Wall clock time and date at job start Tue Mar 31 2020 16:47:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86795 * 120.00059 * 2 1 4 4 H 1.48503 * 109.47354 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47454 * 300.00612 * 3 2 1 6 6 H 1.48509 * 109.47090 * 60.00304 * 3 2 1 7 7 C 1.38814 * 119.99912 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99718 * 179.97438 * 7 2 1 9 9 N 1.36933 * 119.99965 * 359.97438 * 7 2 1 10 10 C 1.46508 * 119.99761 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.46723 * 179.97438 * 10 9 7 12 12 H 1.09005 * 109.51409 * 60.10296 * 11 10 9 13 13 C 1.53718 * 109.48240 * 180.36306 * 11 10 9 14 14 N 1.47151 * 108.16158 * 172.40381 * 13 11 10 15 15 C 1.34778 * 120.98419 * 129.43322 * 14 13 11 16 16 O 1.21637 * 119.99754 * 353.83450 * 15 14 13 17 17 C 1.47146 * 120.00091 * 173.83951 * 15 14 13 18 18 N 1.30560 * 125.52895 * 145.91336 * 17 15 14 19 19 C 1.30661 * 115.93130 * 180.02562 * 18 17 15 20 20 C 1.34443 * 115.74217 * 359.97438 * 19 18 17 21 21 Cl 1.73602 * 125.46580 * 180.02562 * 20 19 18 22 22 S 1.71073 * 109.06998 * 359.73139 * 20 19 18 23 23 C 1.47147 * 118.03224 * 309.15211 * 14 13 11 24 24 C 1.53303 * 108.38574 * 50.79090 * 23 14 13 25 25 O 1.42957 * 109.21922 * 307.69494 * 24 23 14 26 26 H 0.96994 * 119.99912 * 359.97438 * 1 2 3 27 27 H 0.96996 * 120.00481 * 359.97438 * 9 7 2 28 28 H 1.09003 * 109.46839 * 59.99765 * 10 9 7 29 29 H 1.08994 * 109.46675 * 299.99695 * 10 9 7 30 30 H 1.08995 * 109.84091 * 52.71798 * 13 11 10 31 31 H 1.09011 * 109.74377 * 292.02623 * 13 11 10 32 32 H 1.08004 * 122.13097 * 180.02562 * 19 18 17 33 33 H 1.08999 * 109.68096 * 170.51361 * 23 14 13 34 34 H 1.09000 * 109.68862 * 291.06994 * 23 14 13 35 35 H 1.09001 * 109.50922 * 67.61724 * 24 23 14 36 36 H 1.08993 * 109.51444 * 187.76926 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7103 1.3464 -0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8915 2.3964 1.2126 7 6 2.0103 -1.2022 -0.0005 8 1 3.0904 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0582 -3.6568 -0.0005 11 6 1.0639 -4.8197 0.0001 12 1 0.4377 -4.7638 -0.8904 13 6 1.8321 -6.1511 0.0093 14 7 0.8601 -7.2402 0.1945 15 6 0.8486 -8.3074 -0.6286 16 8 1.5722 -8.3293 -1.6061 17 6 -0.0393 -9.4459 -0.3448 18 7 -0.6292 -10.1898 -1.2411 19 6 -1.3800 -11.1541 -0.7789 20 6 -1.4451 -11.2527 0.5604 21 17 -2.3623 -12.4355 1.4399 22 16 -0.4725 -10.0308 1.2587 23 6 -0.0948 -7.1328 1.3089 24 6 -0.7657 -5.7561 1.2397 25 8 0.2419 -4.7446 1.1674 26 1 -0.4850 0.8400 0.0004 27 1 0.3556 -2.3881 0.0002 28 1 2.6849 -3.7145 0.8895 29 1 2.6847 -3.7145 -0.8905 30 1 2.5513 -6.1576 0.8283 31 1 2.3537 -6.2818 -0.9390 32 1 -1.9136 -11.8296 -1.4311 33 1 -0.8500 -7.9139 1.2218 34 1 0.4336 -7.2363 2.2566 35 1 -1.3985 -5.7036 0.3538 36 1 -1.3731 -5.6018 2.1315 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001673293099.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:47:13 Heat of formation + Delta-G solvation = 3.225533 kcal Electronic energy + Delta-G solvation = -23276.677722 eV Core-core repulsion = 19529.473742 eV Total energy + Delta-G solvation = -3747.203980 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.054 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -41.12222 -39.93675 -38.60052 -37.29272 -36.39092 -35.90248 -35.07686 -33.35645 -29.96341 -29.12116 -28.08228 -26.46410 -24.49110 -24.30834 -22.81605 -21.84198 -20.90397 -18.96048 -18.65024 -18.26092 -17.92698 -17.65825 -16.87780 -16.55846 -16.10555 -15.86289 -15.80459 -15.49548 -15.12170 -14.88740 -14.69850 -14.37384 -14.03933 -13.77267 -13.52250 -13.46838 -13.08502 -12.72384 -12.44510 -12.38401 -12.16761 -12.09632 -11.82056 -11.62356 -11.49147 -11.44699 -11.16704 -10.88858 -10.13638 -10.07983 -9.17235 -8.61557 -8.26592 -7.72649 -4.34212 -1.64719 0.58150 0.80288 1.23058 1.70505 1.91327 2.12040 2.30347 2.33220 2.57511 2.72025 2.74028 3.31926 3.36078 3.38658 3.65877 3.70964 3.89737 4.00318 4.02646 4.10578 4.19801 4.28291 4.38075 4.44421 4.67493 4.71509 4.79008 4.97310 5.05163 5.12528 5.24498 5.69950 5.86371 5.95691 6.36660 7.02014 7.15152 7.68039 8.37156 9.25269 Molecular weight = 331.05amu Principal moments of inertia in cm(-1) A = 0.032998 B = 0.002341 C = 0.002260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.323947 B =11960.121620 C =12384.541266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.091 4.091 3 Si 1.041 2.959 4 H -0.187 1.187 5 H -0.264 1.264 6 H -0.263 1.263 7 C 0.384 3.616 8 H 0.291 0.709 9 N -0.521 5.521 10 C 0.085 3.915 11 C 0.057 3.943 12 H 0.063 0.937 13 C 0.089 3.911 14 N -0.638 5.638 15 C 0.546 3.454 16 O -0.677 6.677 17 C -0.391 4.391 18 N -0.577 5.577 19 C 0.042 3.958 20 C -0.571 4.571 21 Cl -0.146 7.146 22 S -0.193 6.193 23 C 0.068 3.932 24 C 0.079 3.921 25 O -0.370 6.370 26 H 0.379 0.621 27 H 0.437 0.563 28 H 0.169 0.831 29 H 0.180 0.820 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.071 0.929 33 H 0.082 0.918 34 H 0.050 0.950 35 H 0.041 0.959 36 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.245 61.800 4.901 64.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.180 5.180 2 C -0.327 4.327 3 Si 0.853 3.147 4 H -0.107 1.107 5 H -0.188 1.188 6 H -0.187 1.187 7 C 0.200 3.800 8 H 0.306 0.694 9 N -0.109 5.109 10 C -0.036 4.036 11 C -0.003 4.003 12 H 0.081 0.919 13 C -0.034 4.034 14 N -0.373 5.373 15 C 0.357 3.643 16 O -0.576 6.576 17 C -0.614 4.614 18 N -0.293 5.293 19 C -0.138 4.138 20 C -0.723 4.723 21 Cl -0.120 7.120 22 S 0.035 5.965 23 C -0.058 4.058 24 C 0.002 3.998 25 O -0.289 6.289 26 H 0.199 0.801 27 H 0.278 0.722 28 H 0.187 0.813 29 H 0.197 0.803 30 H 0.097 0.903 31 H 0.098 0.902 32 H 0.089 0.911 33 H 0.100 0.900 34 H 0.068 0.932 35 H 0.060 0.940 36 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 16.764 62.063 4.951 64.477 hybrid contribution -2.310 -1.969 -0.701 3.115 sum 14.454 60.094 4.250 61.953 Atomic orbital electron populations 1.69724 1.10142 1.42139 0.95958 1.28989 0.97666 1.07651 0.98366 0.84044 0.81567 0.68863 0.80265 1.10652 1.18847 1.18740 1.27133 1.04074 0.81259 0.67548 0.69375 1.47294 1.15755 1.08327 1.39536 1.23113 0.93118 0.75730 1.11670 1.22885 0.93311 0.94589 0.89485 0.91941 1.22082 0.92005 0.86257 1.03088 1.47479 1.37037 1.20498 1.32301 1.16557 0.83389 0.82483 0.81830 1.90279 1.48133 1.84438 1.34734 1.22260 1.34873 1.17359 0.86914 1.65639 1.16445 1.10122 1.37095 1.19634 1.03985 0.98818 0.91328 1.21369 1.40298 1.18734 0.91889 1.97866 1.76132 1.60272 1.77715 1.80001 1.62358 1.36338 1.17758 1.22585 0.94351 1.00250 0.88600 1.22797 0.89065 0.84972 1.03001 1.87711 1.46931 1.51314 1.42934 0.80114 0.72165 0.81340 0.80320 0.90316 0.90228 0.91145 0.90010 0.93212 0.94027 0.85065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 33. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.55 7.87 13.06 21.65 0.28 8.15 16 2 C -0.09 1.97 5.50 84.86 0.47 2.44 16 3 Si 1.04 -21.46 29.55 68.60 2.03 -19.44 16 4 H -0.19 4.56 7.11 99.48 0.71 5.27 16 5 H -0.26 3.80 7.11 99.48 0.71 4.50 16 6 H -0.26 3.81 7.11 99.48 0.71 4.52 16 7 C 0.38 -10.17 9.99 84.03 0.84 -9.33 16 8 H 0.29 -11.73 7.83 -2.91 -0.02 -11.75 16 9 N -0.52 8.35 5.50 -343.44 -1.89 6.47 16 10 C 0.08 -0.79 5.96 86.38 0.51 -0.27 16 11 C 0.06 0.78 2.88 30.84 0.09 0.86 16 12 H 0.06 1.09 8.14 -2.38 -0.02 1.07 16 13 C 0.09 2.77 5.97 86.50 0.52 3.29 16 14 N -0.64 -33.36 3.01 -820.71 -2.47 -35.83 16 15 C 0.55 39.67 7.68 86.58 0.66 40.34 16 16 O -0.68 -52.01 16.58 -4.15 -0.07 -52.07 16 17 C -0.39 -32.73 6.61 87.22 0.58 -32.16 16 18 N -0.58 -51.94 10.64 -190.28 -2.03 -53.96 16 19 C 0.04 3.71 11.21 84.00 0.94 4.66 16 20 C -0.57 -47.71 6.95 66.95 0.47 -47.25 16 21 Cl -0.15 -10.42 29.30 -2.72 -0.08 -10.50 16 22 S -0.19 -15.21 19.78 -56.49 -1.12 -16.33 16 23 C 0.07 3.23 5.67 86.36 0.49 3.72 16 24 C 0.08 2.40 6.99 72.08 0.50 2.90 16 25 O -0.37 -6.41 10.13 -148.98 -1.51 -7.92 16 26 H 0.38 -5.87 8.31 -92.71 -0.77 -6.64 16 27 H 0.44 -4.73 7.54 -92.71 -0.70 -5.43 16 28 H 0.17 -2.52 8.14 -2.39 -0.02 -2.54 16 29 H 0.18 -2.85 8.14 -2.39 -0.02 -2.87 16 30 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 31 H 0.08 2.74 7.06 -2.38 -0.02 2.72 16 32 H 0.07 5.96 8.06 -2.91 -0.02 5.94 16 33 H 0.08 5.07 4.46 -14.57 -0.07 5.01 16 34 H 0.05 2.28 8.14 -2.39 -0.02 2.26 16 35 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 36 H 0.13 3.22 8.14 -2.39 -0.02 3.20 16 Total: -1.00 -203.25 334.53 -0.40 -203.65 By element: Atomic # 1 Polarization: 8.22 SS G_CDS: 0.39 Total: 8.60 kcal Atomic # 6 Polarization: -36.88 SS G_CDS: 6.07 Total: -30.81 kcal Atomic # 7 Polarization: -69.07 SS G_CDS: -6.10 Total: -75.18 kcal Atomic # 8 Polarization: -58.41 SS G_CDS: -1.58 Total: -59.99 kcal Atomic # 14 Polarization: -21.46 SS G_CDS: 2.03 Total: -19.44 kcal Atomic # 16 Polarization: -15.21 SS G_CDS: -1.12 Total: -16.33 kcal Atomic # 17 Polarization: -10.42 SS G_CDS: -0.08 Total: -10.50 kcal Total: -203.25 -0.40 -203.65 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001673293099.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 206.871 kcal (2) G-P(sol) polarization free energy of solvation -203.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -203.646 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds