Wall clock time and date at job start Tue Mar 31 2020 17:22:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.35664 * 125.69868 * 2 1 4 4 Cl 1.73602 * 125.58140 * 359.97438 * 3 2 1 5 5 C 1.35722 * 108.83226 * 180.26509 * 3 2 1 6 6 Cl 1.73596 * 126.05948 * 179.74925 * 5 3 2 7 7 C 1.39795 * 107.87193 * 359.73118 * 5 3 2 8 8 C 1.37808 * 125.69023 * 179.79892 * 2 1 3 9 9 C 1.46542 * 126.22606 * 0.02562 * 8 2 1 10 10 O 1.21714 * 120.00025 * 356.13486 * 9 8 2 11 11 N 1.34770 * 119.99805 * 176.13665 * 9 8 2 12 12 C 1.46503 * 119.99821 * 175.38022 * 11 9 8 13 13 C 1.50704 * 109.47322 * 179.97438 * 12 11 9 14 14 C 1.30998 * 119.99471 * 125.27619 * 13 12 11 15 15 C 1.50704 * 119.99226 * 179.72877 * 14 13 12 16 16 N 1.46501 * 109.47033 * 124.99902 * 15 14 13 17 17 C 1.36937 * 119.99876 * 179.97438 * 16 15 14 18 18 H 1.08001 * 120.00129 * 0.02562 * 17 16 15 19 19 C 1.38807 * 119.99980 * 180.02562 * 17 16 15 20 20 N 1.31624 * 120.00194 * 180.02562 * 19 17 16 21 21 Si 1.86806 * 120.00136 * 359.97438 * 19 17 16 22 22 H 1.48497 * 109.47001 * 90.00103 * 21 19 17 23 23 H 1.48501 * 109.47194 * 210.00144 * 21 19 17 24 24 H 1.48493 * 109.46850 * 330.00050 * 21 19 17 25 25 H 1.09004 * 109.47243 * 266.54791 * 1 2 3 26 26 H 1.08997 * 109.46879 * 26.54536 * 1 2 3 27 27 H 1.09004 * 109.47143 * 146.54483 * 1 2 3 28 28 H 1.07994 * 126.42869 * 179.97438 * 7 5 3 29 29 H 0.96993 * 120.00900 * 355.37829 * 11 9 8 30 30 H 1.09005 * 109.47020 * 59.99587 * 12 11 9 31 31 H 1.09005 * 109.47356 * 299.99892 * 12 11 9 32 32 H 1.08000 * 119.99956 * 305.00369 * 13 12 11 33 33 H 1.08001 * 120.00549 * 359.72145 * 14 13 12 34 34 H 1.09004 * 109.46523 * 244.99605 * 15 14 13 35 35 H 1.08990 * 109.47663 * 4.99250 * 15 14 13 36 36 H 0.96995 * 120.00145 * 0.02562 * 16 15 14 37 37 H 0.97000 * 120.00451 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2566 1.1017 0.0000 4 17 1.6995 2.7459 -0.0006 5 6 3.5555 0.7079 -0.0059 6 17 4.9405 1.7545 -0.0145 7 6 3.5800 -0.6898 -0.0036 8 6 2.2690 -1.1192 0.0039 9 6 1.8141 -2.5123 0.0083 10 8 0.6254 -2.7641 0.0797 11 7 2.7120 -3.5145 -0.0668 12 6 2.2668 -4.9062 0.0394 13 6 3.4563 -5.8244 -0.0756 14 6 3.6938 -6.7090 0.8609 15 6 4.8798 -7.6312 0.7428 16 7 5.7108 -7.5143 1.9437 17 6 6.8510 -8.2633 2.0629 18 1 7.1379 -8.9398 1.2715 19 6 7.6380 -8.1529 3.2009 20 7 8.7342 -8.8724 3.3153 21 14 7.1422 -6.9822 4.5696 22 1 6.2744 -7.6954 5.5408 23 1 8.3588 -6.4877 5.2629 24 1 6.3995 -5.8329 3.9929 25 1 -0.3634 -0.0619 1.0258 26 1 -0.3633 0.9193 -0.4593 27 1 -0.3633 -0.8574 -0.5666 28 1 4.4600 -1.3157 -0.0073 29 1 3.6529 -3.3146 -0.1911 30 1 1.5611 -5.1241 -0.7623 31 1 1.7807 -5.0598 1.0029 32 1 4.1104 -5.7560 -0.9323 33 1 3.0398 -6.7773 1.7177 34 1 4.5319 -8.6591 0.6403 35 1 5.4672 -7.3575 -0.1335 36 1 5.4529 -6.9070 2.6547 37 1 9.2845 -8.7951 4.1104 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699266138.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:22:33 Heat of formation + Delta-G solvation = 33.761093 kcal Electronic energy + Delta-G solvation = -22182.826817 eV Core-core repulsion = 18434.903252 eV Total energy + Delta-G solvation = -3747.923566 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.060 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.04812 -39.50504 -37.28511 -36.86241 -36.50269 -35.05622 -33.54769 -32.81140 -31.11531 -29.84226 -27.40578 -27.07862 -24.50785 -22.87267 -21.71718 -21.24429 -20.51638 -19.61383 -18.50899 -17.63669 -16.71535 -16.51516 -16.28259 -15.31063 -15.02473 -14.70532 -14.61566 -14.25434 -14.05895 -13.96846 -13.69534 -13.57488 -13.26853 -12.81991 -12.77841 -12.33867 -12.27258 -12.16444 -11.87849 -11.81227 -11.40407 -11.30977 -10.90602 -10.75791 -10.45027 -10.18655 -9.65391 -9.56353 -9.27755 -9.17836 -8.85180 -8.66944 -7.29060 -5.80860 -3.17590 0.75551 0.96426 1.65670 1.74790 2.01745 2.47033 2.88249 3.15217 3.35403 3.38280 3.43744 4.18394 4.29197 4.50659 4.55792 4.73324 4.75176 4.92979 5.05595 5.10312 5.22059 5.40553 5.48262 5.55444 5.66152 5.70433 5.80652 6.02259 6.06891 6.20727 6.30288 6.42721 6.70730 6.94471 7.14819 7.78587 7.94117 8.37690 9.16026 9.88084 10.07326 11.37207 Molecular weight = 331.06amu Principal moments of inertia in cm(-1) A = 0.013625 B = 0.002405 C = 0.002152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2054.506045 B =11639.315273 C =13008.683723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.395 5.395 3 C 0.091 3.909 4 Cl 0.003 6.997 5 C -0.096 4.096 6 Cl -0.027 7.027 7 C -0.118 4.118 8 C -0.016 4.016 9 C 0.590 3.410 10 O -0.545 6.545 11 N -0.707 5.707 12 C 0.157 3.843 13 C -0.199 4.199 14 C -0.111 4.111 15 C 0.177 3.823 16 N -0.753 5.753 17 C -0.248 4.248 18 H 0.091 0.909 19 C 0.006 3.994 20 N -0.932 5.932 21 Si 0.885 3.115 22 H -0.284 1.284 23 H -0.290 1.290 24 H -0.276 1.276 25 H 0.087 0.913 26 H 0.088 0.912 27 H 0.110 0.890 28 H 0.166 0.834 29 H 0.408 0.592 30 H 0.077 0.923 31 H 0.073 0.927 32 H 0.119 0.881 33 H 0.110 0.890 34 H 0.040 0.960 35 H 0.034 0.966 36 H 0.362 0.638 37 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.488 23.405 -9.806 30.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.070 5.070 3 C -0.054 4.054 4 Cl 0.032 6.968 5 C -0.131 4.131 6 Cl 0.001 6.999 7 C -0.144 4.144 8 C -0.131 4.131 9 C 0.377 3.623 10 O -0.424 6.424 11 N -0.358 5.358 12 C 0.035 3.965 13 C -0.219 4.219 14 C -0.131 4.131 15 C 0.050 3.950 16 N -0.399 5.399 17 C -0.378 4.378 18 H 0.109 0.891 19 C -0.190 4.190 20 N -0.580 5.580 21 Si 0.715 3.285 22 H -0.210 1.210 23 H -0.216 1.216 24 H -0.203 1.203 25 H 0.105 0.895 26 H 0.107 0.893 27 H 0.128 0.872 28 H 0.184 0.816 29 H 0.243 0.757 30 H 0.095 0.905 31 H 0.091 0.909 32 H 0.137 0.863 33 H 0.128 0.872 34 H 0.058 0.942 35 H 0.052 0.948 36 H 0.195 0.805 37 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -18.489 23.237 -9.799 31.270 hybrid contribution 0.269 1.239 1.052 1.647 sum -18.220 24.476 -8.747 31.742 Atomic orbital electron populations 1.22431 0.74397 1.05634 1.05178 1.43736 1.07489 1.03281 1.52531 1.20607 0.88997 0.82583 1.13165 1.98413 1.89842 1.11437 1.97156 1.19582 0.86626 0.91737 1.15117 1.98362 1.39058 1.65044 1.97415 1.21274 0.95751 0.92529 1.04875 1.20028 0.89214 0.87647 1.16180 1.16695 0.85775 0.82930 0.76905 1.90822 1.15867 1.84682 1.51010 1.45699 1.11033 1.05901 1.73171 1.20401 0.95585 0.78013 1.02481 1.22719 0.99374 0.98589 1.01173 1.23383 0.97228 0.95535 0.96920 1.19798 0.88406 0.95864 0.90916 1.42637 1.27387 1.51218 1.18616 1.19053 0.97938 1.17197 1.03594 0.89121 1.24682 0.96917 0.99424 0.98025 1.69701 1.15571 1.43502 1.29229 0.86537 0.77625 0.81325 0.82974 1.21032 1.21616 1.20260 0.89485 0.89337 0.87181 0.81609 0.75676 0.90464 0.90878 0.86281 0.87241 0.94232 0.94775 0.80508 0.92961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.45 10.30 59.85 0.62 1.07 16 2 N -0.39 -3.72 3.17 -116.64 -0.37 -4.09 16 3 C 0.09 0.85 7.39 -16.76 -0.12 0.73 16 4 Cl 0.00 0.02 28.42 -51.86 -1.47 -1.45 16 5 C -0.10 -0.95 6.66 -39.90 -0.27 -1.21 16 6 Cl -0.03 -0.26 29.12 -51.86 -1.51 -1.77 16 7 C -0.12 -1.10 10.34 -39.10 -0.40 -1.50 16 8 C -0.02 -0.16 6.89 -81.93 -0.56 -0.73 16 9 C 0.59 6.57 7.77 -12.92 -0.10 6.47 16 10 O -0.54 -7.30 14.81 5.18 0.08 -7.22 16 11 N -0.71 -6.92 5.53 -62.84 -0.35 -7.27 16 12 C 0.16 1.63 6.11 -5.19 -0.03 1.60 16 13 C -0.20 -2.26 9.24 -36.02 -0.33 -2.60 16 14 C -0.11 -1.55 9.24 -36.02 -0.33 -1.88 16 15 C 0.18 3.21 6.70 -5.19 -0.03 3.18 16 16 N -0.75 -17.47 5.40 -61.09 -0.33 -17.80 16 17 C -0.25 -6.94 10.47 -15.06 -0.16 -7.10 16 18 H 0.09 2.70 8.06 -52.49 -0.42 2.28 16 19 C 0.01 0.16 5.50 -17.43 -0.10 0.07 16 20 N -0.93 -29.04 13.97 55.49 0.78 -28.27 16 21 Si 0.89 21.84 27.74 -169.99 -4.71 17.13 16 22 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 23 H -0.29 -7.25 7.11 56.52 0.40 -6.84 16 24 H -0.28 -6.39 6.52 56.52 0.37 -6.02 16 25 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.09 0.45 7.64 -51.93 -0.40 0.05 16 27 H 0.11 0.87 6.62 -51.93 -0.34 0.52 16 28 H 0.17 1.20 7.46 -52.49 -0.39 0.81 16 29 H 0.41 3.30 7.38 -40.82 -0.30 3.00 16 30 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.07 0.80 7.80 -51.93 -0.40 0.40 16 32 H 0.12 1.27 7.84 -52.49 -0.41 0.86 16 33 H 0.11 1.45 7.84 -52.49 -0.41 1.04 16 34 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.03 0.62 7.79 -51.93 -0.40 0.21 16 36 H 0.36 8.20 5.52 -40.82 -0.23 7.97 16 37 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 LS Contribution 352.18 15.07 5.31 5.31 Total: -1.00 -32.86 352.18 -8.56 -41.43 By element: Atomic # 1 Polarization: 10.06 SS G_CDS: -4.15 Total: 5.91 kcal Atomic # 6 Polarization: -0.08 SS G_CDS: -1.83 Total: -1.90 kcal Atomic # 7 Polarization: -57.15 SS G_CDS: -0.27 Total: -57.42 kcal Atomic # 8 Polarization: -7.30 SS G_CDS: 0.08 Total: -7.22 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -4.71 Total: 17.13 kcal Atomic # 17 Polarization: -0.24 SS G_CDS: -2.98 Total: -3.22 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -32.86 -8.56 -41.43 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699266138.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.190 kcal (2) G-P(sol) polarization free energy of solvation -32.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.429 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds