Wall clock time and date at job start Tue Mar 31 2020 17:22:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.35664 * 125.69868 * 2 1 4 4 Cl 1.73602 * 125.58140 * 359.97438 * 3 2 1 5 5 C 1.35722 * 108.83226 * 180.26509 * 3 2 1 6 6 Cl 1.73596 * 126.05948 * 179.74925 * 5 3 2 7 7 C 1.39795 * 107.87193 * 359.73118 * 5 3 2 8 8 C 1.37808 * 125.69023 * 179.79892 * 2 1 3 9 9 C 1.46542 * 126.22606 * 0.02562 * 8 2 1 10 10 O 1.21714 * 120.00025 * 356.13486 * 9 8 2 11 11 N 1.34770 * 119.99805 * 176.13665 * 9 8 2 12 12 C 1.46503 * 119.99821 * 175.38022 * 11 9 8 13 13 C 1.50704 * 109.47322 * 179.97438 * 12 11 9 14 14 C 1.30998 * 119.99471 * 125.27619 * 13 12 11 15 15 C 1.50704 * 119.99226 * 179.72877 * 14 13 12 16 16 N 1.46501 * 109.47033 * 124.99902 * 15 14 13 17 17 C 1.36937 * 119.99876 * 179.97438 * 16 15 14 18 18 H 1.08001 * 120.00129 * 0.02562 * 17 16 15 19 19 C 1.38807 * 119.99980 * 180.02562 * 17 16 15 20 20 N 1.31624 * 120.00194 * 180.02562 * 19 17 16 21 21 Si 1.86806 * 120.00136 * 359.97438 * 19 17 16 22 22 H 1.48497 * 109.47001 * 90.00103 * 21 19 17 23 23 H 1.48501 * 109.47194 * 210.00144 * 21 19 17 24 24 H 1.48493 * 109.46850 * 330.00050 * 21 19 17 25 25 H 1.09004 * 109.47243 * 266.54791 * 1 2 3 26 26 H 1.08997 * 109.46879 * 26.54536 * 1 2 3 27 27 H 1.09004 * 109.47143 * 146.54483 * 1 2 3 28 28 H 1.07994 * 126.42869 * 179.97438 * 7 5 3 29 29 H 0.96993 * 120.00900 * 355.37829 * 11 9 8 30 30 H 1.09005 * 109.47020 * 59.99587 * 12 11 9 31 31 H 1.09005 * 109.47356 * 299.99892 * 12 11 9 32 32 H 1.08000 * 119.99956 * 305.00369 * 13 12 11 33 33 H 1.08001 * 120.00549 * 359.72145 * 14 13 12 34 34 H 1.09004 * 109.46523 * 244.99605 * 15 14 13 35 35 H 1.08990 * 109.47663 * 4.99250 * 15 14 13 36 36 H 0.96995 * 120.00145 * 0.02562 * 16 15 14 37 37 H 0.97000 * 120.00451 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2566 1.1017 0.0000 4 17 1.6995 2.7459 -0.0006 5 6 3.5555 0.7079 -0.0059 6 17 4.9405 1.7545 -0.0145 7 6 3.5800 -0.6898 -0.0036 8 6 2.2690 -1.1192 0.0039 9 6 1.8141 -2.5123 0.0083 10 8 0.6254 -2.7641 0.0797 11 7 2.7120 -3.5145 -0.0668 12 6 2.2668 -4.9062 0.0394 13 6 3.4563 -5.8244 -0.0756 14 6 3.6938 -6.7090 0.8609 15 6 4.8798 -7.6312 0.7428 16 7 5.7108 -7.5143 1.9437 17 6 6.8510 -8.2633 2.0629 18 1 7.1379 -8.9398 1.2715 19 6 7.6380 -8.1529 3.2009 20 7 8.7342 -8.8724 3.3153 21 14 7.1422 -6.9822 4.5696 22 1 6.2744 -7.6954 5.5408 23 1 8.3588 -6.4877 5.2629 24 1 6.3995 -5.8329 3.9929 25 1 -0.3634 -0.0619 1.0258 26 1 -0.3633 0.9193 -0.4593 27 1 -0.3633 -0.8574 -0.5666 28 1 4.4600 -1.3157 -0.0073 29 1 3.6529 -3.3146 -0.1911 30 1 1.5611 -5.1241 -0.7623 31 1 1.7807 -5.0598 1.0029 32 1 4.1104 -5.7560 -0.9323 33 1 3.0398 -6.7773 1.7177 34 1 4.5319 -8.6591 0.6403 35 1 5.4672 -7.3575 -0.1335 36 1 5.4529 -6.9070 2.6547 37 1 9.2845 -8.7951 4.1104 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699266138.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:22:32 Heat of formation + Delta-G solvation = 12.346058 kcal Electronic energy + Delta-G solvation = -22183.755443 eV Core-core repulsion = 18434.903252 eV Total energy + Delta-G solvation = -3748.852191 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.060 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.75382 -40.34677 -37.94949 -37.76089 -37.54164 -36.37085 -34.65862 -33.89003 -32.85244 -30.74950 -28.66389 -27.68975 -25.90185 -23.97723 -23.18230 -21.98778 -21.43021 -20.64600 -19.58505 -19.20038 -17.48342 -17.23383 -17.15435 -16.59733 -16.23127 -16.01011 -15.55577 -15.31046 -15.12722 -14.89315 -14.78112 -14.49901 -14.28155 -14.17810 -13.85929 -13.49137 -13.37641 -13.00385 -12.95347 -12.76813 -12.53043 -12.46922 -12.17715 -12.04081 -11.94013 -11.76628 -11.32693 -11.05610 -10.46421 -10.05251 -9.95510 -9.38933 -9.28252 -8.02358 -5.36620 0.01961 0.28127 0.96204 1.02220 1.04123 1.40167 1.43381 1.51152 1.74655 2.08520 2.38071 2.49579 3.29447 3.49797 3.61067 3.67593 3.86344 3.93403 4.14429 4.22043 4.30293 4.47284 4.51128 4.58478 4.68764 4.70186 4.92770 5.02071 5.02808 5.23688 5.37058 5.53997 5.66522 5.72910 5.86346 6.21539 6.37343 6.98998 7.08291 7.83583 8.03131 9.18940 Molecular weight = 331.06amu Principal moments of inertia in cm(-1) A = 0.013625 B = 0.002405 C = 0.002152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2054.506045 B =11639.315273 C =13008.683723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.398 5.398 3 C 0.090 3.910 4 Cl 0.015 6.985 5 C -0.112 4.112 6 Cl -0.028 7.028 7 C -0.112 4.112 8 C -0.032 4.032 9 C 0.592 3.408 10 O -0.571 6.571 11 N -0.700 5.700 12 C 0.160 3.840 13 C -0.159 4.159 14 C -0.133 4.133 15 C 0.174 3.826 16 N -0.756 5.756 17 C -0.238 4.238 18 H 0.057 0.943 19 C -0.065 4.065 20 N -0.984 5.984 21 Si 0.957 3.043 22 H -0.279 1.279 23 H -0.296 1.296 24 H -0.248 1.248 25 H 0.092 0.908 26 H 0.107 0.893 27 H 0.102 0.898 28 H 0.184 0.816 29 H 0.417 0.583 30 H 0.086 0.914 31 H 0.071 0.929 32 H 0.131 0.869 33 H 0.118 0.882 34 H 0.034 0.966 35 H 0.036 0.964 36 H 0.367 0.633 37 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.021 25.511 -9.891 33.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.073 5.073 3 C -0.055 4.055 4 Cl 0.044 6.956 5 C -0.146 4.146 6 Cl 0.001 6.999 7 C -0.138 4.138 8 C -0.146 4.146 9 C 0.380 3.620 10 O -0.452 6.452 11 N -0.351 5.351 12 C 0.038 3.962 13 C -0.179 4.179 14 C -0.153 4.153 15 C 0.049 3.951 16 N -0.402 5.402 17 C -0.369 4.369 18 H 0.075 0.925 19 C -0.256 4.256 20 N -0.634 5.634 21 Si 0.784 3.216 22 H -0.205 1.205 23 H -0.222 1.222 24 H -0.173 1.173 25 H 0.110 0.890 26 H 0.126 0.874 27 H 0.120 0.880 28 H 0.201 0.799 29 H 0.254 0.746 30 H 0.104 0.896 31 H 0.089 0.911 32 H 0.148 0.852 33 H 0.136 0.864 34 H 0.052 0.948 35 H 0.054 0.946 36 H 0.201 0.799 37 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -20.059 25.358 -9.923 33.821 hybrid contribution 0.705 0.599 0.920 1.305 sum -19.354 25.957 -9.002 33.607 Atomic orbital electron populations 1.22550 0.73372 1.06290 1.05597 1.43916 1.08208 1.03097 1.52089 1.20768 0.89116 0.83174 1.12472 1.98417 1.89715 1.10450 1.97061 1.19735 0.86867 0.92114 1.15930 1.98359 1.39031 1.65042 1.97459 1.21522 0.96056 0.92565 1.03697 1.19958 0.89697 0.87426 1.17521 1.16786 0.85445 0.83403 0.76402 1.90811 1.16942 1.85082 1.52387 1.45587 1.11450 1.05423 1.72667 1.20336 0.95043 0.78033 1.02795 1.22802 0.98610 0.96464 0.99993 1.23021 0.96737 0.96625 0.98895 1.19893 0.89368 0.96901 0.88929 1.42664 1.26547 1.50530 1.20486 1.19053 0.99106 1.16371 1.02357 0.92451 1.25549 0.97121 1.01870 1.01083 1.69888 1.17345 1.45990 1.30180 0.85382 0.77213 0.79723 0.79309 1.20521 1.22243 1.17255 0.88978 0.87418 0.87983 0.79854 0.74568 0.89599 0.91096 0.85156 0.86381 0.94825 0.94602 0.79927 0.93278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.78 10.30 127.77 1.32 2.10 16 2 N -0.40 -6.83 3.17 -522.93 -1.66 -8.49 16 3 C 0.09 1.54 7.39 83.52 0.62 2.16 16 4 Cl 0.02 0.21 28.42 -2.72 -0.08 0.13 16 5 C -0.11 -2.01 6.66 22.06 0.15 -1.86 16 6 Cl -0.03 -0.48 29.12 -2.72 -0.08 -0.56 16 7 C -0.11 -1.85 10.34 22.58 0.23 -1.62 16 8 C -0.03 -0.58 6.89 40.30 0.28 -0.31 16 9 C 0.59 12.01 7.77 86.41 0.67 12.68 16 10 O -0.57 -14.43 14.81 -4.39 -0.07 -14.49 16 11 N -0.70 -11.80 5.53 -470.92 -2.60 -14.40 16 12 C 0.16 2.85 6.11 85.63 0.52 3.37 16 13 C -0.16 -3.13 9.24 25.65 0.24 -2.89 16 14 C -0.13 -3.40 9.24 25.65 0.24 -3.16 16 15 C 0.17 6.13 6.70 85.63 0.57 6.71 16 16 N -0.76 -34.24 5.40 -347.18 -1.87 -36.12 16 17 C -0.24 -13.43 10.47 84.03 0.88 -12.55 16 18 H 0.06 3.54 8.06 -2.91 -0.02 3.52 16 19 C -0.06 -3.78 5.50 84.86 0.47 -3.32 16 20 N -0.98 -62.72 13.97 21.65 0.30 -62.42 16 21 Si 0.96 44.73 27.74 68.60 1.90 46.63 16 22 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 23 H -0.30 -14.03 7.11 99.48 0.71 -13.32 16 24 H -0.25 -10.32 6.52 99.48 0.65 -9.67 16 25 H 0.09 1.08 8.14 -2.38 -0.02 1.06 16 26 H 0.11 0.90 7.64 -2.39 -0.02 0.88 16 27 H 0.10 1.50 6.62 -2.39 -0.02 1.49 16 28 H 0.18 2.17 7.46 -2.91 -0.02 2.15 16 29 H 0.42 5.45 7.38 -92.71 -0.68 4.77 16 30 H 0.09 1.47 8.14 -2.38 -0.02 1.45 16 31 H 0.07 1.36 7.80 -2.38 -0.02 1.34 16 32 H 0.13 2.32 7.84 -2.91 -0.02 2.30 16 33 H 0.12 2.83 7.84 -2.91 -0.02 2.81 16 34 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 35 H 0.04 1.25 7.79 -2.39 -0.02 1.23 16 36 H 0.37 15.77 5.52 -92.71 -0.51 15.25 16 37 H 0.26 15.67 8.31 -92.71 -0.77 14.90 16 Total: -1.00 -70.99 352.18 1.90 -69.09 By element: Atomic # 1 Polarization: 19.43 SS G_CDS: -0.12 Total: 19.30 kcal Atomic # 6 Polarization: -4.86 SS G_CDS: 6.18 Total: 1.32 kcal Atomic # 7 Polarization: -115.59 SS G_CDS: -5.83 Total: -121.42 kcal Atomic # 8 Polarization: -14.43 SS G_CDS: -0.07 Total: -14.49 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 1.90 Total: 46.63 kcal Atomic # 17 Polarization: -0.27 SS G_CDS: -0.16 Total: -0.42 kcal Total: -70.99 1.90 -69.09 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699266138.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.433 kcal (2) G-P(sol) polarization free energy of solvation -70.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.087 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds