Wall clock time and date at job start Tue Mar 31 2020 16:14:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47193 * 179.97438 * 2 1 4 4 N 1.46503 * 109.47138 * 259.49544 * 3 2 1 5 5 C 1.36937 * 119.99673 * 273.25920 * 4 3 2 6 6 H 1.07999 * 120.00217 * 186.68931 * 5 4 3 7 7 C 1.38811 * 120.00342 * 6.69790 * 5 4 3 8 8 N 1.31617 * 120.00074 * 25.18332 * 7 5 4 9 9 Si 1.86803 * 120.00205 * 205.18445 * 7 5 4 10 10 H 1.48501 * 109.46775 * 59.99757 * 9 7 5 11 11 H 1.48492 * 109.47208 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.47299 * 300.00087 * 9 7 5 13 13 S 1.65596 * 120.00109 * 93.26577 * 4 3 2 14 14 O 1.42105 * 106.40491 * 156.46217 * 13 4 3 15 15 O 1.42094 * 106.40256 * 23.53342 * 13 4 3 16 16 C 1.76204 * 107.21244 * 269.99789 * 13 4 3 17 17 C 1.38296 * 119.97177 * 269.97509 * 16 13 4 18 18 C 1.38248 * 120.10968 * 180.02562 * 17 16 13 19 19 C 1.38169 * 120.05483 * 359.68453 * 18 17 16 20 20 C 1.38713 * 119.94145 * 0.61457 * 19 18 17 21 21 O 1.35902 * 120.05214 * 179.67889 * 20 19 18 22 22 C 1.42904 * 117.00214 * 359.72910 * 21 20 19 23 23 F 1.39905 * 109.46898 * 59.99689 * 22 21 20 24 24 F 1.39900 * 109.46747 * 299.99867 * 22 21 20 25 25 C 1.38120 * 119.97235 * 90.00549 * 16 13 4 26 26 H 4.40640 * 5.51415 * 179.97438 * 4 1 2 27 27 H 1.08999 * 109.47388 * 139.49598 * 3 2 1 28 28 H 1.08997 * 109.47537 * 19.49605 * 3 2 1 29 29 H 0.97000 * 120.00279 * 180.02562 * 8 7 5 30 30 H 1.07994 * 119.94507 * 0.02562 * 17 16 13 31 31 H 1.08000 * 119.96940 * 179.97438 * 18 17 16 32 32 H 1.08001 * 120.02694 * 180.29920 * 19 18 17 33 33 H 1.08997 * 109.46889 * 179.97438 * 22 21 20 34 34 H 1.07997 * 120.03079 * 0.02562 * 25 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1341 0.2527 1.3581 5 6 3.2982 1.5387 1.7990 6 1 3.7586 1.7263 2.7577 7 6 2.8726 2.6013 1.0138 8 7 1.9098 2.4251 0.1337 9 14 3.6661 4.2815 1.2060 10 1 5.1186 4.1791 0.9144 11 1 3.0377 5.2370 0.2588 12 1 3.4733 4.7637 2.5972 13 16 3.4877 -1.0175 2.3599 14 8 4.4127 -0.5259 3.3202 15 8 3.7589 -2.1294 1.5177 16 6 2.0148 -1.4103 3.2436 17 6 1.7509 -0.7962 4.4543 18 6 0.5964 -1.1026 5.1503 19 6 -0.3000 -2.0188 4.6345 20 6 -0.0345 -2.6408 3.4234 21 8 -0.9115 -3.5472 2.9171 22 6 -2.0842 -3.8161 3.6882 23 9 -2.8162 -2.6349 3.8509 24 9 -1.7137 -4.3117 4.9429 25 6 1.1251 -2.3318 2.7269 26 1 -1.0501 0.0002 -0.0001 27 1 3.0089 0.7822 -0.6675 28 1 3.0097 -0.9679 -0.3430 29 1 1.6126 3.1675 -0.4152 30 1 2.4478 -0.0760 4.8566 31 1 0.3927 -0.6219 6.0957 32 1 -1.2042 -2.2543 5.1763 33 1 -2.6971 -4.5548 3.1718 34 1 1.3320 -2.8119 1.7819 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001668774083.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:14:09 Heat of formation + Delta-G solvation = -111.811440 kcal Electronic energy + Delta-G solvation = -26715.666663 eV Core-core repulsion = 22379.384874 eV Total energy + Delta-G solvation = -4336.281789 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 331.052 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -49.43590 -47.42795 -39.67765 -37.13528 -36.39017 -35.91238 -34.48966 -32.09739 -31.18993 -30.78818 -29.98147 -26.64910 -26.12022 -23.92138 -22.85077 -22.20746 -19.34802 -18.49100 -18.24730 -17.98976 -17.84832 -16.86571 -16.60146 -16.33330 -15.82124 -14.97609 -14.72036 -14.68327 -14.57194 -14.24239 -13.97598 -13.74230 -13.62675 -13.37901 -13.34058 -12.86703 -12.65402 -12.50585 -11.90879 -11.79138 -11.48612 -11.33510 -11.13599 -11.02017 -10.87053 -10.76242 -10.53392 -10.35550 -9.98181 -9.64980 -9.28351 -8.97988 -8.75271 -8.38355 -8.16750 -6.67878 -4.03043 1.24880 1.66318 1.68002 2.59946 3.05448 3.10545 3.17530 3.37392 3.68262 3.91450 3.95550 4.15231 4.20069 4.52611 4.54923 4.63242 4.97531 5.01041 5.13375 5.35604 5.53516 5.57171 5.73113 5.91156 6.18747 6.26258 6.39779 6.58340 6.65278 6.68691 6.75299 6.95043 7.09564 7.19617 7.35272 8.08178 8.47896 8.87887 8.91387 10.22904 Molecular weight = 331.05amu Principal moments of inertia in cm(-1) A = 0.016239 B = 0.004564 C = 0.004308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1723.840606 B = 6133.910748 C = 6497.969422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.262 4.262 2 C -0.114 4.114 3 C 0.233 3.767 4 N -0.789 5.789 5 C -0.238 4.238 6 H 0.125 0.875 7 C 0.028 3.972 8 N -0.812 5.812 9 Si 0.934 3.066 10 H -0.265 1.265 11 H -0.281 1.281 12 H -0.268 1.268 13 S 2.521 3.479 14 O -0.980 6.980 15 O -0.995 6.995 16 C -0.622 4.622 17 C -0.048 4.048 18 C -0.111 4.111 19 C -0.161 4.161 20 C 0.074 3.926 21 O -0.319 6.319 22 C 0.410 3.590 23 F -0.201 7.201 24 F -0.203 7.203 25 C -0.038 4.038 26 H 0.195 0.805 27 H 0.117 0.883 28 H 0.083 0.917 29 H 0.278 0.722 30 H 0.137 0.863 31 H 0.127 0.873 32 H 0.129 0.871 33 H 0.179 0.821 34 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.444 -5.547 2.915 9.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.281 4.281 2 C -0.117 4.117 3 C 0.108 3.892 4 N -0.610 5.610 5 C -0.387 4.387 6 H 0.142 0.858 7 C -0.185 4.185 8 N -0.451 5.451 9 Si 0.758 3.242 10 H -0.190 1.190 11 H -0.206 1.206 12 H -0.192 1.192 13 S 2.618 3.382 14 O -0.970 6.970 15 O -0.985 6.985 16 C -0.698 4.698 17 C -0.068 4.068 18 C -0.130 4.130 19 C -0.180 4.180 20 C 0.031 3.969 21 O -0.237 6.237 22 C 0.319 3.681 23 F -0.182 7.182 24 F -0.184 7.184 25 C -0.058 4.058 26 H 0.212 0.788 27 H 0.134 0.866 28 H 0.101 0.899 29 H 0.089 0.911 30 H 0.155 0.845 31 H 0.145 0.855 32 H 0.146 0.854 33 H 0.195 0.805 34 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -6.748 -6.298 2.854 9.661 hybrid contribution -1.432 0.984 0.771 1.901 sum -8.180 -5.313 3.625 10.406 Atomic orbital electron populations 1.24176 0.95269 1.07001 1.01650 1.23339 0.94516 0.94944 0.98896 1.18536 0.83949 1.01468 0.85266 1.55591 1.71128 1.17709 1.16600 1.20200 1.30418 0.80531 1.07568 0.85761 1.25667 0.95115 1.00559 0.97185 1.70236 1.20837 1.33275 1.20707 0.85859 0.79864 0.79582 0.78881 1.19026 1.20580 1.19243 1.12353 0.78575 0.74303 0.72937 1.93353 1.62037 1.79746 1.61858 1.93344 1.85716 1.53190 1.66213 1.32628 1.25606 1.03437 1.08122 1.20884 0.96206 0.96947 0.92733 1.21036 0.94308 0.97605 1.00059 1.21526 1.01220 0.99688 0.95585 1.18936 0.91102 0.92304 0.94545 1.86609 1.30931 1.58734 1.47473 1.23330 0.82771 0.83475 0.78481 1.93095 1.77702 1.51815 1.95624 1.93082 1.92033 1.87548 1.45777 1.20078 0.90252 0.96119 0.99337 0.78812 0.86552 0.89891 0.91059 0.84513 0.85523 0.85379 0.80487 0.84285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 25. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -5.44 19.25 29.55 0.57 -4.87 16 2 C -0.11 -2.52 11.25 -37.13 -0.42 -2.94 16 3 C 0.23 5.08 5.45 -6.83 -0.04 5.04 16 4 N -0.79 -18.24 2.88 -62.78 -0.18 -18.42 16 5 C -0.24 -5.59 9.48 -15.06 -0.14 -5.73 16 6 H 0.12 2.87 7.22 -52.49 -0.38 2.49 16 7 C 0.03 0.63 4.92 -17.43 -0.09 0.55 16 8 N -0.81 -18.68 8.96 55.49 0.50 -18.19 16 9 Si 0.93 17.73 29.62 -169.99 -5.04 12.70 16 10 H -0.27 -5.03 7.11 56.52 0.40 -4.63 16 11 H -0.28 -5.29 7.11 56.52 0.40 -4.89 16 12 H -0.27 -5.07 7.11 56.52 0.40 -4.67 16 13 S 2.52 58.22 5.65 -107.50 -0.61 57.61 16 14 O -0.98 -24.31 16.06 -57.17 -0.92 -25.23 16 15 O -0.99 -24.05 15.85 -57.17 -0.91 -24.96 16 16 C -0.62 -13.32 5.97 -39.60 -0.24 -13.56 16 17 C -0.05 -0.96 9.52 -39.56 -0.38 -1.33 16 18 C -0.11 -1.93 10.04 -39.60 -0.40 -2.32 16 19 C -0.16 -2.77 8.26 -39.43 -0.33 -3.10 16 20 C 0.07 1.36 6.48 -39.22 -0.25 1.10 16 21 O -0.32 -4.93 10.43 -19.43 -0.20 -5.14 16 22 C 0.41 4.59 5.98 101.05 0.60 5.19 16 23 F -0.20 -2.57 15.57 2.25 0.04 -2.54 16 24 F -0.20 -2.50 15.60 2.25 0.04 -2.47 16 25 C -0.04 -0.78 9.46 -39.43 -0.37 -1.15 16 26 H 0.19 3.41 7.80 -54.09 -0.42 2.99 16 27 H 0.12 2.53 6.41 -51.93 -0.33 2.19 16 28 H 0.08 1.69 6.95 -51.93 -0.36 1.33 16 29 H 0.28 6.07 8.31 -40.82 -0.34 5.74 16 30 H 0.14 2.58 7.61 -52.49 -0.40 2.18 16 31 H 0.13 1.76 8.06 -52.49 -0.42 1.34 16 32 H 0.13 1.94 5.10 -52.49 -0.27 1.67 16 33 H 0.18 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.14 2.79 7.61 -52.49 -0.40 2.39 16 LS Contribution 321.22 15.07 4.84 4.84 Total: -1.00 -29.73 321.22 -6.46 -36.19 By element: Atomic # 1 Polarization: 11.26 SS G_CDS: -2.54 Total: 8.71 kcal Atomic # 6 Polarization: -21.65 SS G_CDS: -1.47 Total: -23.12 kcal Atomic # 7 Polarization: -36.92 SS G_CDS: 0.32 Total: -36.60 kcal Atomic # 8 Polarization: -53.30 SS G_CDS: -2.03 Total: -55.33 kcal Atomic # 9 Polarization: -5.07 SS G_CDS: 0.07 Total: -5.00 kcal Atomic # 14 Polarization: 17.73 SS G_CDS: -5.04 Total: 12.70 kcal Atomic # 16 Polarization: 58.22 SS G_CDS: -0.61 Total: 57.61 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -29.73 -6.46 -36.19 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001668774083.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.621 kcal (2) G-P(sol) polarization free energy of solvation -29.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds