Wall clock time and date at job start Tue Mar 31 2020 17:07:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.29549 * 118.73127 * 2 1 4 4 S 1.66083 * 119.34095 * 180.24077 * 3 2 1 5 5 O 1.42098 * 106.68563 * 221.21246 * 4 3 2 6 6 O 1.42107 * 106.67815 * 87.54490 * 4 3 2 7 7 N 1.66389 * 105.40217 * 334.38217 * 4 3 2 8 8 C 1.46491 * 121.37065 * 220.38232 * 7 4 3 9 9 C 1.36397 * 117.25794 * 40.65138 * 7 4 3 10 10 C 1.37787 * 119.59330 * 330.06011 * 9 7 4 11 11 C 1.46719 * 118.59882 * 179.49402 * 10 9 7 12 12 O 1.21727 * 120.00092 * 262.00867 * 11 10 9 13 13 N 1.34778 * 119.99992 * 82.00172 * 11 10 9 14 14 C 1.36975 * 119.99879 * 185.83450 * 13 11 10 15 15 H 1.08006 * 120.00415 * 344.47138 * 14 13 11 16 16 C 1.38959 * 120.00032 * 164.47169 * 14 13 11 17 17 N 1.31428 * 119.99617 * 0.64514 * 16 14 13 18 18 Si 1.86797 * 120.00224 * 180.64739 * 16 14 13 19 19 H 1.48507 * 109.47174 * 359.97438 * 18 16 14 20 20 H 1.48500 * 109.47422 * 119.99621 * 18 16 14 21 21 H 1.48499 * 109.47207 * 240.00241 * 18 16 14 22 22 C 1.46499 * 119.99912 * 5.83302 * 13 11 10 23 23 C 1.50700 * 109.47160 * 267.78282 * 22 13 11 24 24 O 1.20824 * 120.00093 * 359.97438 * 23 22 13 25 25 O 1.34229 * 119.99593 * 180.02562 * 23 22 13 26 26 H 1.09002 * 109.46917 * 355.03155 * 1 2 3 27 27 H 1.08995 * 109.46728 * 115.03121 * 1 2 3 28 28 H 1.09004 * 109.47206 * 235.03096 * 1 2 3 29 29 H 1.09005 * 109.47315 * 89.99751 * 8 7 4 30 30 H 1.09002 * 109.47314 * 330.00198 * 8 7 4 31 31 H 1.09001 * 109.47356 * 209.99587 * 8 7 4 32 32 H 1.08005 * 120.11451 * 150.27178 * 9 7 4 33 33 H 0.97000 * 119.99946 * 180.02562 * 17 16 14 34 34 H 1.08995 * 109.46891 * 27.78241 * 22 13 11 35 35 H 1.08997 * 109.46693 * 147.78074 * 22 13 11 36 36 H 0.96704 * 116.99726 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1298 1.1360 0.0000 4 16 3.7905 1.1537 -0.0061 5 8 4.1909 2.1801 0.8913 6 8 4.1939 1.1024 -1.3677 7 7 4.2503 -0.2894 0.6829 8 6 5.3757 -0.3637 1.6178 9 6 3.5399 -1.4012 0.3370 10 6 2.2091 -1.2810 0.0007 11 6 1.4687 -2.4895 -0.3787 12 8 1.3065 -2.7600 -1.5544 13 7 0.9681 -3.3002 0.5746 14 6 0.3819 -4.4878 0.2251 15 1 0.0929 -4.6663 -0.8002 16 6 0.1591 -5.4630 1.1895 17 7 0.4992 -5.2408 2.4394 18 14 -0.6239 -7.0897 0.7096 19 1 -0.9115 -7.0898 -0.7473 20 1 0.3071 -8.2011 1.0309 21 1 -1.8903 -7.2710 1.4636 22 6 1.0511 -2.9112 1.9846 23 6 2.3111 -3.4760 2.5882 24 8 3.0625 -4.1362 1.9103 25 8 2.5981 -3.2466 3.8792 26 1 -0.3633 1.0238 0.0890 27 1 -0.3632 -0.4348 -0.9311 28 1 -0.3634 -0.5890 0.8422 29 1 5.0139 -0.2115 2.6347 30 1 6.1040 0.4090 1.3718 31 1 5.8464 -1.3440 1.5425 32 1 4.0181 -2.3696 0.3307 33 1 0.3440 -5.9217 3.1127 34 1 1.0672 -1.8241 2.0611 35 1 0.1853 -3.3004 2.5203 36 1 3.4173 -3.6298 4.2216 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001604618718.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:07:22 Heat of formation + Delta-G solvation = -126.448457 kcal Electronic energy + Delta-G solvation = -28173.488559 eV Core-core repulsion = 23979.952328 eV Total energy + Delta-G solvation = -4193.536231 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 331.076 amu Computer time = 2.05 seconds Orbital eigenvalues (eV) -40.13346 -39.04571 -37.89309 -37.24668 -36.41738 -35.83438 -35.43679 -34.67718 -32.11427 -30.86388 -29.87519 -27.92850 -26.81258 -24.94000 -23.55889 -21.71508 -21.20396 -19.91122 -18.75765 -17.74963 -17.51112 -17.35079 -16.95877 -16.60756 -15.74642 -15.65756 -15.19616 -14.77333 -14.61289 -14.39955 -14.32189 -13.85267 -13.79010 -13.46854 -13.15376 -12.91929 -12.61110 -12.24026 -12.15004 -12.07137 -12.01272 -11.99510 -11.87214 -11.62067 -11.39980 -11.14891 -11.06066 -10.60807 -10.58412 -10.47813 -9.93785 -9.84749 -9.28379 -9.05825 -8.54206 -8.22382 -6.62143 -4.18177 0.21609 0.51165 1.98175 2.44500 2.95363 3.13651 3.19590 3.23289 3.34769 3.44623 3.72973 3.97145 4.03598 4.27272 4.52192 4.57646 4.89674 4.95386 5.02796 5.04959 5.30331 5.37542 5.38519 5.53248 5.60642 5.73373 5.77477 6.09099 6.22911 6.31079 6.63121 6.71944 7.30246 7.33952 7.69264 8.10716 8.79761 8.86259 9.02648 9.51500 10.39881 Molecular weight = 331.08amu Principal moments of inertia in cm(-1) A = 0.019197 B = 0.004997 C = 0.004454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1458.245287 B = 5602.536227 C = 6284.511027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.394 3.606 3 N -0.917 5.917 4 S 2.688 3.312 5 O -0.951 6.951 6 O -0.967 6.967 7 N -0.944 5.944 8 C 0.083 3.917 9 C 0.242 3.758 10 C -0.311 4.311 11 C 0.515 3.485 12 O -0.560 6.560 13 N -0.417 5.417 14 C -0.288 4.288 15 H 0.114 0.886 16 C 0.031 3.969 17 N -0.898 5.898 18 Si 0.942 3.058 19 H -0.266 1.266 20 H -0.281 1.281 21 H -0.279 1.279 22 C 0.141 3.859 23 C 0.498 3.502 24 O -0.521 6.521 25 O -0.531 6.531 26 H 0.094 0.906 27 H 0.110 0.890 28 H 0.102 0.898 29 H 0.079 0.921 30 H 0.083 0.917 31 H 0.089 0.911 32 H 0.177 0.823 33 H 0.274 0.726 34 H 0.067 0.933 35 H 0.153 0.847 36 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.627 5.567 5.288 8.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.221 3.779 3 N -0.755 5.755 4 S 2.697 3.303 5 O -0.935 6.935 6 O -0.948 6.948 7 N -0.762 5.762 8 C -0.061 4.061 9 C 0.113 3.887 10 C -0.327 4.327 11 C 0.301 3.699 12 O -0.442 6.442 13 N -0.135 5.135 14 C -0.415 4.415 15 H 0.132 0.868 16 C -0.169 4.169 17 N -0.540 5.540 18 Si 0.769 3.231 19 H -0.190 1.190 20 H -0.207 1.207 21 H -0.205 1.205 22 C 0.015 3.985 23 C 0.340 3.660 24 O -0.409 6.409 25 O -0.341 6.341 26 H 0.113 0.887 27 H 0.128 0.872 28 H 0.121 0.879 29 H 0.098 0.902 30 H 0.101 0.899 31 H 0.108 0.892 32 H 0.194 0.806 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.170 0.830 36 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges 3.027 7.052 4.226 8.761 hybrid contribution 0.748 -2.084 0.524 2.276 sum 3.775 4.967 4.749 7.841 Atomic orbital electron populations 1.21427 0.86890 1.05444 1.05647 1.22530 0.98470 0.84957 0.71984 1.74999 1.29101 1.32936 1.38492 1.05864 0.76927 0.72852 0.74695 1.93632 1.82434 1.52732 1.64674 1.93687 1.82324 1.84795 1.34015 1.56080 1.40420 1.25225 1.54458 1.21882 0.86848 1.04803 0.92542 1.22624 0.88706 0.93354 0.83972 1.21547 0.93651 0.97338 1.20134 1.16838 0.83365 0.83701 0.86018 1.90723 1.61135 1.74982 1.17336 1.43416 1.48893 1.18385 1.02846 1.19927 1.34066 0.90134 0.97373 0.86838 1.25298 0.97016 0.99816 0.94808 1.69536 1.47754 1.35343 1.01408 0.85589 0.78137 0.80314 0.79085 1.19019 1.20664 1.20535 1.21069 0.96814 0.96223 0.84350 1.23724 0.86398 0.77262 0.78646 1.90577 1.50482 1.37376 1.62422 1.84547 1.46269 1.73350 1.29961 0.88726 0.87218 0.87925 0.90218 0.89876 0.89192 0.80587 0.91489 0.91546 0.83032 0.75333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 44. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.74 9.28 36.01 0.33 -1.41 16 2 C 0.39 6.38 6.75 -80.41 -0.54 5.83 16 3 N -0.92 -15.43 10.93 34.77 0.38 -15.05 16 4 S 2.69 45.97 6.15 -107.50 -0.66 45.31 16 5 O -0.95 -17.20 17.50 -57.12 -1.00 -18.20 16 6 O -0.97 -19.51 18.15 -57.12 -1.04 -20.54 16 7 N -0.94 -13.58 3.35 -67.12 -0.23 -13.80 16 8 C 0.08 0.85 10.42 59.84 0.62 1.47 16 9 C 0.24 3.91 9.34 -15.69 -0.15 3.76 16 10 C -0.31 -5.55 3.77 -103.50 -0.39 -5.94 16 11 C 0.51 10.98 5.95 -12.83 -0.08 10.90 16 12 O -0.56 -13.92 16.74 5.16 0.09 -13.84 16 13 N -0.42 -9.02 2.12 -117.55 -0.25 -9.27 16 14 C -0.29 -6.91 9.45 -14.99 -0.14 -7.05 16 15 H 0.11 2.86 7.24 -52.48 -0.38 2.48 16 16 C 0.03 0.71 5.37 -17.46 -0.09 0.62 16 17 N -0.90 -20.41 8.09 55.50 0.45 -19.96 16 18 Si 0.94 18.89 29.55 -169.99 -5.02 13.87 16 19 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 20 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 21 H -0.28 -5.46 7.11 56.52 0.40 -5.06 16 22 C 0.14 2.66 5.06 -5.19 -0.03 2.64 16 23 C 0.50 9.49 5.72 36.01 0.21 9.70 16 24 O -0.52 -11.40 16.23 -18.75 -0.30 -11.71 16 25 O -0.53 -8.26 13.42 -39.26 -0.53 -8.78 16 26 H 0.09 1.03 8.09 -51.93 -0.42 0.61 16 27 H 0.11 1.46 8.09 -51.93 -0.42 1.04 16 28 H 0.10 1.19 7.57 -51.93 -0.39 0.80 16 29 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.08 0.75 7.99 -51.93 -0.41 0.33 16 31 H 0.09 0.75 8.07 -51.93 -0.42 0.33 16 32 H 0.18 2.81 7.37 -52.48 -0.39 2.42 16 33 H 0.27 6.07 8.31 -40.82 -0.34 5.73 16 34 H 0.07 1.04 6.24 -51.93 -0.32 0.71 16 35 H 0.15 3.02 6.11 -51.93 -0.32 2.70 16 36 H 0.39 4.47 9.10 45.56 0.41 4.89 16 LS Contribution 327.00 15.07 4.93 4.93 Total: -1.00 -33.56 327.00 -6.05 -39.61 By element: Atomic # 1 Polarization: 9.52 SS G_CDS: -2.62 Total: 6.91 kcal Atomic # 6 Polarization: 20.78 SS G_CDS: -0.25 Total: 20.52 kcal Atomic # 7 Polarization: -58.44 SS G_CDS: 0.36 Total: -58.09 kcal Atomic # 8 Polarization: -70.28 SS G_CDS: -2.78 Total: -73.07 kcal Atomic # 14 Polarization: 18.89 SS G_CDS: -5.02 Total: 13.87 kcal Atomic # 16 Polarization: 45.97 SS G_CDS: -0.66 Total: 45.31 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -33.56 -6.05 -39.61 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604618718.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.834 kcal (2) G-P(sol) polarization free energy of solvation -33.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.05 seconds