Wall clock time and date at job start Tue Mar 31 2020 17:08:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17393 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46504 * 109.47257 * 23.20963 * 3 2 1 5 5 C 1.36882 * 119.99671 * 275.01083 * 4 3 2 6 6 H 1.07997 * 119.99686 * 188.14120 * 5 4 3 7 7 C 1.39035 * 120.00239 * 8.15006 * 5 4 3 8 8 N 1.31368 * 120.00266 * 14.73148 * 7 5 4 9 9 Si 1.86797 * 120.00141 * 194.73862 * 7 5 4 10 10 H 1.48504 * 109.47098 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47510 * 119.99534 * 9 7 5 12 12 H 1.48499 * 109.47316 * 240.00008 * 9 7 5 13 13 C 1.34772 * 119.99726 * 95.01216 * 4 3 2 14 14 O 1.21600 * 119.99930 * 184.97647 * 13 4 3 15 15 C 1.47683 * 120.00314 * 4.98604 * 13 4 3 16 16 C 1.39764 * 120.07753 * 310.31209 * 15 13 4 17 17 C 1.37923 * 120.09965 * 180.02562 * 16 15 13 18 18 C 1.38351 * 120.26222 * 359.97438 * 17 16 15 19 19 Cl 1.73595 * 119.92163 * 179.97438 * 18 17 16 20 20 C 1.39540 * 120.15722 * 0.25849 * 18 17 16 21 21 C 1.48473 * 120.04948 * 179.74449 * 20 18 17 22 22 N 1.34045 * 126.67494 * 179.68577 * 21 20 18 23 23 N 1.28980 * 107.26969 * 179.89019 * 22 21 20 24 24 N 1.28732 * 108.94453 * 0.37612 * 23 22 21 25 25 H 0.96996 * 125.34837 * 179.78665 * 24 23 22 26 26 N 1.28879 * 109.31545 * 359.75813 * 24 23 22 27 27 C 1.38992 * 119.90169 * 359.50585 * 20 18 17 28 28 H 4.40643 * 5.51421 * 180.02562 * 4 1 2 29 29 H 1.09001 * 109.47104 * 263.20894 * 3 2 1 30 30 H 1.09000 * 109.47082 * 143.21241 * 3 2 1 31 31 H 0.97001 * 120.00313 * 180.02562 * 8 7 5 32 32 H 1.08001 * 119.94973 * 359.97438 * 16 15 13 33 33 H 1.07991 * 119.87094 * 179.97438 * 17 16 15 34 34 H 1.07996 * 120.13202 * 180.25653 * 27 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1349 -1.2686 -0.5443 5 6 3.2659 -2.3586 0.2732 6 1 3.7476 -3.2533 -0.0929 7 6 2.7787 -2.3142 1.5746 8 7 1.9489 -1.3610 1.9331 9 14 3.3041 -3.6098 2.8134 10 1 4.2368 -4.5659 2.1643 11 1 3.9852 -2.9530 3.9579 12 1 2.1078 -4.3410 3.3026 13 6 3.4557 -1.3628 -1.8499 14 8 3.7748 -2.4373 -2.3216 15 6 3.4200 -0.1612 -2.7078 16 6 2.2944 0.6673 -2.7062 17 6 2.2603 1.7893 -3.5076 18 6 3.3385 2.1016 -4.3163 19 17 3.2859 3.5156 -5.3219 20 6 4.4659 1.2793 -4.3299 21 6 5.6194 1.6136 -5.2029 22 7 6.7640 0.9252 -5.3158 23 7 7.4998 1.5440 -6.1755 24 7 6.8687 2.5854 -6.5931 25 1 7.2051 3.2226 -7.2424 26 7 5.7193 2.6482 -6.0136 27 6 4.5094 0.1496 -3.5214 28 1 -1.0498 -0.0003 -0.0003 29 1 3.0092 0.1223 1.0205 30 1 3.0089 0.8238 -0.6154 31 1 1.6093 -1.3297 2.8412 32 1 1.4496 0.4281 -2.0772 33 1 1.3885 2.4267 -3.5038 34 1 5.3817 -0.4870 -3.5259 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001609020921.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:08:16 Heat of formation + Delta-G solvation = 178.527409 kcal Electronic energy + Delta-G solvation = -24828.030489 eV Core-core repulsion = 20985.276969 eV Total energy + Delta-G solvation = -3842.753521 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 331.058 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -45.47587 -41.33242 -39.55792 -37.43930 -37.20268 -35.50531 -34.76913 -33.91363 -33.15011 -32.08396 -31.62753 -28.33202 -26.94557 -25.83188 -25.63734 -24.13418 -23.05687 -21.14981 -20.22668 -19.78768 -18.55950 -18.23756 -18.15993 -17.90642 -17.00852 -16.63243 -16.18852 -15.94068 -15.50350 -15.21942 -14.85314 -14.75140 -14.66586 -14.32933 -14.03831 -13.46056 -13.38363 -13.24719 -12.79558 -12.67055 -12.61617 -12.50287 -12.36142 -12.29560 -12.14058 -11.94891 -11.56195 -11.31967 -11.01300 -10.62157 -10.46123 -10.04530 -9.92713 -9.69590 -8.30275 -5.93214 -0.56653 -0.11553 0.15695 0.97998 1.13419 1.36987 1.41522 1.44668 1.56997 1.84873 2.08463 2.34056 2.42487 2.50572 2.56153 2.95578 3.08434 3.20011 3.69285 3.81606 3.91730 4.01713 4.13182 4.20152 4.32113 4.48515 4.63812 4.76149 4.91987 4.97421 5.09881 5.26481 5.44136 5.46410 5.51009 5.63197 5.97020 6.39752 7.07617 7.09625 7.20177 7.33300 7.88081 8.60800 Molecular weight = 331.06amu Principal moments of inertia in cm(-1) A = 0.018198 B = 0.003552 C = 0.003090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1538.254039 B = 7880.191648 C = 9058.230763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.137 4.137 3 C 0.228 3.772 4 N -0.433 5.433 5 C -0.347 4.347 6 H 0.080 0.920 7 C 0.006 3.994 8 N -0.865 5.865 9 Si 0.990 3.010 10 H -0.277 1.277 11 H -0.265 1.265 12 H -0.276 1.276 13 C 0.465 3.535 14 O -0.627 6.627 15 C -0.106 4.106 16 C -0.068 4.068 17 C -0.097 4.097 18 C 0.005 3.995 19 Cl -0.023 7.023 20 C -0.019 4.019 21 C 0.204 3.796 22 N -0.294 5.294 23 N -0.055 5.055 24 N -0.199 5.199 25 H 0.495 0.505 26 N -0.266 5.266 27 C -0.034 4.034 28 H 0.234 0.766 29 H 0.102 0.898 30 H 0.089 0.911 31 H 0.276 0.724 32 H 0.146 0.854 33 H 0.180 0.820 34 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.548 15.482 -11.354 19.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.265 4.265 2 C -0.139 4.139 3 C 0.107 3.893 4 N -0.148 5.148 5 C -0.474 4.474 6 H 0.098 0.902 7 C -0.197 4.197 8 N -0.502 5.502 9 Si 0.813 3.187 10 H -0.202 1.202 11 H -0.189 1.189 12 H -0.202 1.202 13 C 0.255 3.745 14 O -0.516 6.516 15 C -0.110 4.110 16 C -0.087 4.087 17 C -0.115 4.115 18 C -0.025 4.025 19 Cl 0.007 6.993 20 C -0.023 4.023 21 C -0.075 4.075 22 N -0.166 5.166 23 N -0.050 5.050 24 N -0.050 5.050 25 H 0.354 0.646 26 N -0.119 5.119 27 C -0.055 4.055 28 H 0.250 0.750 29 H 0.120 0.880 30 H 0.107 0.893 31 H 0.086 0.914 32 H 0.163 0.837 33 H 0.197 0.803 34 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 2.256 15.062 -11.709 19.211 hybrid contribution -0.116 -0.575 0.519 0.784 sum 2.139 14.487 -11.189 18.429 Atomic orbital electron populations 1.25085 0.96195 1.01143 1.04070 1.22982 0.94447 0.99305 0.97195 1.18613 0.85315 0.84594 1.00826 1.43859 1.53722 1.10743 1.06458 1.19748 1.38462 0.95289 0.93894 0.90186 1.25974 0.94559 1.00283 0.98914 1.70094 1.26978 1.33270 1.19880 0.84928 0.78153 0.77858 0.77714 1.20178 1.18941 1.20160 1.18401 0.85323 0.88567 0.82160 1.90599 1.56362 1.30779 1.73857 1.19896 0.96290 0.95792 0.99013 1.21872 0.97159 0.92634 0.97047 1.21170 0.98403 0.97375 0.94536 1.21076 0.94467 0.90704 0.96233 1.98384 1.98001 1.36494 1.66443 1.16901 0.90407 0.96717 0.98257 1.23365 0.94947 0.90699 0.98516 1.76147 1.02675 1.24476 1.13341 1.78849 1.20876 0.97196 1.08048 1.47925 1.08150 1.19119 1.29795 0.64568 1.75303 1.03978 1.21799 1.10785 1.20984 0.97858 0.94405 0.92293 0.74982 0.88014 0.89320 0.91352 0.83661 0.80292 0.84949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -9.02 19.05 74.32 1.42 -7.61 16 2 C -0.14 -5.69 8.70 31.13 0.27 -5.42 16 3 C 0.23 9.85 4.76 84.57 0.40 10.26 16 4 N -0.43 -21.99 2.59 -648.87 -1.68 -23.67 16 5 C -0.35 -19.20 9.46 84.10 0.80 -18.40 16 6 H 0.08 4.81 7.26 -2.91 -0.02 4.79 16 7 C 0.01 0.32 5.17 84.95 0.44 0.76 16 8 N -0.87 -42.31 8.38 21.68 0.18 -42.13 16 9 Si 0.99 41.04 29.58 68.60 2.03 43.07 16 10 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 11 H -0.26 -10.33 7.11 99.48 0.71 -9.62 16 12 H -0.28 -11.19 7.11 99.48 0.71 -10.48 16 13 C 0.46 23.44 7.17 86.74 0.62 24.06 16 14 O -0.63 -36.84 16.65 -4.03 -0.07 -36.91 16 15 C -0.11 -4.17 4.89 -20.11 -0.10 -4.27 16 16 C -0.07 -2.15 7.55 22.56 0.17 -1.98 16 17 C -0.10 -2.36 9.80 22.22 0.22 -2.14 16 18 C 0.00 0.12 6.35 22.61 0.14 0.26 16 19 Cl -0.02 -0.47 26.18 -2.72 -0.07 -0.54 16 20 C -0.02 -0.56 5.87 -20.05 -0.12 -0.68 16 21 C 0.20 5.79 7.86 137.39 1.08 6.87 16 22 N -0.29 -8.88 12.23 -52.17 -0.64 -9.52 16 23 N -0.05 -1.29 13.47 37.02 0.50 -0.79 16 24 N -0.20 -3.24 7.90 37.02 0.29 -2.94 16 25 H 0.49 2.55 8.96 -347.54 -3.12 -0.56 16 26 N -0.27 -5.87 9.74 -52.12 -0.51 -6.37 16 27 C -0.03 -1.22 9.38 22.75 0.21 -1.01 16 28 H 0.23 6.48 7.80 -4.43 -0.03 6.45 16 29 H 0.10 4.69 6.29 -2.39 -0.02 4.67 16 30 H 0.09 3.28 5.52 -2.39 -0.01 3.27 16 31 H 0.28 12.69 8.31 -92.71 -0.77 11.92 16 32 H 0.15 4.82 4.70 -2.91 -0.01 4.81 16 33 H 0.18 3.06 8.06 -2.92 -0.02 3.04 16 34 H 0.13 5.13 7.88 -2.91 -0.02 5.11 16 Total: -1.00 -70.57 318.82 3.68 -66.89 By element: Atomic # 1 Polarization: 14.12 SS G_CDS: -1.91 Total: 12.21 kcal Atomic # 6 Polarization: -4.85 SS G_CDS: 5.56 Total: 0.71 kcal Atomic # 7 Polarization: -83.57 SS G_CDS: -1.85 Total: -85.43 kcal Atomic # 8 Polarization: -36.84 SS G_CDS: -0.07 Total: -36.91 kcal Atomic # 14 Polarization: 41.04 SS G_CDS: 2.03 Total: 43.07 kcal Atomic # 17 Polarization: -0.47 SS G_CDS: -0.07 Total: -0.54 kcal Total: -70.57 3.68 -66.89 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609020921.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 245.418 kcal (2) G-P(sol) polarization free energy of solvation -70.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 174.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.890 kcal (6) G-S(sol) free energy of system = (1) + (5) 178.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds