Wall clock time and date at job start Tue Mar 31 2020 16:36:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31297 * 1 3 3 Si 1.86805 * 119.99755 * 2 1 4 4 H 1.48503 * 109.46958 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47308 * 300.00093 * 3 2 1 6 6 H 1.48498 * 109.47103 * 60.00062 * 3 2 1 7 7 C 1.38985 * 119.99976 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99465 * 180.02562 * 7 2 1 9 9 N 1.37315 * 120.00067 * 359.97438 * 7 2 1 10 10 C 1.36503 * 126.06868 * 180.02562 * 9 7 2 11 11 C 1.35689 * 107.50576 * 179.97438 * 10 9 7 12 12 N 1.40558 * 126.07993 * 180.02562 * 11 10 9 13 13 C 1.34780 * 119.99613 * 179.97438 * 12 11 10 14 14 O 1.21666 * 119.99959 * 0.02562 * 13 12 11 15 15 C 1.47068 * 120.00072 * 179.97438 * 13 12 11 16 16 C 1.34761 * 123.35005 * 354.03203 * 15 13 12 17 17 S 1.70381 * 111.24349 * 179.97438 * 16 15 13 18 18 C 1.75523 * 92.53765 * 0.02562 * 17 16 15 19 19 C 1.34059 * 110.29844 * 359.75575 * 18 17 16 20 20 C 1.48320 * 123.69000 * 180.21639 * 19 18 17 21 21 N 1.34083 * 126.68543 * 185.99766 * 20 19 18 22 22 N 1.28983 * 107.26717 * 179.97438 * 21 20 19 23 23 N 1.28726 * 108.95680 * 0.02562 * 22 21 20 24 24 H 0.97001 * 125.33670 * 180.02562 * 23 22 21 25 25 N 1.28868 * 109.32969 * 359.72752 * 23 22 21 26 26 C 1.40653 * 107.83191 * 359.97438 * 11 10 9 27 27 N 1.30907 * 108.39389 * 359.97438 * 26 11 10 28 28 H 0.97006 * 119.99955 * 0.02562 * 1 2 3 29 29 H 1.08001 * 126.24814 * 0.03200 * 10 9 7 30 30 H 0.97002 * 120.00725 * 359.97438 * 12 11 10 31 31 H 1.07997 * 124.38033 * 359.96513 * 16 15 13 32 32 H 1.08001 * 124.84907 * 180.02562 * 18 17 16 33 33 H 1.08002 * 125.80287 * 179.74025 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3130 0.0000 0.0000 3 14 2.2469 1.6178 0.0000 4 1 3.7070 1.3465 0.0006 5 1 1.8882 2.3965 -1.2125 6 1 1.8882 2.3965 1.2125 7 6 2.0079 -1.2036 -0.0005 8 1 3.0879 -1.2035 -0.0001 9 7 1.3213 -2.3928 -0.0005 10 6 1.8750 -3.6405 -0.0005 11 6 0.8578 -4.5385 0.0000 12 7 0.9891 -5.9379 0.0007 13 6 -0.1102 -6.7178 0.0018 14 8 -1.2160 -6.2104 0.0017 15 6 0.0270 -8.1821 0.0020 16 6 1.2107 -8.8153 -0.1159 17 16 1.0124 -10.5071 -0.0776 18 6 -0.7287 -10.3771 0.1033 19 6 -1.0982 -9.0888 0.1340 20 6 -2.5038 -8.6394 0.2826 21 7 -2.9536 -7.3784 0.2092 22 7 -4.2299 -7.4160 0.3918 23 7 -4.5904 -8.6381 0.5750 24 1 -5.4993 -8.9371 0.7343 25 7 -3.5553 -9.4028 0.5074 26 6 -0.3512 -3.8198 0.0010 27 7 -0.0715 -2.5409 0.0016 28 1 -0.4850 0.8401 -0.0004 29 1 2.9302 -3.8709 -0.0001 30 1 1.8707 -6.3425 0.0005 31 1 2.1621 -8.3151 -0.2212 32 1 -1.4051 -11.2153 0.1832 33 1 -1.3419 -4.2498 -0.0023 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001609496418.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:36:27 Heat of formation + Delta-G solvation = 211.199661 kcal Electronic energy + Delta-G solvation = -24510.067834 eV Core-core repulsion = 20703.067546 eV Total energy + Delta-G solvation = -3807.000288 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 331.059 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -45.24818 -41.64351 -40.39002 -38.05598 -35.84001 -35.14931 -34.85683 -33.92042 -32.20443 -31.02394 -29.33429 -27.09581 -26.46222 -25.22837 -24.55400 -22.78919 -22.33160 -21.18571 -20.66972 -19.73820 -19.11522 -18.58131 -17.98102 -17.73621 -17.36336 -16.67392 -16.17256 -15.98842 -15.61747 -15.05329 -14.96447 -14.73473 -14.54535 -13.96941 -13.91403 -13.78758 -13.43905 -13.21845 -12.91678 -12.89992 -12.79706 -12.21110 -12.18120 -12.01106 -11.83222 -11.79511 -11.70623 -10.93750 -10.74459 -10.23449 -10.03515 -9.91596 -9.27221 -8.42565 -8.40885 -6.18627 -0.28010 0.08061 0.52970 0.56428 0.82421 1.30805 1.41271 1.57794 1.60523 1.62861 1.84107 2.09670 2.28786 2.37745 2.82445 2.89282 3.00984 3.13822 3.41353 3.85555 4.14185 4.34424 4.43689 4.50634 4.59045 4.67815 4.75836 4.93759 5.04323 5.07916 5.25677 5.35702 5.61433 5.74967 6.01663 6.41060 6.80094 6.89447 7.35805 7.52356 7.61795 7.77282 8.57153 Molecular weight = 331.06amu Principal moments of inertia in cm(-1) A = 0.018085 B = 0.003016 C = 0.002589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1547.903995 B = 9281.011934 C =10811.584102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.827 5.827 2 C -0.009 4.009 3 Si 1.020 2.980 4 H -0.239 1.239 5 H -0.273 1.273 6 H -0.274 1.274 7 C -0.354 4.354 8 H 0.141 0.859 9 N -0.171 5.171 10 C -0.082 4.082 11 C -0.036 4.036 12 N -0.615 5.615 13 C 0.530 3.470 14 O -0.513 6.513 15 C -0.144 4.144 16 C -0.213 4.213 17 S 0.323 5.677 18 C -0.192 4.192 19 C -0.025 4.025 20 C 0.206 3.794 21 N -0.230 5.230 22 N -0.093 5.093 23 N -0.208 5.208 24 H 0.489 0.511 25 N -0.290 5.290 26 C -0.058 4.058 27 N -0.311 5.311 28 H 0.275 0.725 29 H 0.189 0.811 30 H 0.414 0.586 31 H 0.202 0.798 32 H 0.200 0.800 33 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.264 -24.962 0.546 25.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.455 5.455 2 C -0.220 4.220 3 Si 0.839 3.161 4 H -0.162 1.162 5 H -0.199 1.199 6 H -0.199 1.199 7 C -0.485 4.485 8 H 0.159 0.841 9 N 0.060 4.940 10 C -0.232 4.232 11 C -0.142 4.142 12 N -0.262 5.262 13 C 0.316 3.684 14 O -0.386 6.386 15 C -0.162 4.162 16 C -0.351 4.351 17 S 0.590 5.410 18 C -0.331 4.331 19 C -0.040 4.040 20 C -0.075 4.075 21 N -0.103 5.103 22 N -0.089 5.089 23 N -0.058 5.058 24 H 0.347 0.653 25 N -0.144 5.144 26 C -0.233 4.233 27 N -0.144 5.144 28 H 0.084 0.916 29 H 0.206 0.794 30 H 0.251 0.749 31 H 0.219 0.781 32 H 0.217 0.783 33 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 2.347 -24.047 0.465 24.166 hybrid contribution -0.837 0.863 0.205 1.220 sum 1.509 -23.184 0.670 23.242 Atomic orbital electron populations 1.70433 1.08485 1.28847 1.37765 1.26896 0.96454 1.04377 0.94260 0.84531 0.79089 0.74417 0.78088 1.16186 1.19868 1.19905 1.20640 0.92928 0.80919 1.53974 0.84146 1.44831 1.03593 1.04796 1.40806 1.21971 0.98723 0.84176 1.18315 1.17292 0.92738 0.83608 1.20585 1.42257 1.09269 1.02184 1.72480 1.18279 0.84484 0.86965 0.78676 1.90956 1.25060 1.74525 1.48090 1.19489 0.93096 0.92432 1.11153 1.25712 1.01921 1.02694 1.04746 1.82723 0.96251 0.97345 1.64695 1.26050 1.02550 0.98685 1.05820 1.16980 0.86037 0.92727 1.08208 1.23437 0.94834 0.86457 1.02786 1.77354 0.98371 1.19256 1.15280 1.79143 1.09657 1.04732 1.15346 1.47834 1.11906 1.02550 1.43481 0.65265 1.74728 0.94261 1.23107 1.22333 1.24176 0.99134 0.90849 1.09157 1.78145 0.92070 1.16659 1.27485 0.91582 0.79429 0.74881 0.78055 0.78333 0.81750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -49.52 11.81 21.66 0.26 -49.26 16 2 C -0.01 -0.47 5.50 84.95 0.47 -0.01 16 3 Si 1.02 39.79 29.55 68.60 2.03 41.82 16 4 H -0.24 -8.28 7.11 99.48 0.71 -7.58 16 5 H -0.27 -10.50 7.11 99.48 0.71 -9.80 16 6 H -0.27 -10.53 7.11 99.48 0.71 -9.82 16 7 C -0.35 -19.26 10.25 84.01 0.86 -18.40 16 8 H 0.14 6.60 7.83 -2.91 -0.02 6.58 16 9 N -0.17 -9.81 3.74 -190.00 -0.71 -10.52 16 10 C -0.08 -3.89 11.49 83.38 0.96 -2.93 16 11 C -0.04 -1.73 6.90 37.74 0.26 -1.47 16 12 N -0.62 -22.36 5.43 -307.15 -1.67 -24.03 16 13 C 0.53 20.19 7.74 86.56 0.67 20.86 16 14 O -0.51 -24.23 9.62 -4.24 -0.04 -24.27 16 15 C -0.14 -3.92 5.95 -20.00 -0.12 -4.04 16 16 C -0.21 -3.49 10.30 67.02 0.69 -2.80 16 17 S 0.32 3.18 23.01 -56.49 -1.30 1.88 16 18 C -0.19 -3.08 10.93 66.87 0.73 -2.35 16 19 C -0.02 -0.64 5.99 -19.78 -0.12 -0.76 16 20 C 0.21 6.55 7.95 137.31 1.09 7.64 16 21 N -0.23 -9.06 8.31 -52.24 -0.43 -9.50 16 22 N -0.09 -3.08 13.47 37.02 0.50 -2.58 16 23 N -0.21 -4.70 7.90 37.02 0.29 -4.40 16 24 H 0.49 5.42 8.96 -347.53 -3.12 2.31 16 25 N -0.29 -7.28 12.32 -52.19 -0.64 -7.93 16 26 C -0.06 -3.33 10.85 85.42 0.93 -2.41 16 27 N -0.31 -19.66 10.40 -56.46 -0.59 -20.24 16 28 H 0.27 15.11 8.31 -92.70 -0.77 14.34 16 29 H 0.19 6.95 8.06 -2.91 -0.02 6.93 16 30 H 0.41 10.68 7.32 -92.71 -0.68 10.00 16 31 H 0.20 2.09 6.99 -2.91 -0.02 2.07 16 32 H 0.20 2.20 8.06 -2.91 -0.02 2.18 16 33 H 0.17 9.84 5.91 -2.91 -0.02 9.82 16 Total: -1.00 -90.23 312.17 1.56 -88.67 By element: Atomic # 1 Polarization: 29.58 SS G_CDS: -2.55 Total: 27.03 kcal Atomic # 6 Polarization: -13.07 SS G_CDS: 6.42 Total: -6.66 kcal Atomic # 7 Polarization: -125.47 SS G_CDS: -3.00 Total: -128.47 kcal Atomic # 8 Polarization: -24.23 SS G_CDS: -0.04 Total: -24.27 kcal Atomic # 14 Polarization: 39.79 SS G_CDS: 2.03 Total: 41.82 kcal Atomic # 16 Polarization: 3.18 SS G_CDS: -1.30 Total: 1.88 kcal Total: -90.23 1.56 -88.67 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609496418.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 299.868 kcal (2) G-P(sol) polarization free energy of solvation -90.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 209.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.668 kcal (6) G-S(sol) free energy of system = (1) + (5) 211.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds