Wall clock time and date at job start Tue Mar 31 2020 16:14:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47193 * 179.97438 * 2 1 4 4 N 1.46503 * 109.47138 * 259.49544 * 3 2 1 5 5 C 1.36937 * 119.99673 * 273.25920 * 4 3 2 6 6 H 1.07999 * 120.00217 * 186.68931 * 5 4 3 7 7 C 1.38811 * 120.00342 * 6.69790 * 5 4 3 8 8 N 1.31617 * 120.00074 * 25.18332 * 7 5 4 9 9 Si 1.86803 * 120.00205 * 205.18445 * 7 5 4 10 10 H 1.48501 * 109.46775 * 59.99757 * 9 7 5 11 11 H 1.48492 * 109.47208 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.47299 * 300.00087 * 9 7 5 13 13 S 1.65596 * 120.00109 * 93.26577 * 4 3 2 14 14 O 1.42105 * 106.40491 * 156.46217 * 13 4 3 15 15 O 1.42094 * 106.40256 * 23.53342 * 13 4 3 16 16 C 1.76204 * 107.21244 * 269.99789 * 13 4 3 17 17 C 1.38296 * 119.97177 * 269.97509 * 16 13 4 18 18 C 1.38248 * 120.10968 * 180.02562 * 17 16 13 19 19 C 1.38169 * 120.05483 * 359.68453 * 18 17 16 20 20 C 1.38713 * 119.94145 * 0.61457 * 19 18 17 21 21 O 1.35902 * 120.05214 * 179.67889 * 20 19 18 22 22 C 1.42904 * 117.00214 * 359.72910 * 21 20 19 23 23 F 1.39905 * 109.46898 * 59.99689 * 22 21 20 24 24 F 1.39900 * 109.46747 * 299.99867 * 22 21 20 25 25 C 1.38120 * 119.97235 * 90.00549 * 16 13 4 26 26 H 4.40640 * 5.51415 * 179.97438 * 4 1 2 27 27 H 1.08999 * 109.47388 * 139.49598 * 3 2 1 28 28 H 1.08997 * 109.47537 * 19.49605 * 3 2 1 29 29 H 0.97000 * 120.00279 * 180.02562 * 8 7 5 30 30 H 1.07994 * 119.94507 * 0.02562 * 17 16 13 31 31 H 1.08000 * 119.96940 * 179.97438 * 18 17 16 32 32 H 1.08001 * 120.02694 * 180.29920 * 19 18 17 33 33 H 1.08997 * 109.46889 * 179.97438 * 22 21 20 34 34 H 1.07997 * 120.03079 * 0.02562 * 25 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1341 0.2527 1.3581 5 6 3.2982 1.5387 1.7990 6 1 3.7586 1.7263 2.7577 7 6 2.8726 2.6013 1.0138 8 7 1.9098 2.4251 0.1337 9 14 3.6661 4.2815 1.2060 10 1 5.1186 4.1791 0.9144 11 1 3.0377 5.2370 0.2588 12 1 3.4733 4.7637 2.5972 13 16 3.4877 -1.0175 2.3599 14 8 4.4127 -0.5259 3.3202 15 8 3.7589 -2.1294 1.5177 16 6 2.0148 -1.4103 3.2436 17 6 1.7509 -0.7962 4.4543 18 6 0.5964 -1.1026 5.1503 19 6 -0.3000 -2.0188 4.6345 20 6 -0.0345 -2.6408 3.4234 21 8 -0.9115 -3.5472 2.9171 22 6 -2.0842 -3.8161 3.6882 23 9 -2.8162 -2.6349 3.8509 24 9 -1.7137 -4.3117 4.9429 25 6 1.1251 -2.3318 2.7269 26 1 -1.0501 0.0002 -0.0001 27 1 3.0089 0.7822 -0.6675 28 1 3.0097 -0.9679 -0.3430 29 1 1.6126 3.1675 -0.4152 30 1 2.4478 -0.0760 4.8566 31 1 0.3927 -0.6219 6.0957 32 1 -1.2042 -2.2543 5.1763 33 1 -2.6971 -4.5548 3.1718 34 1 1.3320 -2.8119 1.7819 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001668774083.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:14:08 Heat of formation + Delta-G solvation = -130.581657 kcal Electronic energy + Delta-G solvation = -26716.480601 eV Core-core repulsion = 22379.384874 eV Total energy + Delta-G solvation = -4337.095727 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 331.052 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -50.37005 -48.36491 -41.00203 -38.45925 -38.11794 -37.79818 -36.39669 -33.80795 -32.90059 -32.25611 -31.37507 -28.36767 -27.12823 -25.67143 -24.29794 -23.57332 -20.72109 -20.15932 -19.60203 -19.20152 -18.94638 -18.55287 -18.23155 -17.86585 -17.25011 -16.58983 -16.31118 -16.12203 -15.73963 -15.72768 -15.15014 -15.04499 -15.01214 -14.88913 -14.70579 -14.22960 -14.08537 -13.74660 -13.56426 -13.23284 -13.09855 -12.81676 -12.76551 -12.66545 -12.58770 -12.49033 -12.30106 -12.00527 -11.66069 -11.30302 -10.96767 -10.61562 -10.30346 -10.10164 -9.59721 -8.38171 -5.82182 -0.31686 -0.03655 0.21959 1.52300 1.55808 1.58479 1.67113 2.02424 2.34333 2.41267 2.47076 2.47789 2.80886 2.90592 3.24472 3.43421 3.64247 3.67808 3.72035 3.81368 3.94697 4.08606 4.22318 4.42494 4.55085 4.74637 4.95802 4.96149 5.13253 5.20083 5.24159 5.32887 5.41256 5.50435 5.96573 6.32783 6.73180 7.14756 7.22748 8.52715 Molecular weight = 331.05amu Principal moments of inertia in cm(-1) A = 0.016239 B = 0.004564 C = 0.004308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1723.840606 B = 6133.910748 C = 6497.969422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.253 4.253 2 C -0.144 4.144 3 C 0.233 3.767 4 N -0.798 5.798 5 C -0.267 4.267 6 H 0.119 0.881 7 C 0.002 3.998 8 N -0.830 5.830 9 Si 0.992 3.008 10 H -0.265 1.265 11 H -0.275 1.275 12 H -0.265 1.265 13 S 2.533 3.467 14 O -1.004 7.004 15 O -1.014 7.014 16 C -0.641 4.641 17 C -0.069 4.069 18 C -0.103 4.103 19 C -0.159 4.159 20 C 0.078 3.922 21 O -0.329 6.329 22 C 0.404 3.596 23 F -0.209 7.209 24 F -0.208 7.208 25 C -0.061 4.061 26 H 0.223 0.777 27 H 0.113 0.887 28 H 0.089 0.911 29 H 0.282 0.718 30 H 0.137 0.863 31 H 0.165 0.835 32 H 0.153 0.847 33 H 0.240 0.760 34 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.490 -5.494 3.722 11.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.272 4.272 2 C -0.147 4.147 3 C 0.108 3.892 4 N -0.619 5.619 5 C -0.415 4.415 6 H 0.137 0.863 7 C -0.210 4.210 8 N -0.468 5.468 9 Si 0.814 3.186 10 H -0.190 1.190 11 H -0.199 1.199 12 H -0.190 1.190 13 S 2.634 3.366 14 O -0.994 6.994 15 O -1.003 7.003 16 C -0.721 4.721 17 C -0.088 4.088 18 C -0.122 4.122 19 C -0.178 4.178 20 C 0.034 3.966 21 O -0.247 6.247 22 C 0.315 3.685 23 F -0.191 7.191 24 F -0.190 7.190 25 C -0.081 4.081 26 H 0.240 0.760 27 H 0.131 0.869 28 H 0.106 0.894 29 H 0.092 0.908 30 H 0.155 0.845 31 H 0.182 0.818 32 H 0.170 0.830 33 H 0.255 0.745 34 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -8.782 -6.243 3.638 11.372 hybrid contribution -0.946 0.835 0.582 1.390 sum -9.728 -5.408 4.220 11.903 Atomic orbital electron populations 1.24888 0.96099 1.05807 1.00378 1.23544 0.95008 0.96072 1.00078 1.18523 0.84402 1.01554 0.84714 1.55437 1.72006 1.17490 1.16962 1.20338 1.31978 0.81063 1.08117 0.86318 1.26340 0.95067 1.03022 0.96558 1.70306 1.21331 1.34128 1.21003 0.84993 0.78890 0.75854 0.78854 1.18972 1.19950 1.19001 1.11583 0.78515 0.73890 0.72630 1.93309 1.63329 1.80180 1.62549 1.93304 1.86296 1.53895 1.66849 1.32236 1.25312 1.05226 1.09288 1.21058 0.97625 0.97444 0.92709 1.21442 0.92885 0.96913 1.00937 1.21876 1.01849 0.98915 0.95123 1.18960 0.90880 0.92326 0.94436 1.86614 1.31798 1.57696 1.48575 1.24364 0.81597 0.84071 0.78449 1.93077 1.77602 1.52748 1.95657 1.93070 1.92068 1.87484 1.46412 1.20068 0.91593 0.96756 0.99683 0.75988 0.86923 0.89362 0.90781 0.84481 0.81773 0.82965 0.74455 0.85077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 29. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -10.29 19.25 74.32 1.43 -8.86 16 2 C -0.14 -6.41 11.25 31.12 0.35 -6.06 16 3 C 0.23 10.44 5.45 84.57 0.46 10.90 16 4 N -0.80 -37.90 2.88 -352.52 -1.02 -38.91 16 5 C -0.27 -12.79 9.48 84.03 0.80 -11.99 16 6 H 0.12 5.66 7.22 -2.91 -0.02 5.64 16 7 C 0.00 0.08 4.92 84.86 0.42 0.50 16 8 N -0.83 -38.15 8.96 21.65 0.19 -37.95 16 9 Si 0.99 36.03 29.62 68.60 2.03 38.06 16 10 H -0.26 -9.55 7.11 99.48 0.71 -8.84 16 11 H -0.27 -9.64 7.11 99.48 0.71 -8.93 16 12 H -0.27 -9.49 7.11 99.48 0.71 -8.78 16 13 S 2.53 120.75 5.65 -56.49 -0.32 120.43 16 14 O -1.00 -51.39 16.06 -128.00 -2.06 -53.44 16 15 O -1.01 -50.68 15.85 -128.00 -2.03 -52.71 16 16 C -0.64 -27.85 5.97 22.26 0.13 -27.72 16 17 C -0.07 -2.71 9.52 22.29 0.21 -2.50 16 18 C -0.10 -3.35 10.04 22.26 0.22 -3.13 16 19 C -0.16 -5.07 8.26 22.37 0.18 -4.89 16 20 C 0.08 2.74 6.48 22.51 0.15 2.88 16 21 O -0.33 -9.40 10.43 -92.44 -0.96 -10.36 16 22 C 0.40 7.59 5.98 113.37 0.68 8.27 16 23 F -0.21 -4.65 15.57 44.97 0.70 -3.95 16 24 F -0.21 -4.47 15.60 44.97 0.70 -3.77 16 25 C -0.06 -2.51 9.46 22.36 0.21 -2.30 16 26 H 0.22 7.35 7.80 -4.41 -0.03 7.32 16 27 H 0.11 5.05 6.41 -2.39 -0.02 5.03 16 28 H 0.09 3.74 6.95 -2.39 -0.02 3.72 16 29 H 0.28 12.17 8.31 -92.71 -0.77 11.39 16 30 H 0.14 5.23 7.61 -2.91 -0.02 5.21 16 31 H 0.16 3.99 8.06 -2.91 -0.02 3.97 16 32 H 0.15 4.08 5.10 -2.91 -0.01 4.06 16 33 H 0.24 1.50 8.14 -2.39 -0.02 1.49 16 34 H 0.13 5.42 7.61 -2.91 -0.02 5.40 16 Total: -1.00 -64.48 321.22 3.65 -60.83 By element: Atomic # 1 Polarization: 25.51 SS G_CDS: 1.16 Total: 26.67 kcal Atomic # 6 Polarization: -50.14 SS G_CDS: 5.24 Total: -44.90 kcal Atomic # 7 Polarization: -76.04 SS G_CDS: -0.82 Total: -76.86 kcal Atomic # 8 Polarization: -111.46 SS G_CDS: -5.05 Total: -116.51 kcal Atomic # 9 Polarization: -9.12 SS G_CDS: 1.40 Total: -7.72 kcal Atomic # 14 Polarization: 36.03 SS G_CDS: 2.03 Total: 38.06 kcal Atomic # 16 Polarization: 120.75 SS G_CDS: -0.32 Total: 120.43 kcal Total: -64.48 3.65 -60.83 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001668774083.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.753 kcal (2) G-P(sol) polarization free energy of solvation -64.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds