Wall clock time and date at job start Tue Mar 31 2020 16:27:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86793 * 119.99951 * 2 1 4 4 H 1.48496 * 109.47448 * 270.00341 * 3 2 1 5 5 H 1.48504 * 109.47264 * 30.00400 * 3 2 1 6 6 H 1.48497 * 109.47315 * 150.00188 * 3 2 1 7 7 C 1.38810 * 120.00116 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00374 * 156.15785 * 7 2 1 9 9 N 1.36945 * 119.99749 * 336.15535 * 7 2 1 10 10 C 1.46494 * 120.00034 * 326.60094 * 9 7 2 11 11 C 1.50700 * 109.46934 * 276.17910 * 10 9 7 12 12 O 1.20829 * 120.00223 * 0.02562 * 11 10 9 13 13 O 1.34230 * 119.99910 * 179.97438 * 11 10 9 14 14 S 1.65605 * 119.99769 * 146.59716 * 9 7 2 15 15 O 1.42095 * 104.27818 * 333.92881 * 14 9 7 16 16 O 1.42096 * 104.27539 * 206.07154 * 14 9 7 17 17 C 1.81404 * 104.44705 * 90.00068 * 14 9 7 18 18 C 1.50694 * 109.46998 * 179.97438 * 17 14 9 19 19 N 1.29949 * 126.29224 * 270.02725 * 18 17 14 20 20 O 1.21297 * 110.25104 * 179.68829 * 19 18 17 21 21 C 1.33641 * 109.81277 * 0.46274 * 20 19 18 22 22 C 1.50699 * 126.55047 * 179.80457 * 21 20 19 23 23 C 1.52998 * 117.49942 * 59.69014 * 22 21 20 24 24 C 1.52998 * 60.03411 * 252.52240 * 23 22 21 25 25 N 1.31133 * 106.89784 * 359.54409 * 21 20 19 26 26 H 0.96999 * 120.00448 * 359.97438 * 1 2 3 27 27 H 1.09001 * 109.47484 * 36.17909 * 10 9 7 28 28 H 1.09004 * 109.47390 * 156.18392 * 10 9 7 29 29 H 0.96706 * 117.00096 * 180.02562 * 13 11 10 30 30 H 1.09005 * 109.47135 * 60.00091 * 17 14 9 31 31 H 1.09004 * 109.46988 * 300.00112 * 17 14 9 32 32 H 1.09000 * 115.56153 * 205.38156 * 22 21 20 33 33 H 1.09003 * 117.50027 * 145.01875 * 23 22 21 34 34 H 1.09000 * 117.49901 * 0.02562 * 23 22 21 35 35 H 1.08998 * 117.50473 * 107.47713 * 24 23 22 36 36 H 1.09003 * 117.49856 * 252.47996 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4477 2.6526 0.7001 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0211 -1.2419 -0.3786 9 7 1.4132 -2.3377 0.4784 10 6 0.4602 -2.2521 1.5877 11 6 1.2106 -2.2386 2.8946 12 8 2.4176 -2.2942 2.8989 13 8 0.5380 -2.1636 4.0538 14 16 1.7684 -3.8076 -0.1965 15 8 2.1664 -3.4965 -1.5247 16 8 0.6146 -4.5974 0.0565 17 6 3.1807 -4.4176 0.7648 18 6 3.6011 -5.7660 0.2394 19 7 3.1582 -6.9200 0.6406 20 8 3.6893 -7.8138 0.0158 21 6 4.5548 -7.2998 -0.8633 22 6 5.4199 -8.0707 -1.8267 23 6 4.7154 -8.9667 -2.8474 24 6 5.4675 -9.5928 -1.6713 25 7 4.5032 -5.9961 -0.7312 26 1 -0.4851 0.8400 0.0004 27 1 -0.1243 -1.3367 1.4949 28 1 -0.2071 -3.1136 1.5608 29 1 1.0627 -2.1576 4.8662 30 1 2.8945 -4.5094 1.8126 31 1 4.0111 -3.7172 0.6750 32 1 6.3335 -7.5682 -2.1441 33 1 5.1655 -9.0535 -3.8363 34 1 3.6261 -8.9982 -2.8223 35 1 4.8732 -10.0360 -0.8723 36 1 6.4124 -10.0919 -1.8866 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001608184325.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:27:49 Heat of formation + Delta-G solvation = -70.208629 kcal Electronic energy + Delta-G solvation = -26791.854784 eV Core-core repulsion = 22600.757294 eV Total energy + Delta-G solvation = -4191.097489 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 331.076 amu Computer time = 2.23 seconds Orbital eigenvalues (eV) -47.03758 -41.07049 -38.46698 -38.19534 -37.69237 -37.50692 -36.99545 -36.63332 -33.97531 -33.45293 -30.89807 -29.50084 -26.22524 -26.20170 -24.92381 -23.31115 -22.73221 -21.97643 -20.53737 -19.76676 -19.20036 -19.05620 -18.90920 -18.47143 -17.66920 -17.47993 -17.03626 -16.87547 -16.48276 -16.41149 -15.84628 -15.33567 -15.25212 -14.60371 -14.24563 -13.91961 -13.72737 -13.54432 -13.39556 -13.37105 -13.28755 -13.18830 -12.87810 -12.80824 -12.65575 -12.58841 -12.43093 -12.42236 -12.30245 -12.08350 -11.86704 -11.56519 -11.54984 -11.11124 -10.79960 -9.85327 -8.31877 -6.06399 -0.97452 -0.14804 0.80246 1.32521 1.43977 1.47604 1.51687 1.57446 1.68386 2.03731 2.35252 2.45302 2.54122 2.74555 2.83435 3.08528 3.15450 3.47360 3.64165 3.79712 3.91214 4.02415 4.21505 4.26162 4.40671 4.42828 4.65626 4.77873 4.84998 4.91650 5.06728 5.21115 5.21216 5.62416 5.68956 6.31266 6.80240 6.87231 7.14315 7.27025 8.72689 Molecular weight = 331.08amu Principal moments of inertia in cm(-1) A = 0.018288 B = 0.003890 C = 0.003548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1530.717400 B = 7196.055673 C = 7889.486102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C -0.001 4.001 3 Si 0.976 3.024 4 H -0.273 1.273 5 H -0.272 1.272 6 H -0.266 1.266 7 C -0.311 4.311 8 H 0.094 0.906 9 N -0.833 5.833 10 C 0.110 3.890 11 C 0.463 3.537 12 O -0.532 6.532 13 O -0.511 6.511 14 S 2.576 3.424 15 O -0.975 6.975 16 O -0.997 6.997 17 C -0.519 4.519 18 C 0.155 3.845 19 N -0.382 5.382 20 O 0.096 5.904 21 C 0.221 3.779 22 C -0.108 4.108 23 C -0.148 4.148 24 C -0.133 4.133 25 N -0.496 5.496 26 H 0.276 0.724 27 H 0.147 0.853 28 H 0.116 0.884 29 H 0.422 0.578 30 H 0.161 0.839 31 H 0.170 0.830 32 H 0.170 0.830 33 H 0.142 0.858 34 H 0.093 0.907 35 H 0.106 0.894 36 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.992 -13.943 1.564 16.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.205 4.205 3 Si 0.799 3.201 4 H -0.198 1.198 5 H -0.196 1.196 6 H -0.190 1.190 7 C -0.445 4.445 8 H 0.111 0.889 9 N -0.663 5.663 10 C -0.019 4.019 11 C 0.304 3.696 12 O -0.421 6.421 13 O -0.324 6.324 14 S 2.674 3.326 15 O -0.965 6.965 16 O -0.986 6.986 17 C -0.647 4.647 18 C -0.117 4.117 19 N -0.088 5.088 20 O 0.032 5.968 21 C 0.002 3.998 22 C -0.128 4.128 23 C -0.186 4.186 24 C -0.170 4.170 25 N -0.228 5.228 26 H 0.086 0.914 27 H 0.164 0.836 28 H 0.134 0.866 29 H 0.283 0.717 30 H 0.179 0.821 31 H 0.188 0.812 32 H 0.187 0.813 33 H 0.160 0.840 34 H 0.111 0.889 35 H 0.124 0.876 36 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 8.008 -13.970 1.047 16.136 hybrid contribution 0.943 1.144 1.150 1.876 sum 8.951 -12.826 2.198 15.794 Atomic orbital electron populations 1.69942 1.07006 1.28816 1.46822 1.26092 0.95999 1.02354 0.96034 0.85208 0.78708 0.77464 0.78744 1.19802 1.19639 1.19034 1.19317 0.97384 0.85621 1.42151 0.88873 1.52377 1.54748 1.19037 1.40133 1.21056 0.91989 1.09076 0.79796 1.24702 0.87185 0.70921 0.86791 1.90602 1.16508 1.46870 1.88142 1.84534 1.45491 1.85148 1.17224 1.06677 0.75832 0.74808 0.75247 1.93465 1.84574 1.83008 1.35428 1.93438 1.46033 1.72678 1.86469 1.29034 1.22844 0.97019 1.15778 1.24657 0.96474 0.95241 0.95368 1.74678 1.19080 0.97784 1.17301 1.85222 1.41662 1.32055 1.37827 1.28801 0.91048 0.87808 0.92124 1.20835 0.99593 0.93689 0.98646 1.23392 1.00434 0.98378 0.96421 1.23396 1.04735 0.88658 1.00247 1.71896 1.19295 1.14437 1.17208 0.91374 0.83635 0.86607 0.71707 0.82082 0.81193 0.81295 0.83994 0.88881 0.87581 0.83587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 54. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -46.31 11.26 21.65 0.24 -46.07 16 2 C 0.00 -0.03 4.99 84.86 0.42 0.40 16 3 Si 0.98 40.80 29.62 68.60 2.03 42.83 16 4 H -0.27 -11.26 7.11 99.48 0.71 -10.56 16 5 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 6 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 7 C -0.31 -16.37 8.61 84.03 0.72 -15.65 16 8 H 0.09 4.84 7.93 -2.91 -0.02 4.82 16 9 N -0.83 -41.33 2.32 -347.18 -0.80 -42.13 16 10 C 0.11 4.92 5.87 85.63 0.50 5.42 16 11 C 0.46 18.05 8.36 71.24 0.60 18.64 16 12 O -0.53 -22.27 15.88 21.95 0.35 -21.92 16 13 O -0.51 -15.24 13.42 -51.42 -0.69 -15.93 16 14 S 2.58 124.61 5.37 -56.49 -0.30 124.30 16 15 O -0.97 -53.20 17.22 -127.65 -2.20 -55.40 16 16 O -1.00 -50.31 16.52 -127.65 -2.11 -52.42 16 17 C -0.52 -20.96 6.41 71.23 0.46 -20.50 16 18 C 0.16 6.16 7.48 138.46 1.04 7.20 16 19 N -0.38 -14.30 12.16 -60.33 -0.73 -15.04 16 20 O 0.10 2.94 11.08 74.86 0.83 3.77 16 21 C 0.22 6.22 7.97 88.38 0.70 6.92 16 22 C -0.11 -1.72 6.33 -11.52 -0.07 -1.79 16 23 C -0.15 -1.66 10.23 30.59 0.31 -1.35 16 24 C -0.13 -1.16 10.18 30.62 0.31 -0.84 16 25 N -0.50 -18.18 11.55 -303.20 -3.50 -21.68 16 26 H 0.28 13.43 8.31 -92.71 -0.77 12.66 16 27 H 0.15 6.95 5.31 -2.39 -0.01 6.94 16 28 H 0.12 4.89 6.80 -2.38 -0.02 4.87 16 29 H 0.42 8.03 9.10 -74.05 -0.67 7.35 16 30 H 0.16 6.02 7.36 -2.39 -0.02 6.00 16 31 H 0.17 6.49 8.14 -2.39 -0.02 6.47 16 32 H 0.17 2.11 8.14 -2.39 -0.02 2.09 16 33 H 0.14 0.86 8.14 -2.39 -0.02 0.85 16 34 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 35 H 0.11 1.01 8.01 -2.39 -0.02 0.99 16 36 H 0.15 0.39 8.14 -2.39 -0.02 0.37 16 Total: -1.00 -76.06 337.69 -1.41 -77.46 By element: Atomic # 1 Polarization: 23.28 SS G_CDS: 0.49 Total: 23.77 kcal Atomic # 6 Polarization: -6.55 SS G_CDS: 4.99 Total: -1.56 kcal Atomic # 7 Polarization: -120.12 SS G_CDS: -4.80 Total: -124.92 kcal Atomic # 8 Polarization: -138.07 SS G_CDS: -3.82 Total: -141.89 kcal Atomic # 14 Polarization: 40.80 SS G_CDS: 2.03 Total: 42.83 kcal Atomic # 16 Polarization: 124.61 SS G_CDS: -0.30 Total: 124.30 kcal Total: -76.06 -1.41 -77.46 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608184325.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.254 kcal (2) G-P(sol) polarization free energy of solvation -76.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.23 seconds