Wall clock time and date at job start Tue Mar 31 2020 16:08:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30633 * 1 3 3 Si 1.86802 * 120.00293 * 2 1 4 4 H 1.48498 * 109.47030 * 89.99570 * 3 2 1 5 5 H 1.48501 * 109.47347 * 209.99935 * 3 2 1 6 6 H 1.48503 * 109.46842 * 330.00021 * 3 2 1 7 7 C 1.40310 * 120.00112 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00585 * 189.85314 * 7 2 1 9 9 C 1.40541 * 119.99843 * 9.85994 * 7 2 1 10 10 C 1.44186 * 123.71447 * 23.51109 * 9 7 2 11 11 C 1.32774 * 114.43102 * 180.02562 * 10 9 7 12 12 S 1.75465 * 111.35919 * 0.02562 * 11 10 9 13 13 C 1.39541 * 123.71563 * 203.22332 * 9 7 2 14 14 C 1.46243 * 125.22875 * 359.97438 * 13 9 7 15 15 O 1.21762 * 119.99685 * 0.02562 * 14 13 9 16 16 N 1.34776 * 120.00015 * 179.97438 * 14 13 9 17 17 C 1.46501 * 119.99679 * 179.97438 * 16 14 13 18 18 C 1.52996 * 109.46939 * 180.02562 * 17 16 14 19 19 H 1.08997 * 115.55620 * 29.41753 * 18 17 16 20 20 C 1.53003 * 117.50003 * 175.09242 * 18 17 16 21 21 H 1.08998 * 117.49731 * 214.98267 * 20 18 17 22 22 C 1.50697 * 117.49781 * 359.97438 * 20 18 17 23 23 O 1.20833 * 119.99804 * 0.02562 * 22 20 18 24 24 O 1.34228 * 120.00429 * 180.02562 * 22 20 18 25 25 C 1.53008 * 117.49935 * 243.74914 * 18 17 16 26 26 F 1.39905 * 117.49692 * 359.97438 * 25 18 17 27 27 F 1.39896 * 117.49939 * 144.99582 * 25 18 17 28 28 H 0.97002 * 119.99839 * 0.02562 * 1 2 3 29 29 H 1.08003 * 122.78487 * 0.02562 * 10 9 7 30 30 H 1.08002 * 124.31476 * 180.02562 * 11 10 9 31 31 H 0.96996 * 120.00047 * 0.02562 * 16 14 13 32 32 H 1.08999 * 109.47321 * 300.00609 * 17 16 14 33 33 H 1.09003 * 109.47094 * 60.00417 * 17 16 14 34 34 H 0.96695 * 117.00568 * 180.02562 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2404 1.6177 0.0000 4 1 2.4878 2.0464 1.4001 5 1 3.5380 1.4401 -0.7000 6 1 1.4378 2.6527 -0.7001 7 6 2.0079 -1.2151 0.0005 8 1 3.0760 -1.2220 0.1606 9 6 1.3208 -2.4233 -0.2073 10 6 0.0550 -2.5167 -0.8915 11 6 -0.4298 -3.7493 -0.9838 12 16 0.6412 -4.9155 -0.2275 13 6 1.7911 -3.6654 0.2206 14 6 3.0466 -3.8913 0.9357 15 8 3.7731 -2.9512 1.2021 16 7 3.3989 -5.1399 1.3009 17 6 4.6569 -5.3662 2.0168 18 6 4.8154 -6.8595 2.3097 19 1 4.3446 -7.5319 1.5926 20 6 6.1257 -7.3180 2.9531 21 1 6.5167 -8.2921 2.6594 22 6 7.1616 -6.2643 3.2492 23 8 6.9407 -5.1074 2.9792 24 8 8.3295 -6.6108 3.8127 25 6 4.8358 -7.2934 3.7769 26 9 4.7086 -6.2941 4.7478 27 9 4.2486 -8.5226 4.0951 28 1 -0.4850 0.8401 -0.0004 29 1 -0.4564 -1.6554 -1.2954 30 1 -1.3640 -4.0018 -1.4633 31 1 2.8199 -5.8888 1.0890 32 1 5.4907 -5.0262 1.4026 33 1 4.6462 -4.8108 2.9546 34 1 8.9623 -5.9001 3.9840 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601078802.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:08:21 Heat of formation + Delta-G solvation = -189.960980 kcal Electronic energy + Delta-G solvation = -25406.516831 eV Core-core repulsion = 21066.846223 eV Total energy + Delta-G solvation = -4339.670608 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 331.052 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.98939 -48.65514 -41.64621 -40.17608 -38.33419 -37.71524 -36.95714 -34.93153 -34.89404 -30.96414 -29.31398 -27.40957 -26.18090 -23.95995 -22.83665 -22.02696 -21.63829 -20.62289 -19.75009 -19.34132 -18.80402 -18.25046 -17.74809 -17.42253 -17.25735 -16.94284 -16.44584 -16.12913 -15.92378 -15.75547 -15.35913 -15.20392 -14.86177 -14.79130 -14.25598 -14.19789 -14.16531 -13.87636 -13.69404 -13.33312 -13.15713 -12.96547 -12.75406 -12.68482 -12.41589 -12.07803 -12.02772 -11.75746 -11.43198 -11.21273 -11.07303 -10.40138 -9.98252 -9.34878 -8.92930 -8.86374 -6.45472 0.30966 0.59004 1.32457 1.33549 1.37738 1.47054 1.56112 1.77552 1.78266 1.93402 1.97925 2.16770 2.27202 2.53964 3.01858 3.22648 3.23894 3.31678 3.83138 4.07751 4.22282 4.37666 4.39947 4.57684 4.72151 4.97937 5.02935 5.28229 5.39573 5.45830 5.57700 5.67030 5.83792 6.39591 6.57050 6.71178 6.81609 6.95436 7.72473 8.06801 Molecular weight = 331.05amu Principal moments of inertia in cm(-1) A = 0.014511 B = 0.003507 C = 0.002981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1929.068747 B = 7981.795944 C = 9391.048650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.792 5.792 2 C 0.036 3.964 3 Si 0.988 3.012 4 H -0.267 1.267 5 H -0.265 1.265 6 H -0.245 1.245 7 C -0.418 4.418 8 H 0.082 0.918 9 C 0.112 3.888 10 C -0.130 4.130 11 C -0.190 4.190 12 S 0.017 5.983 13 C -0.469 4.469 14 C 0.590 3.410 15 O -0.603 6.603 16 N -0.736 5.736 17 C 0.162 3.838 18 C -0.122 4.122 19 H 0.190 0.810 20 C -0.131 4.131 21 H 0.215 0.785 22 C 0.504 3.496 23 O -0.525 6.525 24 O -0.497 6.497 25 C 0.222 3.778 26 F -0.167 7.167 27 F -0.141 7.141 28 H 0.301 0.699 29 H 0.141 0.859 30 H 0.178 0.822 31 H 0.402 0.598 32 H 0.074 0.926 33 H 0.049 0.951 34 H 0.435 0.565 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.338 -14.593 3.078 17.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.416 5.416 2 C -0.184 4.184 3 Si 0.808 3.192 4 H -0.192 1.192 5 H -0.189 1.189 6 H -0.169 1.169 7 C -0.449 4.449 8 H 0.100 0.900 9 C 0.101 3.899 10 C -0.162 4.162 11 C -0.324 4.324 12 S 0.272 5.728 13 C -0.588 4.588 14 C 0.387 3.613 15 O -0.489 6.489 16 N -0.390 5.390 17 C 0.039 3.961 18 C -0.141 4.141 19 H 0.207 0.793 20 C -0.151 4.151 21 H 0.232 0.768 22 C 0.346 3.654 23 O -0.413 6.413 24 O -0.311 6.311 25 C 0.185 3.815 26 F -0.147 7.147 27 F -0.121 7.121 28 H 0.113 0.887 29 H 0.159 0.841 30 H 0.195 0.805 31 H 0.238 0.762 32 H 0.092 0.908 33 H 0.067 0.933 34 H 0.298 0.702 Dipole moment (debyes) X Y Z Total from point charges 8.238 -15.361 3.385 17.756 hybrid contribution 0.344 2.508 0.311 2.551 sum 8.582 -12.852 3.696 15.890 Atomic orbital electron populations 1.69642 1.08713 1.31929 1.31359 1.27024 0.95810 1.04780 0.90764 0.85116 0.79131 0.75333 0.79665 1.19150 1.18912 1.16853 1.20030 0.96884 0.90873 1.37126 0.89989 1.18392 0.90946 0.92372 0.88232 1.21604 0.96352 0.97280 1.00966 1.25466 1.04234 0.96140 1.06599 1.82177 1.15620 1.11449 1.63537 1.23026 1.06246 0.97440 1.32075 1.17057 0.84522 0.82065 0.77680 1.90643 1.55236 1.43313 1.59702 1.45644 1.23575 1.08366 1.61427 1.20670 0.86511 0.92140 0.96817 1.24079 0.97272 0.98694 0.94092 0.79316 1.23476 0.87270 1.03264 1.01106 0.76823 1.22091 0.82283 0.87432 0.73587 1.90915 1.78872 1.22253 1.49299 1.84401 1.26938 1.46744 1.73068 1.19864 0.99085 0.76149 0.86376 1.93054 1.96420 1.59927 1.65317 1.93095 1.84623 1.40461 1.93946 0.88742 0.84136 0.80451 0.76207 0.90816 0.93274 0.70182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -39.02 10.82 21.89 0.24 -38.79 16 2 C 0.04 1.84 5.39 85.38 0.46 2.30 16 3 Si 0.99 39.47 29.57 68.60 2.03 41.50 16 4 H -0.27 -10.67 7.11 99.48 0.71 -9.96 16 5 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 6 H -0.25 -8.58 7.11 99.48 0.71 -7.87 16 7 C -0.42 -24.09 8.52 23.34 0.20 -23.89 16 8 H 0.08 5.09 6.03 -2.91 -0.02 5.07 16 9 C 0.11 6.22 5.68 -20.89 -0.12 6.10 16 10 C -0.13 -6.34 9.04 22.60 0.20 -6.14 16 11 C -0.19 -7.87 11.07 66.64 0.74 -7.13 16 12 S 0.02 0.67 22.25 -56.49 -1.26 -0.58 16 13 C -0.47 -24.40 6.51 24.67 0.16 -24.24 16 14 C 0.59 30.56 7.76 86.32 0.67 31.23 16 15 O -0.60 -36.18 14.45 -4.55 -0.07 -36.24 16 16 N -0.74 -28.88 5.55 -467.47 -2.59 -31.47 16 17 C 0.16 5.55 4.20 86.38 0.36 5.92 16 18 C -0.12 -2.55 5.83 -10.79 -0.06 -2.61 16 19 H 0.19 2.51 8.04 -2.39 -0.02 2.49 16 20 C -0.13 -2.08 6.29 -11.52 -0.07 -2.16 16 21 H 0.21 1.27 8.14 -2.39 -0.02 1.26 16 22 C 0.50 10.48 7.73 71.23 0.55 11.03 16 23 O -0.52 -16.16 13.87 21.94 0.30 -15.85 16 24 O -0.50 -6.78 13.42 -51.40 -0.69 -7.47 16 25 C 0.22 4.75 5.14 30.62 0.16 4.91 16 26 F -0.17 -4.83 16.01 44.97 0.72 -4.11 16 27 F -0.14 -2.75 17.60 44.97 0.79 -1.96 16 28 H 0.30 13.02 8.29 -92.71 -0.77 12.25 16 29 H 0.14 6.87 6.40 -2.91 -0.02 6.86 16 30 H 0.18 5.79 8.06 -2.91 -0.02 5.77 16 31 H 0.40 13.26 7.48 -92.71 -0.69 12.57 16 32 H 0.07 2.78 6.93 -2.39 -0.02 2.76 16 33 H 0.05 2.00 6.48 -2.39 -0.02 1.99 16 34 H 0.44 2.69 9.10 -74.06 -0.67 2.01 16 Total: -1.00 -77.23 322.97 2.58 -74.66 By element: Atomic # 1 Polarization: 25.16 SS G_CDS: -0.15 Total: 25.01 kcal Atomic # 6 Polarization: -7.93 SS G_CDS: 3.25 Total: -4.68 kcal Atomic # 7 Polarization: -67.90 SS G_CDS: -2.36 Total: -70.26 kcal Atomic # 8 Polarization: -59.12 SS G_CDS: -0.45 Total: -59.57 kcal Atomic # 9 Polarization: -7.58 SS G_CDS: 1.51 Total: -6.07 kcal Atomic # 14 Polarization: 39.47 SS G_CDS: 2.03 Total: 41.50 kcal Atomic # 16 Polarization: 0.67 SS G_CDS: -1.26 Total: -0.58 kcal Total: -77.23 2.58 -74.66 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601078802.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.305 kcal (2) G-P(sol) polarization free energy of solvation -77.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -192.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.656 kcal (6) G-S(sol) free energy of system = (1) + (5) -189.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds