Wall clock time and date at job start Tue Mar 31 2020 16:36:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31297 * 1 3 3 Si 1.86805 * 119.99755 * 2 1 4 4 H 1.48503 * 109.46958 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47308 * 300.00093 * 3 2 1 6 6 H 1.48498 * 109.47103 * 60.00062 * 3 2 1 7 7 C 1.38985 * 119.99976 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99465 * 180.02562 * 7 2 1 9 9 N 1.37315 * 120.00067 * 359.97438 * 7 2 1 10 10 C 1.36503 * 126.06868 * 180.02562 * 9 7 2 11 11 C 1.35689 * 107.50576 * 179.97438 * 10 9 7 12 12 N 1.40558 * 126.07993 * 180.02562 * 11 10 9 13 13 C 1.34780 * 119.99613 * 179.97438 * 12 11 10 14 14 O 1.21666 * 119.99959 * 0.02562 * 13 12 11 15 15 C 1.47068 * 120.00072 * 179.97438 * 13 12 11 16 16 C 1.34761 * 123.35005 * 354.03203 * 15 13 12 17 17 S 1.70381 * 111.24349 * 179.97438 * 16 15 13 18 18 C 1.75523 * 92.53765 * 0.02562 * 17 16 15 19 19 C 1.34059 * 110.29844 * 359.75575 * 18 17 16 20 20 C 1.48320 * 123.69000 * 180.21639 * 19 18 17 21 21 N 1.34083 * 126.68543 * 185.99766 * 20 19 18 22 22 N 1.28983 * 107.26717 * 179.97438 * 21 20 19 23 23 N 1.28726 * 108.95680 * 0.02562 * 22 21 20 24 24 H 0.97001 * 125.33670 * 180.02562 * 23 22 21 25 25 N 1.28868 * 109.32969 * 359.72752 * 23 22 21 26 26 C 1.40653 * 107.83191 * 359.97438 * 11 10 9 27 27 N 1.30907 * 108.39389 * 359.97438 * 26 11 10 28 28 H 0.97006 * 119.99955 * 0.02562 * 1 2 3 29 29 H 1.08001 * 126.24814 * 0.03200 * 10 9 7 30 30 H 0.97002 * 120.00725 * 359.97438 * 12 11 10 31 31 H 1.07997 * 124.38033 * 359.96513 * 16 15 13 32 32 H 1.08001 * 124.84907 * 180.02562 * 18 17 16 33 33 H 1.08002 * 125.80287 * 179.74025 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3130 0.0000 0.0000 3 14 2.2469 1.6178 0.0000 4 1 3.7070 1.3465 0.0006 5 1 1.8882 2.3965 -1.2125 6 1 1.8882 2.3965 1.2125 7 6 2.0079 -1.2036 -0.0005 8 1 3.0879 -1.2035 -0.0001 9 7 1.3213 -2.3928 -0.0005 10 6 1.8750 -3.6405 -0.0005 11 6 0.8578 -4.5385 0.0000 12 7 0.9891 -5.9379 0.0007 13 6 -0.1102 -6.7178 0.0018 14 8 -1.2160 -6.2104 0.0017 15 6 0.0270 -8.1821 0.0020 16 6 1.2107 -8.8153 -0.1159 17 16 1.0124 -10.5071 -0.0776 18 6 -0.7287 -10.3771 0.1033 19 6 -1.0982 -9.0888 0.1340 20 6 -2.5038 -8.6394 0.2826 21 7 -2.9536 -7.3784 0.2092 22 7 -4.2299 -7.4160 0.3918 23 7 -4.5904 -8.6381 0.5750 24 1 -5.4993 -8.9371 0.7343 25 7 -3.5553 -9.4028 0.5074 26 6 -0.3512 -3.8198 0.0010 27 7 -0.0715 -2.5409 0.0016 28 1 -0.4850 0.8401 -0.0004 29 1 2.9302 -3.8709 -0.0001 30 1 1.8707 -6.3425 0.0005 31 1 2.1621 -8.3151 -0.2212 32 1 -1.4051 -11.2153 0.1832 33 1 -1.3419 -4.2498 -0.0023 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001609496418.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:36:28 Heat of formation + Delta-G solvation = 240.242140 kcal Electronic energy + Delta-G solvation = -24508.808458 eV Core-core repulsion = 20703.067546 eV Total energy + Delta-G solvation = -3805.740912 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 331.059 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -44.17173 -39.92401 -38.89337 -36.91198 -34.24619 -33.85535 -33.24309 -32.72198 -30.30489 -29.85620 -27.57780 -25.86814 -24.80998 -24.08210 -23.37050 -21.25489 -20.70075 -19.75275 -19.20619 -18.51978 -17.71328 -17.37377 -16.90245 -16.59703 -15.40480 -15.09519 -14.97468 -14.55401 -13.95661 -13.80175 -13.34268 -13.24478 -13.17936 -13.03467 -12.73281 -12.65791 -11.85521 -11.61468 -11.44397 -11.27800 -11.22445 -11.07470 -10.88087 -10.82490 -10.63277 -10.45808 -10.01059 -9.08244 -9.06108 -8.80718 -8.67494 -8.50539 -7.94871 -6.57152 -6.48076 -4.13838 0.53283 1.12351 1.24468 1.61844 1.67216 2.40389 2.78400 3.00448 3.09471 3.15362 3.51124 3.65695 3.86815 3.93158 3.95257 4.39251 4.59748 4.69542 4.86894 5.09828 5.12509 5.28940 5.39276 5.61231 5.67017 5.89058 5.97015 6.33483 6.53422 6.58443 6.99938 7.08885 7.25754 7.37223 7.95157 8.31606 8.39463 8.46620 8.75363 9.04508 9.47446 9.78022 10.47939 Molecular weight = 331.06amu Principal moments of inertia in cm(-1) A = 0.018085 B = 0.003016 C = 0.002589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1547.903995 B = 9281.011934 C =10811.584102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.770 5.770 2 C 0.046 3.954 3 Si 0.933 3.067 4 H -0.264 1.264 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.323 4.323 8 H 0.115 0.885 9 N -0.145 5.145 10 C -0.085 4.085 11 C -0.054 4.054 12 N -0.620 5.620 13 C 0.535 3.465 14 O -0.472 6.472 15 C -0.104 4.104 16 C -0.223 4.223 17 S 0.206 5.794 18 C -0.198 4.198 19 C 0.015 3.985 20 C 0.219 3.781 21 N -0.173 5.173 22 N -0.067 5.067 23 N -0.240 5.240 24 H 0.469 0.531 25 N -0.304 5.304 26 C -0.029 4.029 27 N -0.260 5.260 28 H 0.273 0.727 29 H 0.144 0.856 30 H 0.391 0.609 31 H 0.176 0.824 32 H 0.178 0.822 33 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.005 -21.853 0.556 21.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.396 5.396 2 C -0.171 4.171 3 Si 0.757 3.243 4 H -0.188 1.188 5 H -0.200 1.200 6 H -0.200 1.200 7 C -0.455 4.455 8 H 0.133 0.867 9 N 0.087 4.913 10 C -0.236 4.236 11 C -0.160 4.160 12 N -0.264 5.264 13 C 0.318 3.682 14 O -0.344 6.344 15 C -0.122 4.122 16 C -0.361 4.361 17 S 0.473 5.527 18 C -0.337 4.337 19 C -0.001 4.001 20 C -0.063 4.063 21 N -0.047 5.047 22 N -0.064 5.064 23 N -0.084 5.084 24 H 0.322 0.678 25 N -0.157 5.157 26 C -0.205 4.205 27 N -0.091 5.091 28 H 0.084 0.916 29 H 0.161 0.839 30 H 0.224 0.776 31 H 0.194 0.806 32 H 0.195 0.805 33 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -0.928 -20.866 0.473 20.892 hybrid contribution 0.173 0.310 0.196 0.405 sum -0.755 -20.557 0.670 20.581 Atomic orbital electron populations 1.70237 1.06072 1.27724 1.35607 1.25626 0.95681 1.00178 0.95616 0.85789 0.79607 0.80457 0.78412 1.18758 1.19973 1.19987 1.19879 0.91609 0.80611 1.53438 0.86710 1.44542 1.04094 1.03224 1.39426 1.21227 0.96723 0.85459 1.20233 1.17227 0.94331 0.81028 1.23383 1.42347 1.07677 1.04461 1.71908 1.17460 0.85305 0.84841 0.80575 1.90955 1.23420 1.73110 1.46868 1.19931 0.91028 0.95318 1.05949 1.25259 1.02319 1.00162 1.08320 1.82972 0.99699 1.01368 1.68679 1.25647 0.99912 0.99634 1.08547 1.16833 0.87007 0.91324 1.04924 1.22924 0.93249 0.87131 1.02987 1.77382 0.97352 1.16977 1.13004 1.79237 1.09956 1.03165 1.14015 1.47791 1.11014 1.03602 1.45966 0.67827 1.74771 0.94591 1.23729 1.22591 1.24215 0.98245 0.90585 1.07450 1.78258 0.90015 1.15222 1.25647 0.91606 0.83878 0.77593 0.80617 0.80479 0.80297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -21.97 11.81 55.49 0.66 -21.32 16 2 C 0.05 1.21 5.50 -17.50 -0.10 1.11 16 3 Si 0.93 19.29 29.55 -169.99 -5.02 14.27 16 4 H -0.26 -5.17 7.11 56.52 0.40 -4.76 16 5 H -0.27 -5.63 7.11 56.52 0.40 -5.22 16 6 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 7 C -0.32 -8.71 10.25 -14.82 -0.15 -8.87 16 8 H 0.12 2.77 7.83 -52.49 -0.41 2.36 16 9 N -0.14 -4.06 3.74 -11.41 -0.04 -4.10 16 10 C -0.09 -2.05 11.49 -16.38 -0.19 -2.23 16 11 C -0.05 -1.28 6.90 -83.85 -0.58 -1.85 16 12 N -0.62 -11.38 5.43 -11.07 -0.06 -11.44 16 13 C 0.54 9.97 7.74 -12.68 -0.10 9.87 16 14 O -0.47 -10.46 9.62 5.22 0.05 -10.41 16 15 C -0.10 -1.48 5.95 -104.83 -0.62 -2.10 16 16 C -0.22 -2.25 10.30 29.50 0.30 -1.94 16 17 S 0.21 1.56 23.01 -107.50 -2.47 -0.92 16 18 C -0.20 -1.93 10.93 29.26 0.32 -1.61 16 19 C 0.01 0.20 5.99 -104.50 -0.63 -0.43 16 20 C 0.22 3.40 7.95 -156.29 -1.24 2.16 16 21 N -0.17 -3.21 8.31 32.14 0.27 -2.94 16 22 N -0.07 -1.05 13.47 60.35 0.81 -0.24 16 23 N -0.24 -2.68 7.90 60.35 0.48 -2.20 16 24 H 0.47 2.70 8.96 -340.36 -3.05 -0.36 16 25 N -0.30 -3.87 12.32 32.15 0.40 -3.47 16 26 C -0.03 -0.79 10.85 -17.04 -0.18 -0.97 16 27 N -0.26 -7.76 10.40 30.80 0.32 -7.44 16 28 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 29 H 0.14 2.85 8.06 -52.49 -0.42 2.42 16 30 H 0.39 5.47 7.32 -40.82 -0.30 5.17 16 31 H 0.18 1.34 6.99 -52.49 -0.37 0.97 16 32 H 0.18 1.34 8.06 -52.49 -0.42 0.92 16 33 H 0.18 4.88 5.91 -52.49 -0.31 4.57 16 LS Contribution 312.17 15.07 4.70 4.70 Total: -1.00 -37.24 312.17 -7.50 -44.75 By element: Atomic # 1 Polarization: 12.04 SS G_CDS: -4.42 Total: 7.62 kcal Atomic # 6 Polarization: -3.70 SS G_CDS: -3.17 Total: -6.87 kcal Atomic # 7 Polarization: -55.98 SS G_CDS: 2.83 Total: -53.15 kcal Atomic # 8 Polarization: -10.46 SS G_CDS: 0.05 Total: -10.41 kcal Atomic # 14 Polarization: 19.29 SS G_CDS: -5.02 Total: 14.27 kcal Atomic # 16 Polarization: 1.56 SS G_CDS: -2.47 Total: -0.92 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -37.24 -7.50 -44.75 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609496418.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 284.990 kcal (2) G-P(sol) polarization free energy of solvation -37.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 247.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.748 kcal (6) G-S(sol) free energy of system = (1) + (5) 240.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds