Wall clock time and date at job start Tue Mar 31 2020 16:00:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86797 * 119.99888 * 2 1 4 4 H 1.48504 * 109.47259 * 239.99980 * 3 2 1 5 5 H 1.48503 * 109.47321 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.47144 * 119.99937 * 3 2 1 7 7 C 1.37877 * 119.99892 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99604 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00081 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.46649 * 179.97438 * 9 7 2 11 11 N 1.46503 * 109.46598 * 179.97438 * 10 9 7 12 12 C 1.34777 * 119.99759 * 179.97438 * 11 10 9 13 13 O 1.21614 * 120.00111 * 359.97438 * 12 11 10 14 14 C 1.47315 * 120.00065 * 179.97438 * 12 11 10 15 15 C 1.39824 * 120.17528 * 5.93162 * 14 12 11 16 16 C 1.37725 * 119.93780 * 179.97438 * 15 14 12 17 17 Cl 1.73600 * 119.84797 * 180.02562 * 16 15 14 18 18 C 1.38992 * 120.29927 * 0.02562 * 16 15 14 19 19 F 1.35101 * 119.81912 * 179.97438 * 18 16 15 20 20 C 1.38229 * 120.36056 * 0.02562 * 18 16 15 21 21 N 1.48026 * 119.97425 * 179.97438 * 20 18 16 22 22 O 1.21796 * 120.00034 * 89.99752 * 21 20 18 23 23 O 1.21806 * 119.99536 * 270.00152 * 21 20 18 24 24 C 1.38827 * 120.05771 * 359.95733 * 20 18 16 25 25 N 1.38933 * 120.15532 * 179.97438 * 24 20 18 26 26 H 0.97002 * 120.00146 * 0.02562 * 1 2 3 27 27 H 1.08991 * 109.47685 * 59.99710 * 9 7 2 28 28 H 1.09006 * 109.46841 * 299.99444 * 9 7 2 29 29 H 1.08996 * 109.47311 * 60.00269 * 10 9 7 30 30 H 1.08994 * 109.47522 * 299.99204 * 10 9 7 31 31 H 0.97003 * 120.00455 * 359.97438 * 11 10 9 32 32 H 1.08008 * 120.03265 * 0.25580 * 15 14 12 33 33 H 0.97005 * 119.99301 * 354.46875 * 25 24 20 34 34 H 0.96995 * 120.00102 * 174.46367 * 25 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0005 11 7 1.5129 -4.9308 0.0012 12 6 2.1868 -6.0979 0.0007 13 8 3.4029 -6.0979 -0.0006 14 6 1.4503 -7.3738 0.0019 15 6 0.0575 -7.3814 -0.1214 16 6 -0.6261 -8.5770 -0.1203 17 17 -2.3553 -8.5837 -0.2742 18 6 0.0622 -9.7782 0.0036 19 9 -0.6182 -10.9453 0.0041 20 6 1.4389 -9.7850 0.1274 21 7 2.1632 -11.0692 0.2594 22 8 2.5552 -11.6523 -0.7354 23 8 2.3671 -11.5427 1.3630 24 6 2.1429 -8.5885 0.1276 25 7 3.5267 -8.5930 0.2525 26 1 -0.4850 0.8400 -0.0004 27 1 0.6247 -2.5572 -0.8895 28 1 0.6241 -2.5567 0.8904 29 1 2.8720 -3.6043 0.8905 30 1 2.8720 -3.6044 -0.8895 31 1 0.5428 -4.9308 0.0019 32 1 -0.4814 -6.4507 -0.2221 33 1 3.9957 -9.4254 0.4200 34 1 4.0235 -7.7639 0.1720 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001638447492.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:00:41 Heat of formation + Delta-G solvation = -79.310845 kcal Electronic energy + Delta-G solvation = -25166.064136 eV Core-core repulsion = 20849.067934 eV Total energy + Delta-G solvation = -4316.996203 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 331.057 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -50.88863 -43.58122 -41.87996 -39.83775 -38.05771 -37.88020 -36.96926 -35.92870 -34.83137 -33.47092 -31.67047 -30.48789 -27.88157 -27.01432 -25.22940 -24.09612 -22.95120 -22.28205 -20.79170 -20.18037 -19.86447 -19.61817 -18.64815 -18.39961 -18.01145 -17.60309 -17.34818 -17.11255 -16.68195 -16.63306 -16.47503 -15.56361 -15.26269 -14.92579 -14.82622 -14.50330 -14.27955 -13.96979 -13.71506 -13.21274 -13.04068 -12.92580 -12.66330 -12.54594 -12.51422 -12.32761 -12.24057 -11.76422 -11.71683 -11.48463 -11.17265 -11.01257 -10.58692 -10.19305 -9.39783 -8.22471 -6.31806 -1.20752 -0.94840 -0.59868 -0.17932 0.68358 1.04104 1.44541 1.45043 1.52878 1.76831 1.94595 2.04696 2.30252 2.43064 2.92719 3.06160 3.13484 3.28566 3.50931 3.75247 4.10046 4.20117 4.42291 4.51989 4.54028 4.86910 4.88891 5.07638 5.46286 5.57958 5.61657 5.80046 6.12794 6.14030 6.19356 6.35817 6.81554 6.99870 7.37630 8.88748 Molecular weight = 331.06amu Principal moments of inertia in cm(-1) A = 0.017839 B = 0.002748 C = 0.002411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1569.246801 B =10185.266669 C =11608.975880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.010 3.990 3 Si 0.958 3.042 4 H -0.269 1.269 5 H -0.284 1.284 6 H -0.270 1.270 7 C -0.546 4.546 8 H 0.060 0.940 9 C 0.019 3.981 10 C 0.139 3.861 11 N -0.699 5.699 12 C 0.573 3.427 13 O -0.571 6.571 14 C -0.207 4.207 15 C 0.057 3.943 16 C -0.131 4.131 17 Cl -0.012 7.012 18 C 0.233 3.767 19 F -0.107 7.107 20 C -0.168 4.168 21 N 0.026 4.974 22 O -0.133 6.133 23 O -0.134 6.134 24 C 0.352 3.648 25 N -0.821 5.821 26 H 0.265 0.735 27 H 0.013 0.987 28 H 0.012 0.988 29 H 0.056 0.944 30 H 0.057 0.943 31 H 0.413 0.587 32 H 0.192 0.808 33 H 0.405 0.595 34 H 0.433 0.567 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.880 -19.291 -0.114 19.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.189 4.189 3 Si 0.783 3.217 4 H -0.194 1.194 5 H -0.210 1.210 6 H -0.195 1.195 7 C -0.584 4.584 8 H 0.079 0.921 9 C -0.018 4.018 10 C 0.016 3.984 11 N -0.348 5.348 12 C 0.362 3.638 13 O -0.454 6.454 14 C -0.216 4.216 15 C 0.037 3.963 16 C -0.162 4.162 17 Cl 0.017 6.983 18 C 0.211 3.789 19 F -0.085 7.085 20 C -0.256 4.256 21 N 0.558 4.442 22 O -0.356 6.356 23 O -0.357 6.357 24 C 0.231 3.769 25 N -0.365 5.365 26 H 0.074 0.926 27 H 0.031 0.969 28 H 0.031 0.969 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.251 0.749 32 H 0.209 0.791 33 H 0.234 0.766 34 H 0.279 0.721 Dipole moment (debyes) X Y Z Total from point charges -1.649 -18.406 -0.197 18.481 hybrid contribution 0.097 0.178 0.081 0.219 sum -1.552 -18.228 -0.117 18.294 Atomic orbital electron populations 1.70029 1.07402 1.27973 1.51013 1.25785 0.95707 1.02834 0.94599 0.85597 0.78364 0.78629 0.79062 1.19428 1.20980 1.19462 1.21442 0.93666 0.91910 1.51407 0.92143 1.19166 0.94340 0.91524 0.96797 1.21380 0.95070 0.81063 1.00842 1.45932 1.11350 1.05234 1.72272 1.17681 0.86553 0.83371 0.76222 1.90404 1.14530 1.86546 1.53871 1.19054 0.93545 0.90840 1.18170 1.21475 0.91214 0.98444 0.85137 1.20112 0.88470 0.91475 1.16144 1.98440 1.04724 1.98659 1.96446 1.16683 0.85563 0.82180 0.94474 1.91647 1.79226 1.45193 1.92392 1.19874 0.90981 0.83504 1.31254 1.43137 0.99182 1.01515 1.00415 1.94598 1.51599 1.60597 1.28831 1.94600 1.59159 1.68414 1.13502 1.16876 0.85540 0.89008 0.85495 1.43744 1.02884 1.16770 1.73131 0.92622 0.96865 0.96940 0.92525 0.92445 0.74892 0.79143 0.76583 0.72091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.22 13.29 21.45 0.28 -50.93 16 2 C 0.01 0.52 5.46 84.65 0.46 0.98 16 3 Si 0.96 41.29 29.54 68.60 2.03 43.32 16 4 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 5 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 6 H -0.27 -11.28 7.11 99.48 0.71 -10.58 16 7 C -0.55 -28.02 9.11 25.60 0.23 -27.79 16 8 H 0.06 3.02 7.74 -2.91 -0.02 2.99 16 9 C 0.02 0.85 5.09 29.85 0.15 1.00 16 10 C 0.14 4.97 5.61 86.38 0.48 5.45 16 11 N -0.70 -18.66 5.50 -466.48 -2.57 -21.23 16 12 C 0.57 14.82 7.74 86.63 0.67 15.49 16 13 O -0.57 -17.58 13.64 -4.08 -0.06 -17.63 16 14 C -0.21 -4.17 5.89 -19.98 -0.12 -4.29 16 15 C 0.06 0.88 9.28 22.53 0.21 1.09 16 16 C -0.13 -2.20 6.32 22.33 0.14 -2.06 16 17 Cl -0.01 -0.18 28.59 -2.72 -0.08 -0.26 16 18 C 0.23 4.63 7.27 22.45 0.16 4.80 16 19 F -0.11 -2.26 16.63 44.97 0.75 -1.51 16 20 C -0.17 -3.62 6.17 36.51 0.23 -3.39 16 21 N 0.03 0.62 3.30 -46.12 -0.15 0.47 16 22 O -0.13 -3.30 19.25 18.89 0.36 -2.94 16 23 O -0.13 -3.30 19.26 18.88 0.36 -2.93 16 24 C 0.35 7.43 6.76 38.68 0.26 7.69 16 25 N -0.82 -16.79 8.92 -50.95 -0.45 -17.24 16 26 H 0.26 13.95 8.31 -92.71 -0.77 13.18 16 27 H 0.01 0.61 8.14 -2.39 -0.02 0.59 16 28 H 0.01 0.57 8.14 -2.38 -0.02 0.55 16 29 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 30 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 31 H 0.41 8.78 6.53 -92.71 -0.61 8.17 16 32 H 0.19 1.98 6.45 -2.91 -0.02 1.97 16 33 H 0.40 7.26 8.08 -92.70 -0.75 6.51 16 34 H 0.43 9.80 5.33 -94.94 -0.51 9.29 16 Total: -1.00 -59.69 328.95 2.73 -56.96 By element: Atomic # 1 Polarization: 15.58 SS G_CDS: -0.63 Total: 14.95 kcal Atomic # 6 Polarization: -3.90 SS G_CDS: 2.89 Total: -1.01 kcal Atomic # 7 Polarization: -86.04 SS G_CDS: -2.89 Total: -88.93 kcal Atomic # 8 Polarization: -24.17 SS G_CDS: 0.67 Total: -23.50 kcal Atomic # 9 Polarization: -2.26 SS G_CDS: 0.75 Total: -1.51 kcal Atomic # 14 Polarization: 41.29 SS G_CDS: 2.03 Total: 43.32 kcal Atomic # 17 Polarization: -0.18 SS G_CDS: -0.08 Total: -0.26 kcal Total: -59.69 2.73 -56.96 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001638447492.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.351 kcal (2) G-P(sol) polarization free energy of solvation -59.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds