Wall clock time and date at job start Tue Mar 31 2020 16:45:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30599 * 1 3 3 Si 1.86799 * 120.00408 * 2 1 4 4 H 1.48489 * 109.47309 * 274.67659 * 3 2 1 5 5 H 1.48498 * 109.46791 * 34.67620 * 3 2 1 6 6 H 1.48494 * 109.47107 * 154.67191 * 3 2 1 7 7 C 1.40392 * 119.99731 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99972 * 169.91669 * 7 2 1 9 9 C 1.40434 * 119.99808 * 349.91811 * 7 2 1 10 10 C 1.39674 * 123.37218 * 334.72343 * 9 7 2 11 11 C 1.32870 * 115.28159 * 179.97438 * 10 9 7 12 12 S 1.75647 * 110.88775 * 359.76759 * 11 10 9 13 13 C 1.39798 * 123.37093 * 154.69643 * 9 7 2 14 14 C 1.41639 * 125.45889 * 359.97438 * 13 9 7 15 15 O 1.21727 * 120.00012 * 359.97438 * 14 13 9 16 16 N 1.34774 * 119.99531 * 179.97438 * 14 13 9 17 17 N 1.39967 * 125.96239 * 0.04162 * 16 14 13 18 18 C 1.30561 * 109.01846 * 179.70077 * 17 16 14 19 19 C 1.40944 * 108.50287 * 0.41006 * 18 17 16 20 20 C 1.48337 * 126.33474 * 179.84980 * 19 18 17 21 21 N 1.33714 * 126.31824 * 179.71374 * 20 19 18 22 22 N 1.28571 * 109.85097 * 179.73666 * 21 20 19 23 23 N 1.28925 * 109.73054 * 0.02562 * 22 21 20 24 24 H 0.96998 * 126.42553 * 180.02562 * 23 22 21 25 25 N 1.32034 * 126.31015 * 359.40567 * 20 19 18 26 26 C 1.36419 * 125.95603 * 179.97438 * 16 14 13 27 27 N 1.38584 * 126.47111 * 0.02562 * 26 16 14 28 28 H 0.97002 * 119.99638 * 359.97438 * 1 2 3 29 29 H 1.08000 * 122.36422 * 359.95573 * 10 9 7 30 30 H 1.08006 * 124.55618 * 179.97438 * 11 10 9 31 31 H 1.07995 * 125.74880 * 180.27789 * 18 17 16 32 32 H 0.96996 * 120.00663 * 180.02562 * 27 26 16 33 33 H 0.97008 * 119.99707 * 0.03729 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3060 0.0000 0.0000 3 14 2.2401 1.6177 0.0000 4 1 2.3888 2.1034 -1.3953 5 1 1.4905 2.6220 0.7966 6 1 3.5835 1.4135 0.5989 7 6 2.0079 -1.2159 -0.0005 8 1 3.0754 -1.2231 -0.1643 9 6 1.3219 -2.4227 0.2118 10 6 0.1157 -2.5081 0.9109 11 6 -0.3939 -3.7307 1.0160 12 16 0.6324 -4.9082 0.2126 13 6 1.7776 -3.6588 -0.2558 14 6 2.9677 -3.8700 -0.9942 15 8 3.6878 -2.9283 -1.2704 16 7 3.3027 -5.1137 -1.3910 17 7 2.5700 -6.2805 -1.1443 18 6 3.1919 -7.2950 -1.6816 19 6 4.3692 -6.8233 -2.2964 20 6 5.3711 -7.6426 -3.0212 21 7 6.4853 -7.1940 -3.6089 22 7 7.1249 -8.1754 -4.1388 23 7 6.4840 -9.2749 -3.9321 24 1 6.7496 -10.1603 -4.2261 25 7 5.3300 -8.9501 -3.2002 26 6 4.4144 -5.4547 -2.1043 27 7 5.4025 -4.5923 -2.5520 28 1 -0.4850 0.8401 0.0004 29 1 -0.3684 -1.6416 1.3365 30 1 -1.3171 -3.9680 1.5239 31 1 2.8611 -8.3227 -1.6572 32 1 6.1567 -4.9379 -3.0546 33 1 5.3400 -3.6430 -2.3625 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001606351532.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:45:46 Heat of formation + Delta-G solvation = 172.096967 kcal Electronic energy + Delta-G solvation = -24678.827454 eV Core-core repulsion = 20870.131546 eV Total energy + Delta-G solvation = -3808.695908 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 331.059 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -44.09750 -42.72682 -39.80148 -38.06637 -35.96105 -35.08593 -34.82333 -33.94077 -32.90480 -30.93806 -29.68524 -28.62115 -25.56576 -25.44225 -23.98991 -23.57616 -21.80635 -21.34219 -20.64400 -19.75324 -19.06695 -18.23331 -17.51579 -17.43093 -17.25455 -16.94832 -16.92957 -16.19660 -15.79151 -15.45914 -15.03125 -14.63213 -14.41117 -14.27900 -14.20649 -13.76314 -13.24879 -13.19511 -12.95618 -12.79838 -12.37880 -12.28677 -12.21045 -12.05896 -11.91395 -11.76596 -11.74792 -11.34646 -10.98114 -10.68325 -10.46147 -9.38769 -9.00064 -8.97679 -8.82592 -6.57876 -0.23107 -0.01699 0.58877 1.01858 1.13246 1.32709 1.35378 1.41132 1.49806 1.57571 1.89415 1.98142 2.11491 2.13098 2.43334 2.69964 2.88981 3.15338 3.23334 3.65540 4.03747 4.38740 4.43088 4.52297 4.69002 4.82465 4.89043 5.14159 5.22634 5.39999 5.62231 5.65131 5.82022 5.84572 6.15535 6.26985 6.39141 6.51104 6.60277 6.81056 7.15839 7.19972 7.92746 Molecular weight = 331.06amu Principal moments of inertia in cm(-1) A = 0.019129 B = 0.003487 C = 0.002970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1463.386412 B = 8028.549963 C = 9424.798821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.771 5.771 2 C 0.032 3.968 3 Si 0.995 3.005 4 H -0.261 1.261 5 H -0.248 1.248 6 H -0.260 1.260 7 C -0.383 4.383 8 H 0.095 0.905 9 C 0.116 3.884 10 C -0.144 4.144 11 C -0.204 4.204 12 S 0.082 5.918 13 C -0.461 4.461 14 C 0.594 3.406 15 O -0.560 6.560 16 N -0.384 5.384 17 N -0.304 5.304 18 C 0.147 3.853 19 C -0.274 4.274 20 C 0.307 3.693 21 N -0.344 5.344 22 N 0.008 4.992 23 N -0.274 5.274 24 H 0.487 0.513 25 N -0.306 5.306 26 C 0.428 3.572 27 N -0.809 5.809 28 H 0.307 0.693 29 H 0.137 0.863 30 H 0.173 0.827 31 H 0.231 0.769 32 H 0.429 0.571 33 H 0.416 0.584 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.017 -10.598 -3.851 12.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.394 5.394 2 C -0.191 4.191 3 Si 0.814 3.186 4 H -0.186 1.186 5 H -0.172 1.172 6 H -0.184 1.184 7 C -0.412 4.412 8 H 0.113 0.887 9 C 0.104 3.896 10 C -0.177 4.177 11 C -0.339 4.339 12 S 0.339 5.661 13 C -0.579 4.579 14 C 0.404 3.596 15 O -0.443 6.443 16 N -0.186 5.186 17 N -0.123 5.123 18 C -0.045 4.045 19 C -0.295 4.295 20 C 0.027 3.973 21 N -0.222 5.222 22 N 0.012 4.988 23 N -0.126 5.126 24 H 0.346 0.654 25 N -0.151 5.151 26 C 0.196 3.804 27 N -0.358 5.358 28 H 0.119 0.881 29 H 0.155 0.845 30 H 0.191 0.809 31 H 0.247 0.753 32 H 0.265 0.735 33 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges 5.535 -11.112 -3.811 12.986 hybrid contribution 0.964 1.690 -0.388 1.984 sum 6.499 -9.422 -4.199 12.192 Atomic orbital electron populations 1.69647 1.09129 1.32719 1.27923 1.27232 0.95842 1.05234 0.90814 0.84976 0.79184 0.74522 0.79955 1.18566 1.17159 1.18355 1.20350 0.97369 0.90608 1.32915 0.88702 1.17362 0.91533 0.92060 0.88613 1.20463 0.97184 0.97570 1.02488 1.26141 1.04645 0.97966 1.05125 1.83474 1.15530 1.08555 1.58537 1.22010 1.07568 0.98793 1.29574 1.15681 0.86076 0.78253 0.79555 1.90562 1.54454 1.39062 1.60231 1.47349 1.17711 1.08688 1.44823 1.77156 1.19064 0.89638 1.26438 1.24364 0.89639 0.99848 0.90680 1.16494 1.02239 0.88084 1.22669 1.22251 0.91953 0.88549 0.94577 1.75221 1.07113 1.23562 1.16314 1.78179 1.18275 0.89726 1.12600 1.50929 1.13285 1.11593 1.36746 0.65376 1.78858 1.05419 1.13088 1.17695 1.18819 0.83739 0.90368 0.87432 1.42279 1.23529 1.10258 1.59744 0.88108 0.84527 0.80935 0.75255 0.73519 0.75026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -35.18 10.87 21.90 0.24 -34.94 16 2 C 0.03 1.45 5.37 85.40 0.46 1.91 16 3 Si 1.00 35.11 29.58 68.60 2.03 37.13 16 4 H -0.26 -9.10 7.11 99.48 0.71 -8.39 16 5 H -0.25 -7.80 7.11 99.48 0.71 -7.10 16 6 H -0.26 -9.38 7.11 99.48 0.71 -8.67 16 7 C -0.38 -20.08 8.41 23.33 0.20 -19.89 16 8 H 0.10 5.19 6.06 -2.91 -0.02 5.18 16 9 C 0.12 6.15 5.53 -22.02 -0.12 6.03 16 10 C -0.14 -6.93 8.81 21.44 0.19 -6.74 16 11 C -0.20 -8.60 11.11 66.64 0.74 -7.86 16 12 S 0.08 3.60 20.55 -56.49 -1.16 2.44 16 13 C -0.46 -23.92 6.33 23.49 0.15 -23.78 16 14 C 0.59 30.05 7.64 85.08 0.65 30.70 16 15 O -0.56 -29.23 12.56 -4.43 -0.06 -29.28 16 16 N -0.38 -16.75 3.64 -314.86 -1.15 -17.89 16 17 N -0.30 -11.90 9.55 -56.45 -0.54 -12.43 16 18 C 0.15 4.56 11.97 85.54 1.02 5.58 16 19 C -0.27 -8.89 6.15 -19.92 -0.12 -9.01 16 20 C 0.31 8.73 8.14 137.37 1.12 9.85 16 21 N -0.34 -9.45 10.70 -52.32 -0.56 -10.01 16 22 N 0.01 0.18 13.42 37.02 0.50 0.68 16 23 N -0.27 -4.58 8.44 37.02 0.31 -4.27 16 24 H 0.49 3.11 8.96 -340.34 -3.05 0.05 16 25 N -0.31 -7.15 12.90 -52.28 -0.67 -7.83 16 26 C 0.43 16.13 7.93 131.76 1.05 17.17 16 27 N -0.81 -27.10 9.01 -53.94 -0.49 -27.59 16 28 H 0.31 12.14 8.29 -92.71 -0.77 11.37 16 29 H 0.14 6.49 6.38 -2.91 -0.02 6.47 16 30 H 0.17 5.87 8.06 -2.91 -0.02 5.85 16 31 H 0.23 4.98 8.06 -2.91 -0.02 4.95 16 32 H 0.43 12.35 7.23 -92.71 -0.67 11.68 16 33 H 0.42 14.87 6.67 -92.70 -0.62 14.25 16 Total: -1.00 -65.09 309.65 0.71 -64.38 By element: Atomic # 1 Polarization: 38.71 SS G_CDS: -3.07 Total: 35.64 kcal Atomic # 6 Polarization: -1.36 SS G_CDS: 5.33 Total: 3.97 kcal Atomic # 7 Polarization: -111.92 SS G_CDS: -2.36 Total: -114.28 kcal Atomic # 8 Polarization: -29.23 SS G_CDS: -0.06 Total: -29.28 kcal Atomic # 14 Polarization: 35.11 SS G_CDS: 2.03 Total: 37.13 kcal Atomic # 16 Polarization: 3.60 SS G_CDS: -1.16 Total: 2.44 kcal Total: -65.09 0.71 -64.38 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001606351532.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 236.479 kcal (2) G-P(sol) polarization free energy of solvation -65.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 171.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.382 kcal (6) G-S(sol) free energy of system = (1) + (5) 172.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds