.3114 -9.8524 0.0378 18 6 3.9648 -8.5956 1.5293 19 6 3.5990 -9.2100 2.6645 20 6 4.6284 -8.8696 3.6580 21 6 4.6842 -9.2992 5.0651 22 8 3.8121 -10.0153 5.5168 23 8 5.7021 -8.8986 5.8522 24 6 5.5214 -8.0719 3.0026 25 8 5.1068 -7.9231 1.7410 26 1 -0.4850 0.8400 -0.0004 27 1 0.6247 -2.5571 -0.8897 28 1 0.6240 -2.5567 0.8904 29 1 2.8713 -3.6040 0.8922 30 1 2.8725 -3.6047 -0.8878 31 1 0.8545 -5.0450 -0.8894 32 1 0.8527 -5.0447 0.8905 33 1 1.0566 -7.5804 0.0020 34 1 2.7247 -9.8251 2.8184 35 1 5.6955 -9.2060 6.7690 36 1 6.4112 -7.6347 3.4311 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601064888.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:06:37 Heat of formation + Delta-G solvation = -224.297645 kcal Electronic energy + Delta-G solvation = -25440.246154 eV Core-core repulsion = 21210.174113 eV Total energy + Delta-G solvation = -4230.072042 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 331.070 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.96628 -41.25601 -41.01049 -38.69469 -37.39856 -37.18047 -36.15788 -35.68136 -34.42150 -33.99691 -31.74061 -29.85432 -26.11478 -26.00284 -23.79576 -23.24722 -22.37142 -21.62651 -21.03136 -20.13806 -19.19815 -18.92279 -18.60812 -18.15696 -17.66052 -17.52907 -17.08133 -16.74724 -16.55053 -16.52454 -16.39062 -15.57739 -15.17346 -14.95026 -14.49370 -14.28791 -14.20794 -13.96192 -13.68809 -13.61442 -13.49973 -13.15516 -12.97047 -12.73555 -12.60934 -12.51370 -12.41895 -12.11454 -12.01011 -11.63039 -11.49123 -11.45307 -11.28859 -11.04530 -10.62367 -10.50165 -8.17329 -6.26276 -1.31492 -0.21788 0.02034 0.96195 1.37341 1.42565 1.44314 1.51326 1.52577 1.76537 2.03194 2.25693 2.43824 3.07720 3.16500 3.21568 3.39423 3.44730 3.86700 3.91288 4.20194 4.30074 4.34240 4.46711 4.69898 4.80365 5.00253 5.13300 5.25284 5.33026 5.44426 5.58628 5.61377 5.81139 5.92040 6.31393 6.43805 6.83843 6.90112 7.42308 8.93722 Molecular weight = 331.07amu Principal moments of inertia in cm(-1) A = 0.012887 B = 0.002828 C = 0.002492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2172.243715 B = 9900.032844 C =11233.720418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.004 3.996 3 Si 0.957 3.043 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.269 1.269 7 C -0.547 4.547 8 H 0.053 0.947 9 C 0.024 3.976 10 C -0.091 4.091 11 C -0.133 4.133 12 C 0.539 3.461 13 O -0.515 6.515 14 N -1.033 6.033 15 S 2.733 3.267 16 O -0.948 6.948 17 O -0.926 6.926 18 C -0.589 4.589 19 C -0.025 4.025 20 C -0.278 4.278 21 C 0.569 3.431 22 O -0.545 6.545 23 O -0.500 6.500 24 C 0.128 3.872 25 O -0.121 6.121 26 H 0.264 0.736 27 H 0.003 0.997 28 H 0.005 0.995 29 H 0.049 0.951 30 H 0.046 0.954 31 H 0.127 0.873 32 H 0.129 0.871 33 H 0.458 0.542 34 H 0.198 0.802 35 H 0.440 0.560 36 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.198 -21.306 8.476 24.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.194 4.194 3 Si 0.782 3.218 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.194 1.194 7 C -0.585 4.585 8 H 0.071 0.929 9 C -0.013 4.013 10 C -0.130 4.130 11 C -0.174 4.174 12 C 0.328 3.672 13 O -0.387 6.387 14 N -0.804 5.804 15 S 2.819 3.181 16 O -0.938 6.938 17 O -0.917 6.917 18 C -0.718 4.718 19 C -0.046 4.046 20 C -0.281 4.281 21 C 0.414 3.586 22 O -0.437 6.437 23 O -0.314 6.314 24 C 0.053 3.947 25 O -0.012 6.012 26 H 0.072 0.928 27 H 0.022 0.978 28 H 0.023 0.977 29 H 0.068 0.932 30 H 0.065 0.935 31 H 0.145 0.855 32 H 0.147 0.853 33 H 0.300 0.700 34 H 0.215 0.785 35 H 0.303 0.697 36 H 0.289 0.711 Dipole moment (debyes) X Y Z Total from point charges 7.963 -21.511 7.326 24.079 hybrid contribution -0.167 0.755 1.467 1.658 sum 7.796 -20.756 8.793 23.852 Atomic orbital electron populations 1.70041 1.07426 1.27754 1.51708 1.25853 0.95753 1.02898 0.94885 0.85625 0.78416 0.78742 0.79022 1.19570 1.20721 1.19407 1.21701 0.93438 0.92847 1.50477 0.92894 1.19025 0.94254 0.92148 0.95855 1.21281 0.97908 0.92684 1.01103 1.21923 0.97648 0.90169 1.07666 1.21310 0.90281 0.84065 0.71536 1.90896 1.17955 1.84181 1.45689 1.54767 1.25579 1.19432 1.80622 1.01327 0.72724 0.72374 0.71722 1.93630 1.62462 1.84182 1.53521 1.93702 1.69369 1.42567 1.86026 1.35228 1.01223 1.12747 1.22614 1.23244 0.98568 0.94284 0.88516 1.20783 1.01801 1.11775 0.93735 1.19362 0.78470 0.75731 0.85026 1.90928 1.40052 1.37094 1.75624 1.84477 1.46196 1.71162 1.29603 1.26246 0.97854 0.90422 0.80156 1.84105 1.32256 1.55295 1.29549 0.92760 0.97828 0.97707 0.93241 0.93504 0.85529 0.85272 0.69989 0.78467 0.69690 0.71124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.60 13.29 21.45 0.28 -54.31 16 2 C 0.00 0.23 5.46 84.66 0.46 0.70 16 3 Si 0.96 43.73 29.54 68.60 2.03 45.75 16 4 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 5 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 6 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 7 C -0.55 -30.51 9.11 25.60 0.23 -30.27 16 8 H 0.05 2.91 7.74 -2.91 -0.02 2.88 16 9 C 0.02 1.19 4.97 29.85 0.15 1.34 16 10 C -0.09 -3.51 4.44 30.59 0.14 -3.37 16 11 C -0.13 -3.40 5.70 29.85 0.17 -3.23 16 12 C 0.54 13.62 7.66 87.66 0.67 14.29 16 13 O -0.52 -17.26 14.81 13.29 0.20 -17.07 16 14 N -1.03 -17.76 5.70 -173.54 -0.99 -18.75 16 15 S 2.73 58.61 5.53 -56.49 -0.31 58.30 16 16 O -0.95 -28.63 16.97 -120.84 -2.05 -30.68 16 17 O -0.93 -19.69 17.81 -128.00 -2.28 -21.97 16 18 C -0.59 -12.69 6.92 66.89 0.46 -12.22 16 19 C -0.03 -0.48 10.70 23.66 0.25 -0.23 16 20 C -0.28 -5.00 6.31 -19.01 -0.12 -5.12 16 21 C 0.57 9.85 8.33 70.19 0.58 10.44 16 22 O -0.54 -12.95 17.77 19.71 0.35 -12.60 16 23 O -0.50 -4.77 13.28 -56.75 -0.75 -5.52 16 24 C 0.13 1.97 11.94 67.41 0.80 2.77 16 25 O -0.12 -2.73 10.48 4.72 0.05 -2.68 16 26 H 0.26 14.63 8.31 -92.71 -0.77 13.85 16 27 H 0.00 0.17 8.14 -2.39 -0.02 0.15 16 28 H 0.00 0.23 8.14 -2.38 -0.02 0.21 16 29 H 0.05 1.95 8.10 -2.39 -0.02 1.93 16 30 H 0.05 1.90 8.10 -2.39 -0.02 1.88 16 31 H 0.13 2.69 8.14 -2.39 -0.02 2.67 16 32 H 0.13 2.63 8.14 -2.38 -0.02 2.61 16 33 H 0.46 3.59 8.83 -96.74 -0.85 2.74 16 34 H 0.20 2.95 8.06 -2.91 -0.02 2.92 16 35 H 0.44 0.34 9.11 -74.05 -0.67 -0.34 16 36 H 0.27 1.49 8.06 -2.91 -0.02 1.46 16 Total: -1.00 -85.72 346.92 -0.04 -85.76 By element: Atomic # 1 Polarization: -0.96 SS G_CDS: -0.36 Total: -1.33 kcal Atomic # 6 Polarization: -28.71 SS G_CDS: 3.81 Total: -24.90 kcal Atomic # 7 Polarization: -72.36 SS G_CDS: -0.70 Total: -73.07 kcal Atomic # 8 Polarization: -86.02 SS G_CDS: -4.49 Total: -90.51 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.75 kcal Atomic # 16 Polarization: 58.61 SS G_CDS: -0.31 Total: 58.30 kcal Total: -85.72 -0.04 -85.76 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601064888.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -138.541 kcal (2) G-P(sol) polarization free energy of solvation -85.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -224.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -224.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds