Wall clock time and date at job start Tue Mar 31 2020 16:21:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.35657 * 116.99861 * 2 1 4 4 C 1.38542 * 120.12521 * 0.26355 * 3 2 1 5 5 C 1.38238 * 120.24687 * 180.24855 * 4 3 2 6 6 C 1.38284 * 120.50029 * 359.74288 * 5 4 3 7 7 S 1.76203 * 119.87750 * 180.02562 * 6 5 4 8 8 N 1.65600 * 107.21413 * 114.97869 * 7 6 5 9 9 O 1.42101 * 106.40430 * 228.51921 * 7 6 5 10 10 O 1.42101 * 106.40164 * 1.44016 * 7 6 5 11 11 C 1.38502 * 120.24581 * 359.97438 * 6 5 4 12 12 O 1.35659 * 120.12740 * 180.02562 * 11 6 5 13 13 C 1.42901 * 116.99978 * 269.98145 * 12 11 6 14 14 C 1.40326 * 120.12770 * 179.97438 * 3 2 1 15 15 C 1.47044 * 120.24366 * 0.03207 * 14 3 2 16 16 O 1.21583 * 119.99880 * 269.71981 * 15 14 3 17 17 O 1.34807 * 120.00406 * 89.44200 * 15 14 3 18 18 C 1.34878 * 117.00389 * 180.27226 * 17 15 14 19 19 H 1.07993 * 119.99826 * 0.02562 * 18 17 15 20 20 C 1.38782 * 119.99739 * 179.97438 * 18 17 15 21 21 N 1.31431 * 120.00461 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 119.99480 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47099 * 90.00414 * 22 20 18 24 24 H 1.48499 * 109.46984 * 210.00198 * 22 20 18 25 25 H 1.48495 * 109.47185 * 330.00428 * 22 20 18 26 26 H 1.09004 * 109.47670 * 59.99651 * 1 2 3 27 27 H 1.09006 * 109.47064 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47085 * 299.99317 * 1 2 3 29 29 H 1.08000 * 119.88022 * 359.97001 * 4 3 2 30 30 H 1.07995 * 119.75400 * 179.71345 * 5 4 3 31 31 H 0.97010 * 119.99805 * 150.00741 * 8 7 6 32 32 H 0.96996 * 120.00379 * 329.99284 * 8 7 6 33 33 H 1.09002 * 109.47056 * 179.97438 * 13 12 11 34 34 H 1.08998 * 109.47369 * 299.99488 * 13 12 11 35 35 H 1.08996 * 109.47194 * 59.99810 * 13 12 11 36 36 H 0.97002 * 120.00116 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0448 1.2087 0.0000 4 6 1.2927 2.3723 0.0055 5 6 1.9176 3.6053 0.0003 6 6 3.2977 3.6927 -0.0050 7 16 4.0771 5.2730 -0.0109 8 7 4.8984 5.4197 1.4196 9 8 5.0605 5.2316 -1.0358 10 8 3.0326 6.2357 0.0255 11 6 4.0696 2.5427 -0.0047 12 8 5.4233 2.6313 -0.0095 13 6 6.0664 2.6701 -1.2850 14 6 3.4459 1.2853 0.0005 15 6 4.2548 0.0573 0.0004 16 8 4.5931 -0.4479 1.0533 17 8 4.6166 -0.5115 -1.1670 18 6 5.3533 -1.6391 -1.0965 19 1 5.6265 -2.0463 -0.1343 20 6 5.7592 -2.2766 -2.2605 21 7 5.4263 -1.7813 -3.4315 22 14 6.7789 -3.8387 -2.1628 23 1 5.8765 -5.0174 -2.1271 24 1 7.6630 -3.9279 -3.3526 25 1 7.6079 -3.8124 -0.9310 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5137 0.8900 29 1 0.2142 2.3158 0.0093 30 1 1.3236 4.5072 0.0000 31 1 5.7048 5.9572 1.4630 32 1 4.5730 4.9685 2.2142 33 1 7.1452 2.7415 -1.1459 34 1 5.8305 1.7613 -1.8386 35 1 5.7142 3.5374 -1.8433 36 1 5.7104 -2.2267 -4.2450 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001645655095.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:21:47 Heat of formation + Delta-G solvation = -185.484582 kcal Electronic energy + Delta-G solvation = -27354.964781 eV Core-core repulsion = 23126.575801 eV Total energy + Delta-G solvation = -4228.388981 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 331.070 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.67580 -39.01712 -38.52888 -37.20888 -36.32195 -35.82502 -35.11686 -33.18368 -32.18718 -31.29423 -30.13027 -27.60130 -26.69495 -25.57471 -23.82231 -22.49780 -20.83758 -19.47515 -18.65671 -18.05400 -17.74341 -17.50641 -17.14238 -16.76281 -16.34582 -16.02125 -15.74966 -15.23144 -15.16685 -14.78961 -14.62073 -14.37192 -14.06554 -13.41610 -13.24651 -13.01017 -12.68026 -12.43253 -12.17661 -12.12488 -11.96367 -11.68110 -11.52919 -11.38225 -11.24161 -11.20374 -10.88629 -10.46576 -10.45261 -10.39339 -9.94581 -9.83497 -9.19139 -8.88199 -8.63023 -8.59446 -6.43158 -4.10097 0.40895 0.76574 0.96515 2.91965 3.04776 3.07266 3.17828 3.20323 3.24746 3.40934 3.63053 3.88043 3.92523 4.30107 4.57588 4.66659 4.92799 5.04056 5.05842 5.12896 5.19527 5.38565 5.43667 5.69636 5.73250 5.82887 5.97336 5.97584 6.07576 6.21545 6.33904 6.66929 7.02348 7.16116 7.36773 7.45153 7.91641 8.63278 9.04918 9.79761 10.74367 Molecular weight = 331.07amu Principal moments of inertia in cm(-1) A = 0.014395 B = 0.004687 C = 0.003872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1944.634945 B = 5972.937417 C = 7230.559981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.291 6.291 3 C 0.231 3.769 4 C -0.241 4.241 5 C 0.039 3.961 6 C -0.745 4.745 7 S 2.716 3.284 8 N -1.242 6.242 9 O -0.957 6.957 10 O -0.970 6.970 11 C 0.270 3.730 12 O -0.338 6.338 13 C 0.021 3.979 14 C -0.147 4.147 15 C 0.457 3.543 16 O -0.536 6.536 17 O -0.203 6.203 18 C -0.380 4.380 19 H 0.096 0.904 20 C 0.044 3.956 21 N -0.863 5.863 22 Si 0.944 3.056 23 H -0.273 1.273 24 H -0.278 1.278 25 H -0.266 1.266 26 H 0.062 0.938 27 H 0.107 0.893 28 H 0.060 0.940 29 H 0.146 0.854 30 H 0.154 0.846 31 H 0.419 0.581 32 H 0.418 0.582 33 H 0.099 0.901 34 H 0.067 0.933 35 H 0.087 0.913 36 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.551 12.118 6.125 15.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.202 6.202 3 C 0.182 3.818 4 C -0.261 4.261 5 C 0.019 3.981 6 C -0.832 4.832 7 S 2.803 3.197 8 N -0.915 5.915 9 O -0.947 6.947 10 O -0.960 6.960 11 C 0.224 3.776 12 O -0.255 6.255 13 C -0.072 4.072 14 C -0.150 4.150 15 C 0.302 3.698 16 O -0.432 6.432 17 O -0.110 6.110 18 C -0.456 4.456 19 H 0.114 0.886 20 C -0.161 4.161 21 N -0.499 5.499 22 Si 0.768 3.232 23 H -0.199 1.199 24 H -0.203 1.203 25 H -0.190 1.190 26 H 0.081 0.919 27 H 0.125 0.875 28 H 0.079 0.921 29 H 0.164 0.836 30 H 0.172 0.828 31 H 0.250 0.750 32 H 0.245 0.755 33 H 0.117 0.883 34 H 0.086 0.914 35 H 0.105 0.895 36 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -7.356 12.326 5.426 15.346 hybrid contribution 0.117 -1.525 0.528 1.618 sum -7.239 10.802 5.953 14.301 Atomic orbital electron populations 1.23250 0.77469 1.04888 1.01641 1.86248 1.22110 1.25915 1.85900 1.19064 0.90411 0.85023 0.87286 1.21240 1.00663 0.91512 1.12635 1.20658 0.91511 0.98406 0.87494 1.30621 1.04733 1.20075 1.27811 1.01022 0.73209 0.72747 0.72678 1.52942 1.43266 1.66865 1.28473 1.93548 1.59561 1.86319 1.55276 1.93576 1.58253 1.57724 1.86400 1.17647 0.83667 0.88900 0.87403 1.85841 1.13752 1.93747 1.32123 1.23614 0.97695 1.03830 0.82079 1.18971 0.90727 0.93580 1.11704 1.19966 0.81492 0.84312 0.84007 1.90673 1.55767 1.63661 1.33119 1.84009 1.59294 1.37667 1.29990 1.21256 1.29733 0.99612 0.95005 0.88607 1.25335 0.97489 0.99238 0.93995 1.69992 1.43295 1.39258 0.97393 0.85673 0.79162 0.80054 0.78314 1.19872 1.20278 1.19010 0.91895 0.87509 0.92092 0.83623 0.82837 0.75046 0.75533 0.88291 0.91421 0.89508 0.92014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.81 101.05 0.99 1.23 16 2 O -0.29 -5.22 9.95 -18.67 -0.19 -5.40 16 3 C 0.23 4.16 6.70 -38.68 -0.26 3.90 16 4 C -0.24 -3.21 9.02 -39.47 -0.36 -3.56 16 5 C 0.04 0.50 9.53 -39.56 -0.38 0.12 16 6 C -0.74 -11.10 5.92 -39.47 -0.23 -11.33 16 7 S 2.72 34.90 5.86 -107.50 -0.63 34.27 16 8 N -1.24 -11.54 9.52 60.35 0.57 -10.97 16 9 O -0.96 -14.71 14.34 -62.59 -0.90 -15.61 16 10 O -0.97 -13.71 16.95 -57.17 -0.97 -14.68 16 11 C 0.27 5.09 5.69 -38.69 -0.22 4.87 16 12 O -0.34 -6.47 9.07 -28.78 -0.26 -6.74 16 13 C 0.02 0.38 10.49 101.05 1.06 1.44 16 14 C -0.15 -3.17 5.77 -104.74 -0.60 -3.77 16 15 C 0.46 12.21 6.40 34.30 0.22 12.43 16 16 O -0.54 -15.46 16.36 -19.33 -0.32 -15.77 16 17 O -0.20 -5.99 9.51 -21.91 -0.21 -6.20 16 18 C -0.38 -11.38 9.65 30.93 0.30 -11.08 16 19 H 0.10 2.90 6.86 -52.49 -0.36 2.54 16 20 C 0.04 1.23 5.49 -17.52 -0.10 1.14 16 21 N -0.86 -25.17 13.67 55.48 0.76 -24.41 16 22 Si 0.94 21.33 29.55 -169.99 -5.02 16.30 16 23 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 24 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 25 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 26 H 0.06 0.57 7.67 -51.93 -0.40 0.17 16 27 H 0.11 0.99 8.14 -51.93 -0.42 0.57 16 28 H 0.06 0.51 7.65 -51.93 -0.40 0.11 16 29 H 0.15 1.34 6.28 -52.49 -0.33 1.01 16 30 H 0.15 1.51 7.30 -52.49 -0.38 1.13 16 31 H 0.42 3.02 8.96 -34.47 -0.31 2.71 16 32 H 0.42 3.19 8.96 -34.47 -0.31 2.88 16 33 H 0.10 1.58 8.14 -51.93 -0.42 1.15 16 34 H 0.07 1.44 7.90 -51.93 -0.41 1.03 16 35 H 0.09 1.50 5.47 -51.93 -0.28 1.21 16 36 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 LS Contribution 332.22 15.07 5.01 5.01 Total: -1.00 -39.27 332.22 -4.89 -44.16 By element: Atomic # 1 Polarization: 7.82 SS G_CDS: -3.16 Total: 4.66 kcal Atomic # 6 Polarization: -5.05 SS G_CDS: 0.42 Total: -4.63 kcal Atomic # 7 Polarization: -36.71 SS G_CDS: 1.33 Total: -35.38 kcal Atomic # 8 Polarization: -61.57 SS G_CDS: -2.84 Total: -64.40 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.30 kcal Atomic # 16 Polarization: 34.90 SS G_CDS: -0.63 Total: 34.27 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -39.27 -4.89 -44.16 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001645655095.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -141.322 kcal (2) G-P(sol) polarization free energy of solvation -39.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -180.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -185.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds