Wall clock time and date at job start Tue Mar 31 2020 17:07:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.29549 * 118.73127 * 2 1 4 4 S 1.66083 * 119.34095 * 180.24077 * 3 2 1 5 5 O 1.42098 * 106.68563 * 221.21246 * 4 3 2 6 6 O 1.42107 * 106.67815 * 87.54490 * 4 3 2 7 7 N 1.66389 * 105.40217 * 334.38217 * 4 3 2 8 8 C 1.46491 * 121.37065 * 220.38232 * 7 4 3 9 9 C 1.36397 * 117.25794 * 40.65138 * 7 4 3 10 10 C 1.37787 * 119.59330 * 330.06011 * 9 7 4 11 11 C 1.46719 * 118.59882 * 179.49402 * 10 9 7 12 12 O 1.21727 * 120.00092 * 262.00867 * 11 10 9 13 13 N 1.34778 * 119.99992 * 82.00172 * 11 10 9 14 14 C 1.36975 * 119.99879 * 185.83450 * 13 11 10 15 15 H 1.08006 * 120.00415 * 344.47138 * 14 13 11 16 16 C 1.38959 * 120.00032 * 164.47169 * 14 13 11 17 17 N 1.31428 * 119.99617 * 0.64514 * 16 14 13 18 18 Si 1.86797 * 120.00224 * 180.64739 * 16 14 13 19 19 H 1.48507 * 109.47174 * 359.97438 * 18 16 14 20 20 H 1.48500 * 109.47422 * 119.99621 * 18 16 14 21 21 H 1.48499 * 109.47207 * 240.00241 * 18 16 14 22 22 C 1.46499 * 119.99912 * 5.83302 * 13 11 10 23 23 C 1.50700 * 109.47160 * 267.78282 * 22 13 11 24 24 O 1.20824 * 120.00093 * 359.97438 * 23 22 13 25 25 O 1.34229 * 119.99593 * 180.02562 * 23 22 13 26 26 H 1.09002 * 109.46917 * 355.03155 * 1 2 3 27 27 H 1.08995 * 109.46728 * 115.03121 * 1 2 3 28 28 H 1.09004 * 109.47206 * 235.03096 * 1 2 3 29 29 H 1.09005 * 109.47315 * 89.99751 * 8 7 4 30 30 H 1.09002 * 109.47314 * 330.00198 * 8 7 4 31 31 H 1.09001 * 109.47356 * 209.99587 * 8 7 4 32 32 H 1.08005 * 120.11451 * 150.27178 * 9 7 4 33 33 H 0.97000 * 119.99946 * 180.02562 * 17 16 14 34 34 H 1.08995 * 109.46891 * 27.78241 * 22 13 11 35 35 H 1.08997 * 109.46693 * 147.78074 * 22 13 11 36 36 H 0.96704 * 116.99726 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1298 1.1360 0.0000 4 16 3.7905 1.1537 -0.0061 5 8 4.1909 2.1801 0.8913 6 8 4.1939 1.1024 -1.3677 7 7 4.2503 -0.2894 0.6829 8 6 5.3757 -0.3637 1.6178 9 6 3.5399 -1.4012 0.3370 10 6 2.2091 -1.2810 0.0007 11 6 1.4687 -2.4895 -0.3787 12 8 1.3065 -2.7600 -1.5544 13 7 0.9681 -3.3002 0.5746 14 6 0.3819 -4.4878 0.2251 15 1 0.0929 -4.6663 -0.8002 16 6 0.1591 -5.4630 1.1895 17 7 0.4992 -5.2408 2.4394 18 14 -0.6239 -7.0897 0.7096 19 1 -0.9115 -7.0898 -0.7473 20 1 0.3071 -8.2011 1.0309 21 1 -1.8903 -7.2710 1.4636 22 6 1.0511 -2.9112 1.9846 23 6 2.3111 -3.4760 2.5882 24 8 3.0625 -4.1362 1.9103 25 8 2.5981 -3.2466 3.8792 26 1 -0.3633 1.0238 0.0890 27 1 -0.3632 -0.4348 -0.9311 28 1 -0.3634 -0.5890 0.8422 29 1 5.0139 -0.2115 2.6347 30 1 6.1040 0.4090 1.3718 31 1 5.8464 -1.3440 1.5425 32 1 4.0181 -2.3696 0.3307 33 1 0.3440 -5.9217 3.1127 34 1 1.0672 -1.8241 2.0611 35 1 0.1853 -3.3004 2.5203 36 1 3.4173 -3.6298 4.2216 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001604618718.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:07:21 Heat of formation + Delta-G solvation = -153.013357 kcal Electronic energy + Delta-G solvation = -28174.640499 eV Core-core repulsion = 23979.952328 eV Total energy + Delta-G solvation = -4194.688172 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 331.076 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.61397 -40.45387 -39.39296 -38.64386 -37.68641 -37.23661 -36.98470 -36.26766 -33.80076 -32.22319 -30.98813 -29.49535 -27.95333 -26.51435 -24.85019 -23.12678 -22.62264 -21.38952 -20.05207 -19.12712 -19.08368 -18.82649 -18.41926 -17.99519 -17.24761 -17.09364 -16.51832 -16.27753 -16.07545 -15.92788 -15.57087 -15.15814 -15.01412 -14.86195 -14.59147 -14.26013 -13.88974 -13.62771 -13.60627 -13.56995 -13.50811 -13.13190 -13.08992 -12.94165 -12.78365 -12.69841 -12.37455 -12.20734 -12.09235 -12.04934 -11.48063 -11.29583 -10.92744 -10.68588 -9.94600 -9.88868 -8.36160 -5.98006 -1.10033 -0.77376 0.66046 1.14699 1.36692 1.49659 1.60529 1.69620 1.91045 2.04917 2.19787 2.53894 2.65962 2.91941 3.04849 3.20772 3.33188 3.67426 3.87785 4.05791 4.23903 4.29576 4.30648 4.43747 4.60167 4.61594 4.65169 4.93428 4.96419 5.11235 5.13740 5.46917 5.48769 5.98594 6.02884 6.37748 7.07366 7.27452 7.50463 7.83439 8.62476 Molecular weight = 331.08amu Principal moments of inertia in cm(-1) A = 0.019197 B = 0.004997 C = 0.004454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1458.245287 B = 5602.536227 C = 6284.511027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.396 3.604 3 N -0.922 5.922 4 S 2.697 3.303 5 O -0.961 6.961 6 O -1.003 7.003 7 N -0.934 5.934 8 C 0.065 3.935 9 C 0.261 3.739 10 C -0.332 4.332 11 C 0.519 3.481 12 O -0.606 6.606 13 N -0.420 5.420 14 C -0.317 4.317 15 H 0.089 0.911 16 C 0.007 3.993 17 N -0.899 5.899 18 Si 0.992 3.008 19 H -0.274 1.274 20 H -0.287 1.287 21 H -0.266 1.266 22 C 0.138 3.862 23 C 0.504 3.496 24 O -0.553 6.553 25 O -0.519 6.519 26 H 0.117 0.883 27 H 0.105 0.895 28 H 0.118 0.882 29 H 0.098 0.902 30 H 0.096 0.904 31 H 0.112 0.888 32 H 0.180 0.820 33 H 0.276 0.724 34 H 0.101 0.899 35 H 0.144 0.856 36 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.831 5.798 7.184 9.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.223 3.777 3 N -0.760 5.760 4 S 2.707 3.293 5 O -0.945 6.945 6 O -0.984 6.984 7 N -0.751 5.751 8 C -0.077 4.077 9 C 0.131 3.869 10 C -0.348 4.348 11 C 0.306 3.694 12 O -0.492 6.492 13 N -0.137 5.137 14 C -0.444 4.444 15 H 0.107 0.893 16 C -0.193 4.193 17 N -0.540 5.540 18 Si 0.817 3.183 19 H -0.198 1.198 20 H -0.213 1.213 21 H -0.191 1.191 22 C 0.013 3.987 23 C 0.347 3.653 24 O -0.443 6.443 25 O -0.331 6.331 26 H 0.136 0.864 27 H 0.123 0.877 28 H 0.136 0.864 29 H 0.117 0.883 30 H 0.115 0.885 31 H 0.131 0.869 32 H 0.197 0.803 33 H 0.086 0.914 34 H 0.119 0.881 35 H 0.161 0.839 36 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges 3.252 7.312 6.202 10.124 hybrid contribution 0.766 -2.175 0.045 2.307 sum 4.018 5.137 6.247 9.031 Atomic orbital electron populations 1.21574 0.84764 1.07246 1.05904 1.22781 0.99719 0.84024 0.71142 1.75037 1.28544 1.32824 1.39641 1.05447 0.76973 0.72992 0.73915 1.93612 1.82793 1.53482 1.64583 1.93647 1.83045 1.85516 1.36193 1.55959 1.41061 1.23739 1.54380 1.22364 0.86015 1.06782 0.92495 1.22628 0.88232 0.93778 0.82274 1.21270 0.94326 0.96671 1.22582 1.17142 0.82722 0.84253 0.85240 1.90687 1.62917 1.76324 1.19265 1.43448 1.48472 1.17696 1.04119 1.19795 1.35985 0.91857 0.96752 0.89267 1.25830 0.97049 1.01571 0.94853 1.69624 1.47297 1.35674 1.01426 0.84856 0.77778 0.77205 0.78429 1.19840 1.21288 1.19073 1.21146 0.96612 0.98261 0.82707 1.23613 0.85969 0.76400 0.79330 1.90574 1.51536 1.38772 1.63447 1.84476 1.47573 1.73034 1.27987 0.86403 0.87723 0.86404 0.88313 0.88527 0.86947 0.80301 0.91350 0.88126 0.83910 0.72872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.32 9.28 71.24 0.66 -2.66 16 2 C 0.40 12.32 6.75 44.93 0.30 12.62 16 3 N -0.92 -29.75 10.93 -43.90 -0.48 -30.23 16 4 S 2.70 88.96 6.15 -56.49 -0.35 88.61 16 5 O -0.96 -33.17 17.50 -128.05 -2.24 -35.41 16 6 O -1.00 -40.11 18.15 -128.05 -2.32 -42.43 16 7 N -0.93 -25.03 3.35 -366.26 -1.23 -26.26 16 8 C 0.06 1.14 10.42 127.77 1.33 2.48 16 9 C 0.26 8.07 9.34 83.88 0.78 8.86 16 10 C -0.33 -11.60 3.77 -19.14 -0.07 -11.67 16 11 C 0.52 22.29 5.95 86.46 0.51 22.80 16 12 O -0.61 -31.12 16.74 -4.44 -0.07 -31.19 16 13 N -0.42 -18.15 2.12 -644.04 -1.36 -19.51 16 14 C -0.32 -15.40 9.45 84.06 0.79 -14.60 16 15 H 0.09 4.69 7.24 -2.91 -0.02 4.67 16 16 C 0.01 0.32 5.37 84.93 0.46 0.77 16 17 N -0.90 -39.80 8.09 21.67 0.18 -39.62 16 18 Si 0.99 38.43 29.55 68.60 2.03 40.45 16 19 H -0.27 -10.86 7.11 99.48 0.71 -10.15 16 20 H -0.29 -11.34 7.11 99.48 0.71 -10.64 16 21 H -0.27 -9.66 7.11 99.48 0.71 -8.95 16 22 C 0.14 4.99 5.06 85.63 0.43 5.42 16 23 C 0.50 18.20 5.72 71.24 0.41 18.61 16 24 O -0.55 -23.46 16.23 21.97 0.36 -23.10 16 25 O -0.52 -14.52 13.42 -51.41 -0.69 -15.21 16 26 H 0.12 2.30 8.09 -2.39 -0.02 2.28 16 27 H 0.10 2.74 8.09 -2.39 -0.02 2.72 16 28 H 0.12 2.51 7.57 -2.39 -0.02 2.49 16 29 H 0.10 1.41 8.14 -2.38 -0.02 1.40 16 30 H 0.10 1.48 7.99 -2.39 -0.02 1.46 16 31 H 0.11 1.51 8.07 -2.39 -0.02 1.49 16 32 H 0.18 5.50 7.37 -2.91 -0.02 5.48 16 33 H 0.28 11.77 8.31 -92.71 -0.77 11.00 16 34 H 0.10 2.90 6.24 -2.39 -0.01 2.89 16 35 H 0.14 5.49 6.11 -2.39 -0.01 5.47 16 36 H 0.41 8.02 9.10 -74.05 -0.67 7.35 16 Total: -1.00 -72.23 327.00 -0.09 -72.32 By element: Atomic # 1 Polarization: 18.47 SS G_CDS: 0.49 Total: 18.96 kcal Atomic # 6 Polarization: 37.02 SS G_CDS: 5.61 Total: 42.63 kcal Atomic # 7 Polarization: -112.73 SS G_CDS: -2.90 Total: -115.62 kcal Atomic # 8 Polarization: -142.38 SS G_CDS: -4.97 Total: -147.35 kcal Atomic # 14 Polarization: 38.43 SS G_CDS: 2.03 Total: 40.45 kcal Atomic # 16 Polarization: 88.96 SS G_CDS: -0.35 Total: 88.61 kcal Total: -72.23 -0.09 -72.32 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604618718.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.696 kcal (2) G-P(sol) polarization free energy of solvation -72.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds