Wall clock time and date at job start Tue Mar 31 2020 16:47:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86795 * 120.00059 * 2 1 4 4 H 1.48503 * 109.47354 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47454 * 300.00612 * 3 2 1 6 6 H 1.48509 * 109.47090 * 60.00304 * 3 2 1 7 7 C 1.38814 * 119.99912 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99718 * 179.97438 * 7 2 1 9 9 N 1.36933 * 119.99965 * 359.97438 * 7 2 1 10 10 C 1.46508 * 119.99761 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.46723 * 179.97438 * 10 9 7 12 12 H 1.09005 * 109.51409 * 60.10296 * 11 10 9 13 13 C 1.53718 * 109.48240 * 180.36306 * 11 10 9 14 14 N 1.47151 * 108.16158 * 172.40381 * 13 11 10 15 15 C 1.34778 * 120.98419 * 129.43322 * 14 13 11 16 16 O 1.21637 * 119.99754 * 353.83450 * 15 14 13 17 17 C 1.47146 * 120.00091 * 173.83951 * 15 14 13 18 18 N 1.30560 * 125.52895 * 145.91336 * 17 15 14 19 19 C 1.30661 * 115.93130 * 180.02562 * 18 17 15 20 20 C 1.34443 * 115.74217 * 359.97438 * 19 18 17 21 21 Cl 1.73602 * 125.46580 * 180.02562 * 20 19 18 22 22 S 1.71073 * 109.06998 * 359.73139 * 20 19 18 23 23 C 1.47147 * 118.03224 * 309.15211 * 14 13 11 24 24 C 1.53303 * 108.38574 * 50.79090 * 23 14 13 25 25 O 1.42957 * 109.21922 * 307.69494 * 24 23 14 26 26 H 0.96994 * 119.99912 * 359.97438 * 1 2 3 27 27 H 0.96996 * 120.00481 * 359.97438 * 9 7 2 28 28 H 1.09003 * 109.46839 * 59.99765 * 10 9 7 29 29 H 1.08994 * 109.46675 * 299.99695 * 10 9 7 30 30 H 1.08995 * 109.84091 * 52.71798 * 13 11 10 31 31 H 1.09011 * 109.74377 * 292.02623 * 13 11 10 32 32 H 1.08004 * 122.13097 * 180.02562 * 19 18 17 33 33 H 1.08999 * 109.68096 * 170.51361 * 23 14 13 34 34 H 1.09000 * 109.68862 * 291.06994 * 23 14 13 35 35 H 1.09001 * 109.50922 * 67.61724 * 24 23 14 36 36 H 1.08993 * 109.51444 * 187.76926 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7103 1.3464 -0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8915 2.3964 1.2126 7 6 2.0103 -1.2022 -0.0005 8 1 3.0904 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0582 -3.6568 -0.0005 11 6 1.0639 -4.8197 0.0001 12 1 0.4377 -4.7638 -0.8904 13 6 1.8321 -6.1511 0.0093 14 7 0.8601 -7.2402 0.1945 15 6 0.8486 -8.3074 -0.6286 16 8 1.5722 -8.3293 -1.6061 17 6 -0.0393 -9.4459 -0.3448 18 7 -0.6292 -10.1898 -1.2411 19 6 -1.3800 -11.1541 -0.7789 20 6 -1.4451 -11.2527 0.5604 21 17 -2.3623 -12.4355 1.4399 22 16 -0.4725 -10.0308 1.2587 23 6 -0.0948 -7.1328 1.3089 24 6 -0.7657 -5.7561 1.2397 25 8 0.2419 -4.7446 1.1674 26 1 -0.4850 0.8400 0.0004 27 1 0.3556 -2.3881 0.0002 28 1 2.6849 -3.7145 0.8895 29 1 2.6847 -3.7145 -0.8905 30 1 2.5513 -6.1576 0.8283 31 1 2.3537 -6.2818 -0.9390 32 1 -1.9136 -11.8296 -1.4311 33 1 -0.8500 -7.9139 1.2218 34 1 0.4336 -7.2363 2.2566 35 1 -1.3985 -5.7036 0.3538 36 1 -1.3731 -5.6018 2.1315 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001673293099.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:47:14 Heat of formation + Delta-G solvation = -2.496675 kcal Electronic energy + Delta-G solvation = -23276.925856 eV Core-core repulsion = 19529.473742 eV Total energy + Delta-G solvation = -3747.452114 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.054 amu Computer time = 1.58 seconds Orbital eigenvalues (eV) -40.90869 -39.94213 -38.34487 -37.46420 -35.28253 -34.49213 -32.38240 -30.98955 -30.19302 -28.54634 -26.99948 -25.39569 -23.69669 -23.03371 -21.70633 -20.87854 -19.93239 -18.96337 -17.57464 -17.11614 -16.98211 -16.38935 -16.06149 -15.79179 -15.24934 -14.91651 -14.76568 -14.57156 -14.34304 -14.03470 -13.50123 -13.25884 -12.94994 -12.78004 -12.69185 -12.59712 -12.31416 -11.72352 -11.52996 -11.12181 -10.98439 -10.92686 -10.81393 -10.54569 -10.17011 -10.10955 -9.96937 -9.88440 -9.70394 -9.40548 -8.87720 -8.77326 -6.89982 -5.73425 -3.02262 -0.45967 0.09980 0.79669 1.42331 1.79340 2.17628 2.68649 3.45618 3.51005 3.53417 3.60705 3.81504 4.22326 4.46739 4.48851 4.59099 4.63384 4.89653 4.95682 5.17460 5.26988 5.30068 5.52217 5.58964 5.59120 5.74168 5.85105 6.03475 6.24402 6.52032 6.64356 6.73730 6.95600 7.35539 7.59063 7.72085 8.44618 9.56600 10.13197 10.49015 11.49401 Molecular weight = 331.05amu Principal moments of inertia in cm(-1) A = 0.032998 B = 0.002341 C = 0.002260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.323947 B =11960.121620 C =12384.541266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.014 4.014 3 Si 0.908 3.092 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.239 4.239 8 H 0.071 0.929 9 N -0.726 5.726 10 C 0.163 3.837 11 C 0.072 3.928 12 H 0.067 0.933 13 C 0.088 3.912 14 N -0.602 5.602 15 C 0.597 3.403 16 O -0.493 6.493 17 C 0.006 3.994 18 N -0.391 5.391 19 C 0.048 3.952 20 C -0.215 4.215 21 Cl 0.016 6.984 22 S 0.247 5.753 23 C 0.056 3.944 24 C 0.050 3.950 25 O -0.352 6.352 26 H 0.254 0.746 27 H 0.388 0.612 28 H 0.030 0.970 29 H 0.037 0.963 30 H 0.087 0.913 31 H 0.108 0.892 32 H 0.189 0.811 33 H 0.087 0.913 34 H 0.091 0.909 35 H 0.057 0.943 36 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.695 -26.603 5.533 27.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.210 4.210 3 Si 0.739 3.261 4 H -0.205 1.205 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.370 4.370 8 H 0.089 0.911 9 N -0.371 5.371 10 C 0.035 3.965 11 C 0.013 3.987 12 H 0.085 0.915 13 C -0.034 4.034 14 N -0.337 5.337 15 C 0.380 3.620 16 O -0.366 6.366 17 C -0.271 4.271 18 N -0.107 5.107 19 C -0.111 4.111 20 C -0.364 4.364 21 Cl 0.044 6.956 22 S 0.501 5.499 23 C -0.068 4.068 24 C -0.028 4.028 25 O -0.270 6.270 26 H 0.064 0.936 27 H 0.222 0.778 28 H 0.048 0.952 29 H 0.055 0.945 30 H 0.105 0.895 31 H 0.126 0.874 32 H 0.206 0.794 33 H 0.104 0.896 34 H 0.109 0.891 35 H 0.075 0.925 36 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -3.843 -26.036 5.671 26.923 hybrid contribution -0.745 -0.296 -0.584 0.992 sum -4.588 -26.332 5.087 27.209 Atomic orbital electron populations 1.69686 1.05117 1.25473 1.57719 1.24750 0.95532 0.97699 1.03028 0.86108 0.78774 0.84097 0.77145 1.20536 1.21912 1.21884 1.19266 0.91049 0.84036 1.42638 0.91054 1.42213 1.06080 0.99423 1.89341 1.20631 0.92281 0.84620 0.98950 1.22932 0.93066 0.93978 0.88694 0.91477 1.22610 0.90936 0.84914 1.04894 1.47960 1.35279 1.20189 1.30278 1.16611 0.81867 0.80551 0.83016 1.90889 1.40583 1.79042 1.26130 1.27530 1.05281 1.02942 0.91319 1.66812 1.06223 1.03299 1.34318 1.21957 0.99729 0.97931 0.91450 1.26806 1.08224 1.03523 0.97844 1.98406 1.70483 1.53012 1.73693 1.84298 1.37464 1.18816 1.09325 1.22936 0.93022 1.00503 0.90336 1.22879 0.90887 0.85690 1.03358 1.88192 1.45901 1.50230 1.42690 0.93599 0.77803 0.95242 0.94497 0.89458 0.87402 0.79418 0.89579 0.89092 0.92464 0.87199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.41 13.06 55.49 0.72 -27.68 16 2 C -0.01 -0.41 5.50 -17.43 -0.10 -0.50 16 3 Si 0.91 22.48 29.55 -169.99 -5.02 17.46 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 6 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 7 C -0.24 -6.71 9.99 -15.06 -0.15 -6.86 16 8 H 0.07 1.93 7.83 -52.48 -0.41 1.52 16 9 N -0.73 -18.53 5.50 -59.90 -0.33 -18.86 16 10 C 0.16 3.21 5.96 -4.04 -0.02 3.19 16 11 C 0.07 1.16 2.88 -26.36 -0.08 1.09 16 12 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 13 C 0.09 1.15 5.97 -3.31 -0.02 1.13 16 14 N -0.60 -7.20 3.01 -173.38 -0.52 -7.73 16 15 C 0.60 8.02 7.68 -12.64 -0.10 7.92 16 16 O -0.49 -8.34 16.58 5.24 0.09 -8.25 16 17 C 0.01 0.06 6.61 -14.48 -0.10 -0.03 16 18 N -0.39 -4.66 10.64 -11.50 -0.12 -4.78 16 19 C 0.05 0.42 11.21 -19.39 -0.22 0.20 16 20 C -0.21 -1.65 6.95 29.39 0.20 -1.45 16 21 Cl 0.02 0.10 29.30 -51.86 -1.52 -1.42 16 22 S 0.25 1.84 19.78 -107.50 -2.13 -0.28 16 23 C 0.06 0.52 5.67 -3.53 -0.02 0.50 16 24 C 0.05 0.57 6.99 37.31 0.26 0.84 16 25 O -0.35 -5.74 10.13 -35.23 -0.36 -6.10 16 26 H 0.25 7.46 8.31 -40.82 -0.34 7.12 16 27 H 0.39 10.55 7.54 -40.82 -0.31 10.25 16 28 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 30 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.11 1.46 7.06 -51.92 -0.37 1.09 16 32 H 0.19 1.17 8.06 -52.48 -0.42 0.75 16 33 H 0.09 0.65 4.46 -32.77 -0.15 0.51 16 34 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.11 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 334.53 15.07 5.04 5.04 Total: -1.00 -34.24 334.53 -8.23 -42.47 By element: Atomic # 1 Polarization: 7.85 SS G_CDS: -3.75 Total: 4.11 kcal Atomic # 6 Polarization: 6.36 SS G_CDS: -0.33 Total: 6.03 kcal Atomic # 7 Polarization: -58.80 SS G_CDS: -0.25 Total: -59.05 kcal Atomic # 8 Polarization: -14.08 SS G_CDS: -0.27 Total: -14.35 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -5.02 Total: 17.46 kcal Atomic # 16 Polarization: 1.84 SS G_CDS: -2.13 Total: -0.28 kcal Atomic # 17 Polarization: 0.10 SS G_CDS: -1.52 Total: -1.42 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -34.24 -8.23 -42.47 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001673293099.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.972 kcal (2) G-P(sol) polarization free energy of solvation -34.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.58 seconds