Wall clock time and date at job start Tue Mar 31 2020 17:08:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17393 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46504 * 109.47257 * 23.20963 * 3 2 1 5 5 C 1.36882 * 119.99671 * 275.01083 * 4 3 2 6 6 H 1.07997 * 119.99686 * 188.14120 * 5 4 3 7 7 C 1.39035 * 120.00239 * 8.15006 * 5 4 3 8 8 N 1.31368 * 120.00266 * 14.73148 * 7 5 4 9 9 Si 1.86797 * 120.00141 * 194.73862 * 7 5 4 10 10 H 1.48504 * 109.47098 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47510 * 119.99534 * 9 7 5 12 12 H 1.48499 * 109.47316 * 240.00008 * 9 7 5 13 13 C 1.34772 * 119.99726 * 95.01216 * 4 3 2 14 14 O 1.21600 * 119.99930 * 184.97647 * 13 4 3 15 15 C 1.47683 * 120.00314 * 4.98604 * 13 4 3 16 16 C 1.39764 * 120.07753 * 310.31209 * 15 13 4 17 17 C 1.37923 * 120.09965 * 180.02562 * 16 15 13 18 18 C 1.38351 * 120.26222 * 359.97438 * 17 16 15 19 19 Cl 1.73595 * 119.92163 * 179.97438 * 18 17 16 20 20 C 1.39540 * 120.15722 * 0.25849 * 18 17 16 21 21 C 1.48473 * 120.04948 * 179.74449 * 20 18 17 22 22 N 1.34045 * 126.67494 * 179.68577 * 21 20 18 23 23 N 1.28980 * 107.26969 * 179.89019 * 22 21 20 24 24 N 1.28732 * 108.94453 * 0.37612 * 23 22 21 25 25 H 0.96996 * 125.34837 * 179.78665 * 24 23 22 26 26 N 1.28879 * 109.31545 * 359.75813 * 24 23 22 27 27 C 1.38992 * 119.90169 * 359.50585 * 20 18 17 28 28 H 4.40643 * 5.51421 * 180.02562 * 4 1 2 29 29 H 1.09001 * 109.47104 * 263.20894 * 3 2 1 30 30 H 1.09000 * 109.47082 * 143.21241 * 3 2 1 31 31 H 0.97001 * 120.00313 * 180.02562 * 8 7 5 32 32 H 1.08001 * 119.94973 * 359.97438 * 16 15 13 33 33 H 1.07991 * 119.87094 * 179.97438 * 17 16 15 34 34 H 1.07996 * 120.13202 * 180.25653 * 27 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1349 -1.2686 -0.5443 5 6 3.2659 -2.3586 0.2732 6 1 3.7476 -3.2533 -0.0929 7 6 2.7787 -2.3142 1.5746 8 7 1.9489 -1.3610 1.9331 9 14 3.3041 -3.6098 2.8134 10 1 4.2368 -4.5659 2.1643 11 1 3.9852 -2.9530 3.9579 12 1 2.1078 -4.3410 3.3026 13 6 3.4557 -1.3628 -1.8499 14 8 3.7748 -2.4373 -2.3216 15 6 3.4200 -0.1612 -2.7078 16 6 2.2944 0.6673 -2.7062 17 6 2.2603 1.7893 -3.5076 18 6 3.3385 2.1016 -4.3163 19 17 3.2859 3.5156 -5.3219 20 6 4.4659 1.2793 -4.3299 21 6 5.6194 1.6136 -5.2029 22 7 6.7640 0.9252 -5.3158 23 7 7.4998 1.5440 -6.1755 24 7 6.8687 2.5854 -6.5931 25 1 7.2051 3.2226 -7.2424 26 7 5.7193 2.6482 -6.0136 27 6 4.5094 0.1496 -3.5214 28 1 -1.0498 -0.0003 -0.0003 29 1 3.0092 0.1223 1.0205 30 1 3.0089 0.8238 -0.6154 31 1 1.6093 -1.3297 2.8412 32 1 1.4496 0.4281 -2.0772 33 1 1.3885 2.4267 -3.5038 34 1 5.3817 -0.4870 -3.5259 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001609020921.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:08:16 Heat of formation + Delta-G solvation = 197.811237 kcal Electronic energy + Delta-G solvation = -24827.194280 eV Core-core repulsion = 20985.276969 eV Total energy + Delta-G solvation = -3841.917311 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 331.058 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -44.46231 -39.81857 -38.03962 -36.30138 -35.36000 -34.44497 -33.64060 -32.20827 -31.44336 -30.80185 -30.33054 -26.61417 -25.28415 -24.67629 -24.47847 -22.69081 -21.87001 -19.64154 -19.17255 -18.05524 -17.16472 -17.09605 -16.66964 -16.39181 -15.61016 -15.06824 -14.61487 -14.26025 -14.16919 -13.86805 -13.60051 -13.50746 -13.11198 -12.75718 -12.41268 -12.23540 -11.82023 -11.65635 -11.53916 -11.45647 -11.27107 -11.20546 -11.08666 -10.86956 -10.54139 -10.48603 -10.37340 -9.52612 -9.39373 -8.92237 -8.80535 -8.69940 -8.37653 -8.08907 -6.42932 -3.95707 0.62764 1.09981 1.23751 2.09971 2.20989 2.31161 3.06360 3.19824 3.26364 3.42930 3.58668 3.74791 3.89638 4.03463 4.10862 4.15207 4.73918 4.88808 4.98565 5.07033 5.34504 5.38483 5.42380 5.47569 5.56577 5.68954 5.97337 6.14144 6.23259 6.27441 6.32590 6.58022 6.75653 6.81572 7.01348 7.42350 7.85466 8.12118 8.28470 8.76353 8.98177 9.18944 9.73082 10.51065 Molecular weight = 331.06amu Principal moments of inertia in cm(-1) A = 0.018198 B = 0.003552 C = 0.003090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1538.254039 B = 7880.191648 C = 9058.230763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.267 4.267 2 C -0.098 4.098 3 C 0.222 3.778 4 N -0.424 5.424 5 C -0.304 4.304 6 H 0.111 0.889 7 C 0.030 3.970 8 N -0.863 5.863 9 Si 0.931 3.069 10 H -0.266 1.266 11 H -0.279 1.279 12 H -0.281 1.281 13 C 0.473 3.527 14 O -0.576 6.576 15 C -0.087 4.087 16 C -0.070 4.070 17 C -0.117 4.117 18 C -0.004 4.004 19 Cl -0.050 7.050 20 C -0.022 4.022 21 C 0.221 3.779 22 N -0.260 5.260 23 N -0.054 5.054 24 N -0.234 5.234 25 H 0.473 0.527 26 N -0.276 5.276 27 C -0.028 4.028 28 H 0.199 0.801 29 H 0.120 0.880 30 H 0.064 0.936 31 H 0.271 0.729 32 H 0.151 0.849 33 H 0.142 0.858 34 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.656 12.709 -10.610 16.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.286 4.286 2 C -0.100 4.100 3 C 0.100 3.900 4 N -0.140 5.140 5 C -0.431 4.431 6 H 0.129 0.871 7 C -0.174 4.174 8 N -0.502 5.502 9 Si 0.757 3.243 10 H -0.190 1.190 11 H -0.204 1.204 12 H -0.207 1.207 13 C 0.262 3.738 14 O -0.461 6.461 15 C -0.091 4.091 16 C -0.090 4.090 17 C -0.135 4.135 18 C -0.033 4.033 19 Cl -0.021 7.021 20 C -0.026 4.026 21 C -0.058 4.058 22 N -0.134 5.134 23 N -0.049 5.049 24 N -0.079 5.079 25 H 0.326 0.674 26 N -0.127 5.127 27 C -0.049 4.049 28 H 0.216 0.784 29 H 0.138 0.862 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.168 0.832 33 H 0.160 0.840 34 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 3.364 12.229 -10.961 16.764 hybrid contribution -0.471 0.112 0.453 0.663 sum 2.894 12.341 -10.508 16.465 Atomic orbital electron populations 1.24254 0.95341 1.03095 1.05954 1.22875 0.94069 0.97557 0.95478 1.18669 0.84576 0.85240 1.01558 1.43701 1.53714 1.10213 1.06353 1.19893 1.36090 0.94812 0.92316 0.87084 1.25359 0.95120 0.98526 0.98428 1.69989 1.27660 1.32990 1.19514 0.85774 0.78661 0.80103 0.79729 1.19024 1.20442 1.20713 1.17663 0.86658 0.87595 0.81898 1.90663 1.54353 1.28293 1.72742 1.20304 0.94203 0.96306 0.98258 1.21971 0.98432 0.92178 0.96414 1.20893 0.97601 0.98537 0.96508 1.20959 0.95234 0.90470 0.96656 1.98369 1.98106 1.38260 1.67326 1.16910 0.89467 0.97419 0.98803 1.23475 0.94992 0.89791 0.97561 1.76142 1.01972 1.23198 1.12039 1.78899 1.21113 0.96644 1.08256 1.47865 1.09365 1.19814 1.30899 0.67351 1.75375 1.03206 1.22814 1.11334 1.21197 0.98618 0.93478 0.91600 0.78376 0.86235 0.91781 0.91786 0.83210 0.84031 0.83260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.27 -5.15 19.05 29.55 0.56 -4.59 16 2 C -0.10 -2.05 8.70 -37.12 -0.32 -2.37 16 3 C 0.22 4.70 4.76 -6.83 -0.03 4.67 16 4 N -0.42 -10.25 2.59 -119.07 -0.31 -10.56 16 5 C -0.30 -7.97 9.46 -15.00 -0.14 -8.11 16 6 H 0.11 3.08 7.26 -52.49 -0.38 2.70 16 7 C 0.03 0.73 5.17 -17.45 -0.09 0.64 16 8 N -0.86 -21.06 8.38 55.50 0.46 -20.59 16 9 Si 0.93 19.67 29.58 -169.99 -5.03 14.65 16 10 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 11 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 12 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 13 C 0.47 11.22 7.17 -12.40 -0.09 11.14 16 14 O -0.58 -15.68 16.65 5.28 0.09 -15.60 16 15 C -0.09 -1.65 4.89 -105.01 -0.51 -2.16 16 16 C -0.07 -1.15 7.55 -39.13 -0.30 -1.45 16 17 C -0.12 -1.59 9.80 -39.66 -0.39 -1.98 16 18 C 0.00 -0.05 6.35 -39.05 -0.25 -0.30 16 19 Cl -0.05 -0.61 26.18 -51.86 -1.36 -1.97 16 20 C -0.02 -0.34 5.87 -104.91 -0.62 -0.95 16 21 C 0.22 3.27 7.86 -156.30 -1.23 2.04 16 22 N -0.26 -3.97 12.23 32.16 0.39 -3.58 16 23 N -0.05 -0.67 13.47 60.35 0.81 0.14 16 24 N -0.23 -2.20 7.90 60.35 0.48 -1.73 16 25 H 0.47 1.99 8.96 -340.37 -3.05 -1.06 16 26 N -0.28 -3.39 9.74 32.17 0.31 -3.07 16 27 C -0.03 -0.48 9.38 -38.84 -0.36 -0.84 16 28 H 0.20 3.10 7.80 -54.10 -0.42 2.68 16 29 H 0.12 2.68 6.29 -51.93 -0.33 2.35 16 30 H 0.06 1.17 5.52 -51.93 -0.29 0.89 16 31 H 0.27 6.34 8.31 -40.82 -0.34 6.00 16 32 H 0.15 2.55 4.70 -52.49 -0.25 2.31 16 33 H 0.14 1.55 8.06 -52.49 -0.42 1.12 16 34 H 0.15 2.67 7.88 -52.49 -0.41 2.26 16 LS Contribution 318.82 15.07 4.80 4.80 Total: -1.00 -31.00 318.82 -7.79 -38.79 By element: Atomic # 1 Polarization: 7.69 SS G_CDS: -4.68 Total: 3.01 kcal Atomic # 6 Polarization: -0.52 SS G_CDS: -3.77 Total: -4.29 kcal Atomic # 7 Polarization: -41.55 SS G_CDS: 2.15 Total: -39.40 kcal Atomic # 8 Polarization: -15.68 SS G_CDS: 0.09 Total: -15.60 kcal Atomic # 14 Polarization: 19.67 SS G_CDS: -5.03 Total: 14.65 kcal Atomic # 17 Polarization: -0.61 SS G_CDS: -1.36 Total: -1.97 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -31.00 -7.79 -38.79 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609020921.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 236.601 kcal (2) G-P(sol) polarization free energy of solvation -30.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 205.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.790 kcal (6) G-S(sol) free energy of system = (1) + (5) 197.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds