Wall clock time and date at job start Tue Mar 31 2020 16:21:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35648 * 116.99998 * 2 1 4 4 C 1.38555 * 120.12471 * 0.25438 * 3 2 1 5 5 C 1.38231 * 120.23930 * 180.25878 * 4 3 2 6 6 C 1.38263 * 120.50208 * 359.76288 * 5 4 3 7 7 S 1.76202 * 119.88072 * 179.97438 * 6 5 4 8 8 O 1.42105 * 106.39812 * 0.19778 * 7 6 5 9 9 O 1.42101 * 106.40321 * 133.11523 * 7 6 5 10 10 N 1.65599 * 107.22141 * 246.65924 * 7 6 5 11 11 C 1.36940 * 120.00227 * 65.25225 * 10 7 6 12 12 H 1.07999 * 119.99928 * 4.84950 * 11 10 7 13 13 C 1.38812 * 120.00040 * 184.85040 * 11 10 7 14 14 N 1.31621 * 120.00052 * 359.97438 * 13 11 10 15 15 Si 1.86791 * 120.00011 * 180.02562 * 13 11 10 16 16 H 1.48503 * 109.47329 * 59.99738 * 15 13 11 17 17 H 1.48501 * 109.47355 * 179.97438 * 15 13 11 18 18 H 1.48505 * 109.47276 * 300.00164 * 15 13 11 19 19 C 1.38518 * 120.24357 * 359.97438 * 6 5 4 20 20 O 1.35649 * 120.12628 * 179.97438 * 19 6 5 21 21 C 1.42900 * 116.99682 * 270.01907 * 20 19 6 22 22 C 1.40294 * 120.12590 * 180.02562 * 3 2 1 23 23 C 1.47090 * 120.24205 * 359.97438 * 22 3 2 24 24 O 1.21546 * 119.99704 * 269.72819 * 23 22 3 25 25 O 1.34785 * 119.99829 * 89.45118 * 23 22 3 26 26 H 1.09001 * 109.47162 * 299.99807 * 1 2 3 27 27 H 1.08998 * 109.47221 * 60.00019 * 1 2 3 28 28 H 1.09001 * 109.47604 * 180.02562 * 1 2 3 29 29 H 1.07998 * 119.88037 * 359.97438 * 4 3 2 30 30 H 1.08003 * 119.74648 * 179.74415 * 5 4 3 31 31 H 0.97005 * 119.99462 * 245.25795 * 10 7 6 32 32 H 0.96991 * 119.99992 * 179.97438 * 14 13 11 33 33 H 1.08995 * 109.47392 * 59.99332 * 21 20 19 34 34 H 1.08997 * 109.47295 * 179.97438 * 21 20 19 35 35 H 1.09009 * 109.46688 * 299.99523 * 21 20 19 36 36 H 0.96700 * 117.00259 * 0.27617 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2086 0.0000 4 6 1.2927 2.3723 0.0053 5 6 1.9178 3.6052 -0.0001 6 6 3.2976 3.6924 -0.0059 7 16 4.0773 5.2725 -0.0134 8 8 3.0323 6.2355 -0.0071 9 8 5.0944 5.2229 0.9778 10 7 4.8504 5.4309 -1.4692 11 6 4.1234 5.4814 -2.6286 12 1 3.0442 5.4969 -2.5891 13 6 4.7735 5.5126 -3.8547 14 7 6.0887 5.4941 -3.9029 15 14 3.7819 5.5822 -5.4361 16 1 2.9453 6.8092 -5.4423 17 1 4.7054 5.6075 -6.5988 18 1 2.9065 4.3859 -5.5246 19 6 4.0694 2.5422 -0.0058 20 8 5.4230 2.6305 -0.0120 21 6 6.0647 2.6694 -1.2883 22 6 3.4456 1.2851 -0.0005 23 6 4.2546 0.0567 -0.0005 24 8 4.5934 -0.4478 1.0521 25 8 4.6155 -0.5125 -1.1678 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 0.2142 2.3159 0.0091 30 1 1.3237 4.5072 0.0000 31 1 5.8182 5.4878 -1.5007 32 1 6.5430 5.5156 -4.7596 33 1 5.7119 3.5368 -1.8461 34 1 7.1436 2.7406 -1.1505 35 1 5.8279 1.7606 -1.8417 36 1 4.3225 -0.0749 -1.9788 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001607286398.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:21:53 Heat of formation + Delta-G solvation = -193.624904 kcal Electronic energy + Delta-G solvation = -27809.114454 eV Core-core repulsion = 23580.372483 eV Total energy + Delta-G solvation = -4228.741972 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 331.070 amu Computer time = 1.52 seconds Orbital eigenvalues (eV) -40.95480 -39.32460 -38.80374 -36.61942 -36.29124 -35.96730 -34.85340 -34.79224 -31.39076 -31.14292 -29.99805 -27.73881 -26.69948 -24.73347 -24.34873 -22.48479 -21.69406 -19.47708 -18.60808 -18.31178 -17.95744 -17.23376 -16.87514 -16.51260 -16.25600 -15.98605 -15.72417 -15.23143 -15.07968 -14.84615 -14.61407 -14.29507 -13.87650 -13.71207 -13.34012 -13.08514 -12.86089 -12.66520 -12.11053 -11.80360 -11.54783 -11.46117 -11.42602 -11.19474 -11.18159 -11.07355 -10.97934 -10.73978 -10.67509 -10.42701 -10.19458 -9.98063 -9.67625 -8.98318 -8.65217 -8.44041 -6.65372 -4.10727 0.85559 0.92541 1.45159 2.24863 2.75312 3.05327 3.11188 3.12036 3.15437 3.37355 3.85518 3.91572 4.32056 4.37822 4.61327 4.63987 4.77627 4.86128 4.94332 4.97300 5.16559 5.25940 5.37798 5.47278 5.60533 5.72736 5.82980 5.99752 6.18238 6.20182 6.35515 6.88193 6.93993 7.24785 7.30738 7.45596 7.69585 8.48630 8.60106 9.05279 10.49534 Molecular weight = 331.07amu Principal moments of inertia in cm(-1) A = 0.011966 B = 0.005485 C = 0.005336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2339.465717 B = 5103.384642 C = 5245.957812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.312 6.312 3 C 0.213 3.787 4 C -0.241 4.241 5 C 0.050 3.950 6 C -0.715 4.715 7 S 2.617 3.383 8 O -0.973 6.973 9 O -0.981 6.981 10 N -0.951 5.951 11 C -0.281 4.281 12 H 0.105 0.895 13 C 0.035 3.965 14 N -0.875 5.875 15 Si 0.921 3.079 16 H -0.270 1.270 17 H -0.281 1.281 18 H -0.273 1.273 19 C 0.279 3.721 20 O -0.331 6.331 21 C 0.008 3.992 22 C -0.260 4.260 23 C 0.568 3.432 24 O -0.454 6.454 25 O -0.504 6.504 26 H 0.062 0.938 27 H 0.063 0.937 28 H 0.104 0.896 29 H 0.143 0.857 30 H 0.153 0.847 31 H 0.413 0.587 32 H 0.277 0.723 33 H 0.104 0.896 34 H 0.104 0.896 35 H 0.042 0.958 36 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.042 -7.870 -0.461 11.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.224 6.224 3 C 0.165 3.835 4 C -0.261 4.261 5 C 0.030 3.970 6 C -0.794 4.794 7 S 2.706 3.294 8 O -0.963 6.963 9 O -0.970 6.970 10 N -0.705 5.705 11 C -0.421 4.421 12 H 0.122 0.878 13 C -0.174 4.174 14 N -0.516 5.516 15 Si 0.747 3.253 16 H -0.195 1.195 17 H -0.206 1.206 18 H -0.198 1.198 19 C 0.233 3.767 20 O -0.247 6.247 21 C -0.085 4.085 22 C -0.263 4.263 23 C 0.407 3.593 24 O -0.337 6.337 25 O -0.314 6.314 26 H 0.081 0.919 27 H 0.082 0.918 28 H 0.123 0.877 29 H 0.160 0.840 30 H 0.171 0.829 31 H 0.251 0.749 32 H 0.087 0.913 33 H 0.122 0.878 34 H 0.122 0.878 35 H 0.061 0.939 36 H 0.273 0.727 Dipole moment (debyes) X Y Z Total from point charges -8.522 -8.197 1.293 11.895 hybrid contribution -0.833 -0.318 -1.778 1.989 sum -9.356 -8.515 -0.485 12.660 Atomic orbital electron populations 1.23205 0.77134 1.04528 1.02129 1.86042 1.22528 1.26494 1.87301 1.18732 0.89847 0.84839 0.90044 1.21266 1.00431 0.91826 1.12553 1.20852 0.92338 0.98091 0.85671 1.32257 1.04517 1.24607 1.18030 1.06311 0.73330 0.75391 0.74372 1.93462 1.58073 1.57396 1.87336 1.93483 1.57116 1.87295 1.59142 1.51776 1.17482 1.79861 1.21377 1.19292 0.91974 1.47458 0.83359 0.87767 1.25252 0.95832 0.97067 0.99211 1.69662 1.07035 1.47382 1.27531 0.86068 0.79272 0.79297 0.80622 1.19490 1.20645 1.19790 1.17654 0.83460 0.88731 0.86897 1.86026 1.13933 1.93791 1.30980 1.23750 0.98763 1.03704 0.82303 1.19767 0.91688 0.94666 1.20205 1.19659 0.75765 0.81076 0.82837 1.90860 1.51815 1.63233 1.27839 1.84527 1.73354 1.56119 1.17405 0.91932 0.91819 0.87734 0.83980 0.82936 0.74914 0.91268 0.87799 0.87767 0.93901 0.72673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.81 101.05 0.99 1.18 16 2 O -0.31 -4.01 9.95 -18.64 -0.19 -4.20 16 3 C 0.21 3.14 6.70 -38.69 -0.26 2.88 16 4 C -0.24 -3.23 9.02 -39.47 -0.36 -3.59 16 5 C 0.05 0.79 9.53 -39.57 -0.38 0.41 16 6 C -0.72 -13.59 5.84 -39.47 -0.23 -13.82 16 7 S 2.62 56.34 5.31 -107.50 -0.57 55.76 16 8 O -0.97 -22.21 16.61 -57.17 -0.95 -23.16 16 9 O -0.98 -23.45 17.19 -63.13 -1.09 -24.54 16 10 N -0.95 -20.84 3.73 31.50 0.12 -20.72 16 11 C -0.28 -6.30 9.26 -15.06 -0.14 -6.44 16 12 H 0.10 2.24 7.78 -52.49 -0.41 1.83 16 13 C 0.03 0.78 5.50 -17.43 -0.10 0.68 16 14 N -0.88 -20.34 13.06 55.49 0.72 -19.61 16 15 Si 0.92 17.62 29.55 -169.99 -5.02 12.59 16 16 H -0.27 -5.22 7.11 56.52 0.40 -4.82 16 17 H -0.28 -5.41 7.11 56.52 0.40 -5.01 16 18 H -0.27 -5.04 7.11 56.52 0.40 -4.64 16 19 C 0.28 5.31 5.67 -38.69 -0.22 5.09 16 20 O -0.33 -6.55 8.57 -30.65 -0.26 -6.81 16 21 C 0.01 0.13 11.07 101.05 1.12 1.25 16 22 C -0.26 -4.47 5.57 -104.75 -0.58 -5.05 16 23 C 0.57 10.05 6.90 34.32 0.24 10.28 16 24 O -0.45 -9.64 17.95 -19.30 -0.35 -9.98 16 25 O -0.50 -7.13 13.25 -40.72 -0.54 -7.67 16 26 H 0.06 0.43 7.65 -51.93 -0.40 0.03 16 27 H 0.06 0.41 7.67 -51.93 -0.40 0.01 16 28 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.14 1.35 6.28 -52.49 -0.33 1.02 16 30 H 0.15 2.19 7.30 -52.48 -0.38 1.81 16 31 H 0.41 9.17 7.44 -34.47 -0.26 8.91 16 32 H 0.28 6.15 8.31 -40.82 -0.34 5.81 16 33 H 0.10 1.96 4.74 -51.93 -0.25 1.72 16 34 H 0.10 1.61 8.14 -51.93 -0.42 1.19 16 35 H 0.04 0.61 7.82 -51.92 -0.41 0.21 16 36 H 0.42 3.75 8.87 45.56 0.40 4.15 16 LS Contribution 331.54 15.07 5.00 5.00 Total: -1.00 -32.64 331.54 -5.44 -38.08 By element: Atomic # 1 Polarization: 14.77 SS G_CDS: -2.40 Total: 12.37 kcal Atomic # 6 Polarization: -7.20 SS G_CDS: 0.09 Total: -7.11 kcal Atomic # 7 Polarization: -41.18 SS G_CDS: 0.84 Total: -40.34 kcal Atomic # 8 Polarization: -72.99 SS G_CDS: -3.37 Total: -76.36 kcal Atomic # 14 Polarization: 17.62 SS G_CDS: -5.02 Total: 12.59 kcal Atomic # 16 Polarization: 56.34 SS G_CDS: -0.57 Total: 55.76 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -32.64 -5.44 -38.08 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001607286398.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -155.542 kcal (2) G-P(sol) polarization free energy of solvation -32.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -188.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -193.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.52 seconds