Wall clock time and date at job start Tue Mar 31 2020 16:21:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35648 * 116.99998 * 2 1 4 4 C 1.38555 * 120.12471 * 0.25438 * 3 2 1 5 5 C 1.38231 * 120.23930 * 180.25878 * 4 3 2 6 6 C 1.38263 * 120.50208 * 359.76288 * 5 4 3 7 7 S 1.76202 * 119.88072 * 179.97438 * 6 5 4 8 8 O 1.42105 * 106.39812 * 0.19778 * 7 6 5 9 9 O 1.42101 * 106.40321 * 133.11523 * 7 6 5 10 10 N 1.65599 * 107.22141 * 246.65924 * 7 6 5 11 11 C 1.36940 * 120.00227 * 65.25225 * 10 7 6 12 12 H 1.07999 * 119.99928 * 4.84950 * 11 10 7 13 13 C 1.38812 * 120.00040 * 184.85040 * 11 10 7 14 14 N 1.31621 * 120.00052 * 359.97438 * 13 11 10 15 15 Si 1.86791 * 120.00011 * 180.02562 * 13 11 10 16 16 H 1.48503 * 109.47329 * 59.99738 * 15 13 11 17 17 H 1.48501 * 109.47355 * 179.97438 * 15 13 11 18 18 H 1.48505 * 109.47276 * 300.00164 * 15 13 11 19 19 C 1.38518 * 120.24357 * 359.97438 * 6 5 4 20 20 O 1.35649 * 120.12628 * 179.97438 * 19 6 5 21 21 C 1.42900 * 116.99682 * 270.01907 * 20 19 6 22 22 C 1.40294 * 120.12590 * 180.02562 * 3 2 1 23 23 C 1.47090 * 120.24205 * 359.97438 * 22 3 2 24 24 O 1.21546 * 119.99704 * 269.72819 * 23 22 3 25 25 O 1.34785 * 119.99829 * 89.45118 * 23 22 3 26 26 H 1.09001 * 109.47162 * 299.99807 * 1 2 3 27 27 H 1.08998 * 109.47221 * 60.00019 * 1 2 3 28 28 H 1.09001 * 109.47604 * 180.02562 * 1 2 3 29 29 H 1.07998 * 119.88037 * 359.97438 * 4 3 2 30 30 H 1.08003 * 119.74648 * 179.74415 * 5 4 3 31 31 H 0.97005 * 119.99462 * 245.25795 * 10 7 6 32 32 H 0.96991 * 119.99992 * 179.97438 * 14 13 11 33 33 H 1.08995 * 109.47392 * 59.99332 * 21 20 19 34 34 H 1.08997 * 109.47295 * 179.97438 * 21 20 19 35 35 H 1.09009 * 109.46688 * 299.99523 * 21 20 19 36 36 H 0.96700 * 117.00259 * 0.27617 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2086 0.0000 4 6 1.2927 2.3723 0.0053 5 6 1.9178 3.6052 -0.0001 6 6 3.2976 3.6924 -0.0059 7 16 4.0773 5.2725 -0.0134 8 8 3.0323 6.2355 -0.0071 9 8 5.0944 5.2229 0.9778 10 7 4.8504 5.4309 -1.4692 11 6 4.1234 5.4814 -2.6286 12 1 3.0442 5.4969 -2.5891 13 6 4.7735 5.5126 -3.8547 14 7 6.0887 5.4941 -3.9029 15 14 3.7819 5.5822 -5.4361 16 1 2.9453 6.8092 -5.4423 17 1 4.7054 5.6075 -6.5988 18 1 2.9065 4.3859 -5.5246 19 6 4.0694 2.5422 -0.0058 20 8 5.4230 2.6305 -0.0120 21 6 6.0647 2.6694 -1.2883 22 6 3.4456 1.2851 -0.0005 23 6 4.2546 0.0567 -0.0005 24 8 4.5934 -0.4478 1.0521 25 8 4.6155 -0.5125 -1.1678 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 0.2142 2.3159 0.0091 30 1 1.3237 4.5072 0.0000 31 1 5.8182 5.4878 -1.5007 32 1 6.5430 5.5156 -4.7596 33 1 5.7119 3.5368 -1.8461 34 1 7.1436 2.7406 -1.1505 35 1 5.8279 1.7606 -1.8417 36 1 4.3225 -0.0749 -1.9788 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001607286398.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:21:50 Heat of formation + Delta-G solvation = -219.988496 kcal Electronic energy + Delta-G solvation = -27810.257666 eV Core-core repulsion = 23580.372483 eV Total energy + Delta-G solvation = -4229.885183 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 331.070 amu Computer time = 1.52 seconds Orbital eigenvalues (eV) -42.19619 -40.48204 -40.15535 -38.09788 -37.62987 -37.53738 -36.63553 -36.50714 -32.82755 -32.62279 -31.25874 -28.55774 -27.96986 -26.40289 -25.66948 -23.76382 -22.95125 -20.83142 -20.08891 -19.96573 -19.26682 -18.62016 -18.31254 -17.88489 -17.63987 -17.18767 -16.89556 -16.59699 -16.41787 -16.26140 -16.06628 -15.81978 -15.36905 -15.10315 -14.60165 -14.36885 -13.90374 -13.78285 -13.67600 -13.13035 -12.95800 -12.93665 -12.79872 -12.77127 -12.71535 -12.58410 -12.36726 -12.28270 -12.18312 -11.81751 -11.80045 -11.51867 -11.11566 -10.25317 -10.15171 -9.82691 -8.29564 -5.84528 -0.44684 -0.35360 -0.20259 0.89533 1.54298 1.58471 1.63460 1.74644 1.91554 2.11176 2.34022 2.55773 2.69800 2.94342 3.23725 3.25648 3.55565 3.65363 3.90295 4.10343 4.17571 4.27600 4.29488 4.36803 4.43833 4.49436 4.70117 4.80003 4.86860 4.89959 5.13988 5.16864 5.63199 5.95832 6.01789 6.09429 6.55199 6.77205 6.95950 7.35858 8.86478 Molecular weight = 331.07amu Principal moments of inertia in cm(-1) A = 0.011966 B = 0.005485 C = 0.005336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2339.465717 B = 5103.384642 C = 5245.957812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.008 3.992 2 O -0.321 6.321 3 C 0.228 3.772 4 C -0.221 4.221 5 C 0.047 3.953 6 C -0.737 4.737 7 S 2.652 3.348 8 O -0.990 6.990 9 O -1.009 7.009 10 N -0.964 5.964 11 C -0.305 4.305 12 H 0.110 0.890 13 C -0.002 4.002 14 N -0.911 5.911 15 Si 0.976 3.024 16 H -0.273 1.273 17 H -0.286 1.286 18 H -0.258 1.258 19 C 0.263 3.737 20 O -0.353 6.353 21 C 0.003 3.997 22 C -0.272 4.272 23 C 0.576 3.424 24 O -0.500 6.500 25 O -0.497 6.497 26 H 0.077 0.923 27 H 0.085 0.915 28 H 0.127 0.873 29 H 0.191 0.809 30 H 0.169 0.831 31 H 0.409 0.591 32 H 0.275 0.725 33 H 0.087 0.913 34 H 0.112 0.888 35 H 0.068 0.932 36 H 0.438 0.562 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.101 -9.381 -0.982 15.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 O -0.233 6.233 3 C 0.179 3.821 4 C -0.240 4.240 5 C 0.028 3.972 6 C -0.822 4.822 7 S 2.744 3.256 8 O -0.980 6.980 9 O -0.999 6.999 10 N -0.717 5.717 11 C -0.441 4.441 12 H 0.127 0.873 13 C -0.207 4.207 14 N -0.552 5.552 15 Si 0.800 3.200 16 H -0.199 1.199 17 H -0.211 1.211 18 H -0.183 1.183 19 C 0.217 3.783 20 O -0.270 6.270 21 C -0.090 4.090 22 C -0.276 4.276 23 C 0.417 3.583 24 O -0.386 6.386 25 O -0.309 6.309 26 H 0.096 0.904 27 H 0.104 0.896 28 H 0.145 0.855 29 H 0.209 0.791 30 H 0.186 0.814 31 H 0.245 0.755 32 H 0.084 0.916 33 H 0.106 0.894 34 H 0.130 0.870 35 H 0.086 0.914 36 H 0.299 0.701 Dipole moment (debyes) X Y Z Total from point charges -11.583 -9.656 0.677 15.095 hybrid contribution -0.066 -0.017 -1.465 1.467 sum -11.649 -9.673 -0.789 15.162 Atomic orbital electron populations 1.23698 0.74107 1.06813 1.03902 1.86069 1.25545 1.25397 1.86328 1.18828 0.89108 0.86190 0.87983 1.21668 1.02613 0.89898 1.09856 1.21143 0.91027 1.00064 0.84972 1.31608 1.06095 1.22319 1.22182 1.04114 0.72737 0.75450 0.73322 1.93441 1.58398 1.58707 1.87464 1.93456 1.58485 1.88057 1.59902 1.51481 1.17046 1.82225 1.20991 1.19468 0.92207 1.48812 0.83626 0.87265 1.25876 0.96535 0.96863 1.01391 1.69758 1.08150 1.49577 1.27733 0.85240 0.78008 0.79425 0.77341 1.19879 1.21113 1.18281 1.17784 0.83133 0.89520 0.87863 1.85993 1.14839 1.94001 1.32195 1.23848 0.99133 1.04259 0.81754 1.19739 0.93022 0.93507 1.21333 1.19712 0.74869 0.80760 0.83007 1.90833 1.53585 1.64564 1.29644 1.84477 1.72781 1.56023 1.17608 0.90406 0.89644 0.85500 0.79150 0.81392 0.75471 0.91566 0.89423 0.86976 0.91366 0.70087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.08 9.81 113.37 1.11 1.19 16 2 O -0.32 -7.00 9.95 -89.63 -0.89 -7.89 16 3 C 0.23 5.95 6.70 22.85 0.15 6.10 16 4 C -0.22 -4.95 9.02 22.34 0.20 -4.75 16 5 C 0.05 1.37 9.53 22.27 0.21 1.58 16 6 C -0.74 -27.36 5.84 22.34 0.13 -27.23 16 7 S 2.65 115.17 5.31 -56.49 -0.30 114.87 16 8 O -0.99 -44.98 16.61 -128.00 -2.13 -47.11 16 9 O -1.01 -49.34 17.19 -122.31 -2.10 -51.44 16 10 N -0.96 -43.29 3.73 -54.26 -0.20 -43.49 16 11 C -0.30 -13.80 9.26 84.03 0.78 -13.02 16 12 H 0.11 4.67 7.78 -2.91 -0.02 4.65 16 13 C 0.00 -0.11 5.50 84.86 0.47 0.35 16 14 N -0.91 -43.46 13.06 21.65 0.28 -43.18 16 15 Si 0.98 35.85 29.55 68.60 2.03 37.88 16 16 H -0.27 -10.10 7.11 99.48 0.71 -9.39 16 17 H -0.29 -10.58 7.11 99.48 0.71 -9.87 16 18 H -0.26 -8.78 7.11 99.48 0.71 -8.08 16 19 C 0.26 9.86 5.67 22.85 0.13 9.99 16 20 O -0.35 -14.16 8.57 -78.15 -0.67 -14.83 16 21 C 0.00 0.09 11.07 113.37 1.26 1.35 16 22 C -0.27 -8.92 5.57 -19.95 -0.11 -9.03 16 23 C 0.58 19.74 6.90 70.14 0.48 20.22 16 24 O -0.50 -21.10 17.95 19.69 0.35 -20.74 16 25 O -0.50 -13.16 13.25 -56.96 -0.75 -13.92 16 26 H 0.08 0.63 7.65 -2.39 -0.02 0.61 16 27 H 0.09 0.57 7.67 -2.39 -0.02 0.56 16 28 H 0.13 0.81 8.14 -2.39 -0.02 0.79 16 29 H 0.19 2.36 6.28 -2.91 -0.02 2.34 16 30 H 0.17 4.32 7.30 -2.91 -0.02 4.29 16 31 H 0.41 18.97 7.44 -96.74 -0.72 18.25 16 32 H 0.27 12.55 8.31 -92.71 -0.77 11.78 16 33 H 0.09 3.40 4.74 -2.39 -0.01 3.39 16 34 H 0.11 3.58 8.14 -2.39 -0.02 3.56 16 35 H 0.07 1.93 7.82 -2.38 -0.02 1.91 16 36 H 0.44 6.84 8.87 -74.06 -0.66 6.19 16 Total: -1.00 -72.36 331.54 0.23 -72.12 By element: Atomic # 1 Polarization: 31.17 SS G_CDS: -0.19 Total: 30.97 kcal Atomic # 6 Polarization: -18.06 SS G_CDS: 4.81 Total: -13.24 kcal Atomic # 7 Polarization: -86.75 SS G_CDS: 0.08 Total: -86.67 kcal Atomic # 8 Polarization: -149.73 SS G_CDS: -6.19 Total: -155.92 kcal Atomic # 14 Polarization: 35.85 SS G_CDS: 2.03 Total: 37.88 kcal Atomic # 16 Polarization: 115.17 SS G_CDS: -0.30 Total: 114.87 kcal Total: -72.36 0.23 -72.12 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001607286398.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -147.867 kcal (2) G-P(sol) polarization free energy of solvation -72.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -220.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -219.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.52 seconds