Wall clock time and date at job start Tue Mar 31 2020 16:45:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30599 * 1 3 3 Si 1.86799 * 120.00408 * 2 1 4 4 H 1.48489 * 109.47309 * 274.67659 * 3 2 1 5 5 H 1.48498 * 109.46791 * 34.67620 * 3 2 1 6 6 H 1.48494 * 109.47107 * 154.67191 * 3 2 1 7 7 C 1.40392 * 119.99731 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99972 * 169.91669 * 7 2 1 9 9 C 1.40434 * 119.99808 * 349.91811 * 7 2 1 10 10 C 1.39674 * 123.37218 * 334.72343 * 9 7 2 11 11 C 1.32870 * 115.28159 * 179.97438 * 10 9 7 12 12 S 1.75647 * 110.88775 * 359.76759 * 11 10 9 13 13 C 1.39798 * 123.37093 * 154.69643 * 9 7 2 14 14 C 1.41639 * 125.45889 * 359.97438 * 13 9 7 15 15 O 1.21727 * 120.00012 * 359.97438 * 14 13 9 16 16 N 1.34774 * 119.99531 * 179.97438 * 14 13 9 17 17 N 1.39967 * 125.96239 * 0.04162 * 16 14 13 18 18 C 1.30561 * 109.01846 * 179.70077 * 17 16 14 19 19 C 1.40944 * 108.50287 * 0.41006 * 18 17 16 20 20 C 1.48337 * 126.33474 * 179.84980 * 19 18 17 21 21 N 1.33714 * 126.31824 * 179.71374 * 20 19 18 22 22 N 1.28571 * 109.85097 * 179.73666 * 21 20 19 23 23 N 1.28925 * 109.73054 * 0.02562 * 22 21 20 24 24 H 0.96998 * 126.42553 * 180.02562 * 23 22 21 25 25 N 1.32034 * 126.31015 * 359.40567 * 20 19 18 26 26 C 1.36419 * 125.95603 * 179.97438 * 16 14 13 27 27 N 1.38584 * 126.47111 * 0.02562 * 26 16 14 28 28 H 0.97002 * 119.99638 * 359.97438 * 1 2 3 29 29 H 1.08000 * 122.36422 * 359.95573 * 10 9 7 30 30 H 1.08006 * 124.55618 * 179.97438 * 11 10 9 31 31 H 1.07995 * 125.74880 * 180.27789 * 18 17 16 32 32 H 0.96996 * 120.00663 * 180.02562 * 27 26 16 33 33 H 0.97008 * 119.99707 * 0.03729 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3060 0.0000 0.0000 3 14 2.2401 1.6177 0.0000 4 1 2.3888 2.1034 -1.3953 5 1 1.4905 2.6220 0.7966 6 1 3.5835 1.4135 0.5989 7 6 2.0079 -1.2159 -0.0005 8 1 3.0754 -1.2231 -0.1643 9 6 1.3219 -2.4227 0.2118 10 6 0.1157 -2.5081 0.9109 11 6 -0.3939 -3.7307 1.0160 12 16 0.6324 -4.9082 0.2126 13 6 1.7776 -3.6588 -0.2558 14 6 2.9677 -3.8700 -0.9942 15 8 3.6878 -2.9283 -1.2704 16 7 3.3027 -5.1137 -1.3910 17 7 2.5700 -6.2805 -1.1443 18 6 3.1919 -7.2950 -1.6816 19 6 4.3692 -6.8233 -2.2964 20 6 5.3711 -7.6426 -3.0212 21 7 6.4853 -7.1940 -3.6089 22 7 7.1249 -8.1754 -4.1388 23 7 6.4840 -9.2749 -3.9321 24 1 6.7496 -10.1603 -4.2261 25 7 5.3300 -8.9501 -3.2002 26 6 4.4144 -5.4547 -2.1043 27 7 5.4025 -4.5923 -2.5520 28 1 -0.4850 0.8401 0.0004 29 1 -0.3684 -1.6416 1.3365 30 1 -1.3171 -3.9680 1.5239 31 1 2.8611 -8.3227 -1.6572 32 1 6.1567 -4.9379 -3.0546 33 1 5.3400 -3.6430 -2.3625 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001606351532.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:45:46 Heat of formation + Delta-G solvation = 191.882082 kcal Electronic energy + Delta-G solvation = -24677.969507 eV Core-core repulsion = 20870.131546 eV Total energy + Delta-G solvation = -3807.837961 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 331.059 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.03846 -41.25051 -38.07578 -36.31255 -34.62355 -33.61894 -33.35055 -32.85507 -31.45763 -29.19385 -28.31897 -26.90098 -24.48575 -23.91598 -22.62267 -22.02630 -20.42857 -19.83985 -18.89420 -18.65942 -17.51367 -16.52921 -16.43434 -16.07292 -15.64529 -15.40333 -15.36024 -14.77385 -14.28558 -13.96298 -13.77947 -12.98397 -12.97613 -12.65063 -12.59503 -12.18172 -12.03827 -11.59081 -11.29019 -11.17816 -11.06471 -10.93192 -10.85826 -10.73199 -10.67215 -10.43777 -10.17859 -9.71675 -9.24775 -8.97417 -8.90889 -7.61072 -7.52112 -7.28307 -7.19364 -4.76093 0.93944 1.49715 1.98887 2.18946 2.38980 2.73767 2.82865 2.85375 2.93412 3.25114 3.37852 3.56208 3.69987 3.73261 4.03517 4.10060 4.17559 4.32519 4.92366 5.06027 5.37352 5.55815 5.79152 5.90631 6.07070 6.43867 6.52873 6.54795 6.60067 6.95715 7.13406 7.22939 7.42583 7.50415 7.52320 7.87843 8.07983 8.14049 8.26084 8.33654 8.45454 8.92308 9.57687 Molecular weight = 331.06amu Principal moments of inertia in cm(-1) A = 0.019129 B = 0.003487 C = 0.002970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1463.386412 B = 8028.549963 C = 9424.798821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.753 5.753 2 C 0.062 3.938 3 Si 0.929 3.071 4 H -0.262 1.262 5 H -0.271 1.271 6 H -0.252 1.252 7 C -0.350 4.350 8 H 0.114 0.886 9 C 0.140 3.860 10 C -0.120 4.120 11 C -0.216 4.216 12 S 0.050 5.950 13 C -0.420 4.420 14 C 0.598 3.402 15 O -0.539 6.539 16 N -0.367 5.367 17 N -0.271 5.271 18 C 0.129 3.871 19 C -0.281 4.281 20 C 0.321 3.679 21 N -0.324 5.324 22 N 0.005 4.995 23 N -0.307 5.307 24 H 0.466 0.534 25 N -0.312 5.312 26 C 0.447 3.553 27 N -0.817 5.817 28 H 0.294 0.706 29 H 0.139 0.861 30 H 0.137 0.863 31 H 0.192 0.808 32 H 0.420 0.580 33 H 0.420 0.580 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.832 -9.073 -3.384 11.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.376 5.376 2 C -0.162 4.162 3 Si 0.752 3.248 4 H -0.187 1.187 5 H -0.195 1.195 6 H -0.175 1.175 7 C -0.380 4.380 8 H 0.131 0.869 9 C 0.129 3.871 10 C -0.152 4.152 11 C -0.351 4.351 12 S 0.307 5.693 13 C -0.539 4.539 14 C 0.410 3.590 15 O -0.421 6.421 16 N -0.169 5.169 17 N -0.090 5.090 18 C -0.065 4.065 19 C -0.303 4.303 20 C 0.042 3.958 21 N -0.203 5.203 22 N 0.009 4.991 23 N -0.154 5.154 24 H 0.319 0.681 25 N -0.156 5.156 26 C 0.214 3.786 27 N -0.367 5.367 28 H 0.105 0.895 29 H 0.157 0.843 30 H 0.155 0.845 31 H 0.208 0.792 32 H 0.254 0.746 33 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges 5.329 -9.518 -3.314 11.400 hybrid contribution 0.932 1.512 -0.416 1.825 sum 6.261 -8.006 -3.730 10.826 Atomic orbital electron populations 1.69672 1.08270 1.31078 1.28593 1.26523 0.95068 1.02997 0.91656 0.85912 0.80751 0.78314 0.79871 1.18688 1.19521 1.17549 1.20287 0.97869 0.89087 1.30764 0.86857 1.16957 0.90471 0.91514 0.88188 1.20499 0.96954 0.96677 1.01100 1.25704 1.04019 0.98793 1.06577 1.83785 1.16687 1.09691 1.59144 1.21572 1.06163 0.97571 1.28576 1.15634 0.86258 0.77372 0.79766 1.90603 1.53941 1.37969 1.59581 1.47670 1.16472 1.09046 1.43747 1.77204 1.17922 0.89520 1.24316 1.23708 0.90677 0.99028 0.93049 1.16409 1.01845 0.88784 1.23215 1.22499 0.91691 0.88041 0.93591 1.75232 1.06955 1.22548 1.15604 1.78210 1.18542 0.89541 1.12803 1.50910 1.14812 1.10853 1.38818 0.68089 1.78919 1.04605 1.14135 1.17975 1.18494 0.83836 0.89257 0.87043 1.42338 1.23637 1.10661 1.60020 0.89489 0.84319 0.84516 0.79158 0.74649 0.74506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -17.03 10.87 55.57 0.60 -16.42 16 2 C 0.06 1.41 5.37 -17.27 -0.09 1.31 16 3 Si 0.93 17.01 29.58 -169.99 -5.03 11.98 16 4 H -0.26 -4.81 7.11 56.52 0.40 -4.41 16 5 H -0.27 -4.70 7.11 56.52 0.40 -4.30 16 6 H -0.25 -4.66 7.11 56.52 0.40 -4.26 16 7 C -0.35 -8.78 8.41 -37.94 -0.32 -9.10 16 8 H 0.11 2.91 6.06 -52.49 -0.32 2.60 16 9 C 0.14 3.58 5.53 -107.95 -0.60 2.99 16 10 C -0.12 -2.82 8.81 -40.90 -0.36 -3.18 16 11 C -0.22 -4.63 11.11 28.88 0.32 -4.31 16 12 S 0.05 1.10 20.55 -107.50 -2.21 -1.11 16 13 C -0.42 -10.55 6.33 -37.70 -0.24 -10.79 16 14 C 0.60 14.55 7.64 -14.96 -0.11 14.43 16 15 O -0.54 -13.36 12.56 5.17 0.06 -13.29 16 16 N -0.37 -7.85 3.64 -13.51 -0.05 -7.90 16 17 N -0.27 -5.35 9.55 30.80 0.29 -5.05 16 18 C 0.13 2.10 11.97 -17.07 -0.20 1.90 16 19 C -0.28 -4.73 6.15 -104.70 -0.64 -5.37 16 20 C 0.32 4.89 8.14 -156.43 -1.27 3.61 16 21 N -0.32 -4.73 10.70 32.11 0.34 -4.39 16 22 N 0.01 0.07 13.42 60.35 0.81 0.88 16 23 N -0.31 -3.07 8.44 60.35 0.51 -2.56 16 24 H 0.47 2.36 8.96 -331.91 -2.98 -0.62 16 25 N -0.31 -4.13 12.90 32.12 0.41 -3.71 16 26 C 0.45 8.35 7.93 -152.19 -1.21 7.14 16 27 N -0.82 -13.42 9.01 31.60 0.28 -13.13 16 28 H 0.29 5.87 8.29 -40.82 -0.34 5.53 16 29 H 0.14 3.23 6.38 -52.49 -0.33 2.89 16 30 H 0.14 2.48 8.06 -52.48 -0.42 2.06 16 31 H 0.19 2.37 8.06 -52.49 -0.42 1.95 16 32 H 0.42 6.02 7.23 -40.82 -0.29 5.72 16 33 H 0.42 7.19 6.67 -40.82 -0.27 6.92 16 LS Contribution 309.65 15.07 4.67 4.67 Total: -1.00 -29.12 309.65 -8.20 -37.32 By element: Atomic # 1 Polarization: 18.26 SS G_CDS: -4.17 Total: 14.09 kcal Atomic # 6 Polarization: 3.37 SS G_CDS: -4.73 Total: -1.36 kcal Atomic # 7 Polarization: -55.50 SS G_CDS: 3.21 Total: -52.29 kcal Atomic # 8 Polarization: -13.36 SS G_CDS: 0.06 Total: -13.29 kcal Atomic # 14 Polarization: 17.01 SS G_CDS: -5.03 Total: 11.98 kcal Atomic # 16 Polarization: 1.10 SS G_CDS: -2.21 Total: -1.11 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -29.12 -8.20 -37.32 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001606351532.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 229.203 kcal (2) G-P(sol) polarization free energy of solvation -29.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 200.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.321 kcal (6) G-S(sol) free energy of system = (1) + (5) 191.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds