Wall clock time and date at job start Tue Mar 31 2020 16:21:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.35657 * 116.99861 * 2 1 4 4 C 1.38542 * 120.12521 * 0.26355 * 3 2 1 5 5 C 1.38238 * 120.24687 * 180.24855 * 4 3 2 6 6 C 1.38284 * 120.50029 * 359.74288 * 5 4 3 7 7 S 1.76203 * 119.87750 * 180.02562 * 6 5 4 8 8 N 1.65600 * 107.21413 * 114.97869 * 7 6 5 9 9 O 1.42101 * 106.40430 * 228.51921 * 7 6 5 10 10 O 1.42101 * 106.40164 * 1.44016 * 7 6 5 11 11 C 1.38502 * 120.24581 * 359.97438 * 6 5 4 12 12 O 1.35659 * 120.12740 * 180.02562 * 11 6 5 13 13 C 1.42901 * 116.99978 * 269.98145 * 12 11 6 14 14 C 1.40326 * 120.12770 * 179.97438 * 3 2 1 15 15 C 1.47044 * 120.24366 * 0.03207 * 14 3 2 16 16 O 1.21583 * 119.99880 * 269.71981 * 15 14 3 17 17 O 1.34807 * 120.00406 * 89.44200 * 15 14 3 18 18 C 1.34878 * 117.00389 * 180.27226 * 17 15 14 19 19 H 1.07993 * 119.99826 * 0.02562 * 18 17 15 20 20 C 1.38782 * 119.99739 * 179.97438 * 18 17 15 21 21 N 1.31431 * 120.00461 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 119.99480 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47099 * 90.00414 * 22 20 18 24 24 H 1.48499 * 109.46984 * 210.00198 * 22 20 18 25 25 H 1.48495 * 109.47185 * 330.00428 * 22 20 18 26 26 H 1.09004 * 109.47670 * 59.99651 * 1 2 3 27 27 H 1.09006 * 109.47064 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47085 * 299.99317 * 1 2 3 29 29 H 1.08000 * 119.88022 * 359.97001 * 4 3 2 30 30 H 1.07995 * 119.75400 * 179.71345 * 5 4 3 31 31 H 0.97010 * 119.99805 * 150.00741 * 8 7 6 32 32 H 0.96996 * 120.00379 * 329.99284 * 8 7 6 33 33 H 1.09002 * 109.47056 * 179.97438 * 13 12 11 34 34 H 1.08998 * 109.47369 * 299.99488 * 13 12 11 35 35 H 1.08996 * 109.47194 * 59.99810 * 13 12 11 36 36 H 0.97002 * 120.00116 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0448 1.2087 0.0000 4 6 1.2927 2.3723 0.0055 5 6 1.9176 3.6053 0.0003 6 6 3.2977 3.6927 -0.0050 7 16 4.0771 5.2730 -0.0109 8 7 4.8984 5.4197 1.4196 9 8 5.0605 5.2316 -1.0358 10 8 3.0326 6.2357 0.0255 11 6 4.0696 2.5427 -0.0047 12 8 5.4233 2.6313 -0.0095 13 6 6.0664 2.6701 -1.2850 14 6 3.4459 1.2853 0.0005 15 6 4.2548 0.0573 0.0004 16 8 4.5931 -0.4479 1.0533 17 8 4.6166 -0.5115 -1.1670 18 6 5.3533 -1.6391 -1.0965 19 1 5.6265 -2.0463 -0.1343 20 6 5.7592 -2.2766 -2.2605 21 7 5.4263 -1.7813 -3.4315 22 14 6.7789 -3.8387 -2.1628 23 1 5.8765 -5.0174 -2.1271 24 1 7.6630 -3.9279 -3.3526 25 1 7.6079 -3.8124 -0.9310 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5137 0.8900 29 1 0.2142 2.3158 0.0093 30 1 1.3236 4.5072 0.0000 31 1 5.7048 5.9572 1.4630 32 1 4.5730 4.9685 2.2142 33 1 7.1452 2.7415 -1.1459 34 1 5.8305 1.7613 -1.8386 35 1 5.7142 3.5374 -1.8433 36 1 5.7104 -2.2267 -4.2450 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001645655095.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:21:47 Heat of formation + Delta-G solvation = -219.013306 kcal Electronic energy + Delta-G solvation = -27356.418696 eV Core-core repulsion = 23126.575801 eV Total energy + Delta-G solvation = -4229.842896 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 331.070 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.08862 -40.63089 -40.24022 -38.33931 -37.59294 -37.26738 -36.93420 -34.37645 -34.01929 -32.69753 -31.37144 -28.61206 -28.23736 -27.54680 -25.37153 -23.78560 -22.48667 -20.58530 -20.10108 -19.92764 -19.20048 -18.73198 -18.41934 -18.20941 -17.64007 -17.25963 -17.01819 -16.67187 -16.55055 -16.26958 -16.21684 -16.10391 -15.83307 -14.75063 -14.73269 -14.34833 -13.92447 -13.78349 -13.65718 -13.24300 -13.20801 -13.17983 -13.09416 -12.81257 -12.48884 -12.46115 -12.36879 -12.23246 -12.09993 -12.07591 -11.47306 -11.29373 -11.12127 -10.75056 -10.20660 -9.92221 -8.59566 -6.39868 -0.67326 -0.42791 -0.34572 1.16457 1.30459 1.47988 1.51253 1.74058 1.90365 2.09466 2.14054 2.52860 2.58098 2.66962 2.90730 3.40575 3.58484 3.81404 4.02483 4.09333 4.22325 4.32845 4.33451 4.39095 4.54411 4.58509 4.63320 4.72816 4.81163 4.87055 5.09255 5.14616 5.30143 5.74782 5.98851 6.05876 6.37815 6.47803 6.83705 7.63261 8.60703 Molecular weight = 331.07amu Principal moments of inertia in cm(-1) A = 0.014395 B = 0.004687 C = 0.003872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1944.634945 B = 5972.937417 C = 7230.559981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.008 3.992 2 O -0.335 6.335 3 C 0.220 3.780 4 C -0.220 4.220 5 C 0.053 3.947 6 C -0.742 4.742 7 S 2.741 3.259 8 N -1.229 6.229 9 O -0.983 6.983 10 O -0.974 6.974 11 C 0.256 3.744 12 O -0.348 6.348 13 C 0.024 3.976 14 C -0.203 4.203 15 C 0.462 3.538 16 O -0.572 6.572 17 O -0.229 6.229 18 C -0.423 4.423 19 H 0.079 0.921 20 C 0.001 3.999 21 N -0.898 5.898 22 Si 1.019 2.981 23 H -0.258 1.258 24 H -0.256 1.256 25 H -0.264 1.264 26 H 0.085 0.915 27 H 0.116 0.884 28 H 0.092 0.908 29 H 0.197 0.803 30 H 0.198 0.802 31 H 0.431 0.569 32 H 0.427 0.573 33 H 0.119 0.881 34 H 0.026 0.974 35 H 0.100 0.900 36 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.173 13.611 6.400 17.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 O -0.247 6.247 3 C 0.171 3.829 4 C -0.238 4.238 5 C 0.035 3.965 6 C -0.828 4.828 7 S 2.826 3.174 8 N -0.908 5.908 9 O -0.973 6.973 10 O -0.963 6.963 11 C 0.210 3.790 12 O -0.265 6.265 13 C -0.068 4.068 14 C -0.206 4.206 15 C 0.309 3.691 16 O -0.470 6.470 17 O -0.137 6.137 18 C -0.499 4.499 19 H 0.097 0.903 20 C -0.200 4.200 21 N -0.534 5.534 22 Si 0.837 3.163 23 H -0.183 1.183 24 H -0.180 1.180 25 H -0.188 1.188 26 H 0.104 0.896 27 H 0.134 0.866 28 H 0.110 0.890 29 H 0.214 0.786 30 H 0.215 0.785 31 H 0.264 0.736 32 H 0.257 0.743 33 H 0.137 0.863 34 H 0.044 0.956 35 H 0.118 0.882 36 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -9.012 13.825 5.704 17.461 hybrid contribution 0.487 -1.878 0.491 2.002 sum -8.525 11.947 6.196 15.931 Atomic orbital electron populations 1.23709 0.74047 1.06573 1.04192 1.86192 1.25820 1.26743 1.85921 1.19275 0.89315 0.86725 0.87552 1.21738 1.02709 0.89578 1.09819 1.21303 0.90835 0.99886 0.84518 1.30946 1.05724 1.19416 1.26708 1.00310 0.72704 0.71612 0.72736 1.52636 1.43647 1.66908 1.27644 1.93503 1.60271 1.86351 1.57151 1.93574 1.58733 1.57253 1.86788 1.17827 0.83538 0.89200 0.88479 1.85812 1.14687 1.93771 1.32217 1.23607 0.99045 1.02177 0.82007 1.19073 0.92381 0.92073 1.17098 1.20934 0.80303 0.85117 0.82718 1.90600 1.57183 1.65271 1.33981 1.84038 1.59947 1.38003 1.31715 1.21450 1.32107 1.01044 0.95258 0.90314 1.26568 0.97883 1.02600 0.92905 1.70074 1.44021 1.41012 0.98318 0.84629 0.77580 0.75085 0.79042 1.18269 1.17960 1.18796 0.89638 0.86590 0.88996 0.78615 0.78512 0.73604 0.74304 0.86265 0.95550 0.88171 0.90970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.15 9.81 113.37 1.11 1.26 16 2 O -0.33 -12.13 9.95 -89.72 -0.89 -13.02 16 3 C 0.22 7.89 6.70 22.85 0.15 8.04 16 4 C -0.22 -5.11 9.02 22.34 0.20 -4.90 16 5 C 0.05 1.17 9.53 22.28 0.21 1.38 16 6 C -0.74 -20.86 5.92 22.34 0.13 -20.73 16 7 S 2.74 64.42 5.86 -56.49 -0.33 64.09 16 8 N -1.23 -20.23 9.52 37.02 0.35 -19.87 16 9 O -0.98 -29.00 14.34 -122.82 -1.76 -30.76 16 10 O -0.97 -24.14 16.95 -128.00 -2.17 -26.31 16 11 C 0.26 9.81 5.69 22.85 0.13 9.94 16 12 O -0.35 -13.85 9.07 -80.09 -0.73 -14.57 16 13 C 0.02 0.94 10.49 113.37 1.19 2.13 16 14 C -0.20 -9.16 5.77 -19.94 -0.12 -9.28 16 15 C 0.46 26.45 6.40 70.13 0.45 26.90 16 16 O -0.57 -35.44 16.36 19.57 0.32 -35.12 16 17 O -0.23 -14.58 9.51 10.33 0.10 -14.48 16 18 C -0.42 -26.95 9.65 67.95 0.66 -26.29 16 19 H 0.08 5.12 6.86 -2.91 -0.02 5.10 16 20 C 0.00 0.08 5.49 84.88 0.47 0.54 16 21 N -0.90 -54.00 13.67 21.63 0.30 -53.71 16 22 Si 1.02 44.36 29.55 68.60 2.03 46.39 16 23 H -0.26 -10.59 7.11 99.48 0.71 -9.88 16 24 H -0.26 -10.18 7.11 99.48 0.71 -9.47 16 25 H -0.26 -11.30 7.11 99.48 0.71 -10.59 16 26 H 0.09 1.27 7.67 -2.39 -0.02 1.25 16 27 H 0.12 2.00 8.14 -2.38 -0.02 1.98 16 28 H 0.09 1.21 7.65 -2.39 -0.02 1.19 16 29 H 0.20 2.48 6.28 -2.91 -0.02 2.47 16 30 H 0.20 2.69 7.30 -2.91 -0.02 2.67 16 31 H 0.43 5.29 8.96 -96.73 -0.87 4.42 16 32 H 0.43 5.58 8.96 -96.75 -0.87 4.72 16 33 H 0.12 3.95 8.14 -2.39 -0.02 3.93 16 34 H 0.03 1.21 7.90 -2.39 -0.02 1.19 16 35 H 0.10 3.55 5.47 -2.39 -0.01 3.54 16 36 H 0.28 15.21 8.31 -92.71 -0.77 14.44 16 Total: -1.00 -92.68 332.22 1.25 -91.43 By element: Atomic # 1 Polarization: 17.50 SS G_CDS: -0.55 Total: 16.95 kcal Atomic # 6 Polarization: -15.60 SS G_CDS: 4.59 Total: -11.01 kcal Atomic # 7 Polarization: -74.23 SS G_CDS: 0.65 Total: -73.58 kcal Atomic # 8 Polarization: -129.14 SS G_CDS: -5.13 Total: -134.27 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.39 kcal Atomic # 16 Polarization: 64.42 SS G_CDS: -0.33 Total: 64.09 kcal Total: -92.68 1.25 -91.43 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001645655095.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -127.584 kcal (2) G-P(sol) polarization free energy of solvation -92.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -220.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -219.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds