Wall clock time and date at job start Tue Mar 31 2020 16:27:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86793 * 119.99951 * 2 1 4 4 H 1.48496 * 109.47448 * 270.00341 * 3 2 1 5 5 H 1.48504 * 109.47264 * 30.00400 * 3 2 1 6 6 H 1.48497 * 109.47315 * 150.00188 * 3 2 1 7 7 C 1.38810 * 120.00116 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00374 * 156.15785 * 7 2 1 9 9 N 1.36945 * 119.99749 * 336.15535 * 7 2 1 10 10 C 1.46494 * 120.00034 * 326.60094 * 9 7 2 11 11 C 1.50700 * 109.46934 * 276.17910 * 10 9 7 12 12 O 1.20829 * 120.00223 * 0.02562 * 11 10 9 13 13 O 1.34230 * 119.99910 * 179.97438 * 11 10 9 14 14 S 1.65605 * 119.99769 * 146.59716 * 9 7 2 15 15 O 1.42095 * 104.27818 * 333.92881 * 14 9 7 16 16 O 1.42096 * 104.27539 * 206.07154 * 14 9 7 17 17 C 1.81404 * 104.44705 * 90.00068 * 14 9 7 18 18 C 1.50694 * 109.46998 * 179.97438 * 17 14 9 19 19 N 1.29949 * 126.29224 * 270.02725 * 18 17 14 20 20 O 1.21297 * 110.25104 * 179.68829 * 19 18 17 21 21 C 1.33641 * 109.81277 * 0.46274 * 20 19 18 22 22 C 1.50699 * 126.55047 * 179.80457 * 21 20 19 23 23 C 1.52998 * 117.49942 * 59.69014 * 22 21 20 24 24 C 1.52998 * 60.03411 * 252.52240 * 23 22 21 25 25 N 1.31133 * 106.89784 * 359.54409 * 21 20 19 26 26 H 0.96999 * 120.00448 * 359.97438 * 1 2 3 27 27 H 1.09001 * 109.47484 * 36.17909 * 10 9 7 28 28 H 1.09004 * 109.47390 * 156.18392 * 10 9 7 29 29 H 0.96706 * 117.00096 * 180.02562 * 13 11 10 30 30 H 1.09005 * 109.47135 * 60.00091 * 17 14 9 31 31 H 1.09004 * 109.46988 * 300.00112 * 17 14 9 32 32 H 1.09000 * 115.56153 * 205.38156 * 22 21 20 33 33 H 1.09003 * 117.50027 * 145.01875 * 23 22 21 34 34 H 1.09000 * 117.49901 * 0.02562 * 23 22 21 35 35 H 1.08998 * 117.50473 * 107.47713 * 24 23 22 36 36 H 1.09003 * 117.49856 * 252.47996 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4477 2.6526 0.7001 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0211 -1.2419 -0.3786 9 7 1.4132 -2.3377 0.4784 10 6 0.4602 -2.2521 1.5877 11 6 1.2106 -2.2386 2.8946 12 8 2.4176 -2.2942 2.8989 13 8 0.5380 -2.1636 4.0538 14 16 1.7684 -3.8076 -0.1965 15 8 2.1664 -3.4965 -1.5247 16 8 0.6146 -4.5974 0.0565 17 6 3.1807 -4.4176 0.7648 18 6 3.6011 -5.7660 0.2394 19 7 3.1582 -6.9200 0.6406 20 8 3.6893 -7.8138 0.0158 21 6 4.5548 -7.2998 -0.8633 22 6 5.4199 -8.0707 -1.8267 23 6 4.7154 -8.9667 -2.8474 24 6 5.4675 -9.5928 -1.6713 25 7 4.5032 -5.9961 -0.7312 26 1 -0.4851 0.8400 0.0004 27 1 -0.1243 -1.3367 1.4949 28 1 -0.2071 -3.1136 1.5608 29 1 1.0627 -2.1576 4.8662 30 1 2.8945 -4.5094 1.8126 31 1 4.0111 -3.7172 0.6750 32 1 6.3335 -7.5682 -2.1441 33 1 5.1655 -9.0535 -3.8363 34 1 3.6261 -8.9982 -2.8223 35 1 4.8732 -10.0360 -0.8723 36 1 6.4124 -10.0919 -1.8866 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608184325.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:27:51 Heat of formation + Delta-G solvation = -42.076780 kcal Electronic energy + Delta-G solvation = -26790.634895 eV Core-core repulsion = 22600.757294 eV Total energy + Delta-G solvation = -4189.877601 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 331.076 amu Computer time = 1.98 seconds Orbital eigenvalues (eV) -45.68984 -39.51670 -37.80042 -36.28419 -36.14906 -35.99878 -35.15499 -34.93453 -32.66208 -31.54641 -29.36875 -27.73421 -25.17776 -24.33527 -23.60539 -22.80001 -21.18362 -20.80534 -18.70810 -18.32615 -17.69199 -17.50960 -17.35404 -16.76409 -16.59091 -15.91610 -15.39306 -15.13370 -15.05048 -14.80400 -14.54670 -13.94315 -13.58591 -13.31149 -12.65956 -12.57411 -12.33672 -12.16132 -11.98877 -11.94362 -11.61740 -11.58541 -11.37431 -11.24719 -11.08274 -11.01883 -11.00689 -10.96726 -10.84443 -10.62868 -10.40939 -10.35591 -9.96953 -9.63486 -9.23418 -7.98167 -6.41499 -4.10253 0.77621 1.11954 2.18580 2.61384 2.91248 3.14566 3.19439 3.24560 3.29487 3.38714 3.52613 3.79286 4.03719 4.28567 4.30111 4.44862 4.48797 4.61259 4.91592 4.94326 5.01768 5.22323 5.30503 5.46359 5.55285 5.60437 5.66617 5.80684 5.94457 5.97354 6.01525 6.58197 6.98788 7.09880 7.51394 8.10221 8.20846 8.57574 8.79471 9.19493 10.62811 Molecular weight = 331.08amu Principal moments of inertia in cm(-1) A = 0.018288 B = 0.003890 C = 0.003548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1530.717400 B = 7196.055673 C = 7889.486102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.862 5.862 2 C 0.038 3.962 3 Si 0.918 3.082 4 H -0.274 1.274 5 H -0.281 1.281 6 H -0.268 1.268 7 C -0.290 4.290 8 H 0.098 0.902 9 N -0.822 5.822 10 C 0.117 3.883 11 C 0.453 3.547 12 O -0.516 6.516 13 O -0.525 6.525 14 S 2.577 3.423 15 O -0.936 6.936 16 O -0.976 6.976 17 C -0.543 4.543 18 C 0.183 3.817 19 N -0.368 5.368 20 O 0.084 5.916 21 C 0.203 3.797 22 C -0.079 4.079 23 C -0.153 4.153 24 C -0.159 4.159 25 N -0.460 5.460 26 H 0.272 0.728 27 H 0.160 0.840 28 H 0.110 0.890 29 H 0.395 0.605 30 H 0.149 0.851 31 H 0.162 0.838 32 H 0.152 0.848 33 H 0.115 0.885 34 H 0.105 0.895 35 H 0.108 0.892 36 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.458 -12.859 1.153 14.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.501 5.501 2 C -0.169 4.169 3 Si 0.744 3.256 4 H -0.199 1.199 5 H -0.207 1.207 6 H -0.192 1.192 7 C -0.423 4.423 8 H 0.116 0.884 9 N -0.652 5.652 10 C -0.013 4.013 11 C 0.293 3.707 12 O -0.404 6.404 13 O -0.335 6.335 14 S 2.670 3.330 15 O -0.925 6.925 16 O -0.965 6.965 17 C -0.666 4.666 18 C -0.090 4.090 19 N -0.074 5.074 20 O 0.022 5.978 21 C -0.017 4.017 22 C -0.099 4.099 23 C -0.191 4.191 24 C -0.197 4.197 25 N -0.193 5.193 26 H 0.082 0.918 27 H 0.176 0.824 28 H 0.128 0.872 29 H 0.252 0.748 30 H 0.167 0.833 31 H 0.180 0.820 32 H 0.170 0.830 33 H 0.134 0.866 34 H 0.123 0.877 35 H 0.126 0.874 36 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 6.522 -12.907 0.623 14.475 hybrid contribution 1.413 0.989 1.263 2.137 sum 7.935 -11.918 1.886 14.442 Atomic orbital electron populations 1.69868 1.06007 1.27868 1.46394 1.25325 0.95241 0.99799 0.96516 0.86067 0.79778 0.80971 0.78781 1.19942 1.20661 1.19248 1.19116 0.97242 0.84731 1.41235 0.88432 1.52410 1.54242 1.19325 1.39230 1.21112 0.92041 1.09394 0.78727 1.25445 0.87842 0.71041 0.86349 1.90607 1.16038 1.46035 1.87687 1.84636 1.45755 1.86027 1.17120 1.06956 0.75408 0.75035 0.75589 1.93525 1.83868 1.82422 1.32727 1.93481 1.44363 1.72429 1.86271 1.29448 1.24786 0.96233 1.16180 1.24678 0.95064 0.95257 0.94043 1.74720 1.18522 0.97697 1.16461 1.85265 1.41610 1.33047 1.37861 1.27747 0.92433 0.88400 0.93098 1.20334 0.99362 0.92042 0.98136 1.23209 1.00834 0.99986 0.95087 1.23198 1.03614 0.91576 1.01262 1.71918 1.18423 1.12360 1.16623 0.91814 0.82367 0.87246 0.74823 0.83288 0.82045 0.83031 0.86623 0.87668 0.87404 0.86823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 48. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -22.30 11.26 55.49 0.63 -21.67 16 2 C 0.04 0.96 4.99 -17.43 -0.09 0.87 16 3 Si 0.92 19.98 29.62 -169.99 -5.03 14.94 16 4 H -0.27 -5.94 7.11 56.52 0.40 -5.53 16 5 H -0.28 -5.99 7.11 56.52 0.40 -5.58 16 6 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 7 C -0.29 -7.49 8.61 -15.06 -0.13 -7.62 16 8 H 0.10 2.47 7.93 -52.49 -0.42 2.05 16 9 N -0.82 -19.98 2.32 -61.09 -0.14 -20.12 16 10 C 0.12 2.59 5.87 -5.20 -0.03 2.55 16 11 C 0.45 9.00 8.36 36.01 0.30 9.30 16 12 O -0.52 -11.01 15.88 -18.75 -0.30 -11.31 16 13 O -0.52 -8.35 13.42 -39.26 -0.53 -8.87 16 14 S 2.58 60.59 5.37 -107.50 -0.58 60.01 16 15 O -0.94 -24.59 17.22 -57.54 -0.99 -25.58 16 16 O -0.98 -23.96 16.52 -57.54 -0.95 -24.91 16 17 C -0.54 -10.82 6.41 36.00 0.23 -10.59 16 18 C 0.18 3.59 7.48 -156.37 -1.17 2.43 16 19 N -0.37 -6.89 12.16 30.90 0.38 -6.51 16 20 O 0.08 1.31 11.08 18.11 0.20 1.51 16 21 C 0.20 2.95 7.97 -13.06 -0.10 2.85 16 22 C -0.08 -0.72 6.33 -91.73 -0.58 -1.30 16 23 C -0.15 -1.07 10.23 -26.73 -0.27 -1.34 16 24 C -0.16 -0.97 10.18 -26.69 -0.27 -1.24 16 25 N -0.46 -8.43 11.55 -9.87 -0.11 -8.54 16 26 H 0.27 6.57 8.31 -40.82 -0.34 6.24 16 27 H 0.16 3.71 5.31 -51.93 -0.28 3.44 16 28 H 0.11 2.26 6.80 -51.93 -0.35 1.91 16 29 H 0.39 4.32 9.10 45.56 0.41 4.74 16 30 H 0.15 2.78 7.36 -51.92 -0.38 2.40 16 31 H 0.16 3.03 8.14 -51.92 -0.42 2.61 16 32 H 0.15 1.14 8.14 -51.93 -0.42 0.71 16 33 H 0.12 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.11 0.68 8.01 -51.93 -0.42 0.26 16 36 H 0.11 0.43 8.14 -51.93 -0.42 0.01 16 LS Contribution 337.69 15.07 5.09 5.09 Total: -1.00 -34.56 337.69 -7.13 -41.69 By element: Atomic # 1 Polarization: 11.06 SS G_CDS: -2.68 Total: 8.38 kcal Atomic # 6 Polarization: -1.99 SS G_CDS: -2.11 Total: -4.10 kcal Atomic # 7 Polarization: -57.60 SS G_CDS: 0.75 Total: -56.85 kcal Atomic # 8 Polarization: -66.60 SS G_CDS: -2.57 Total: -69.17 kcal Atomic # 14 Polarization: 19.98 SS G_CDS: -5.03 Total: 14.94 kcal Atomic # 16 Polarization: 60.59 SS G_CDS: -0.58 Total: 60.01 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -34.56 -7.13 -41.69 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608184325.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.383 kcal (2) G-P(sol) polarization free energy of solvation -34.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.98 seconds