Wall clock time and date at job start Tue Mar 31 2020 17:15:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.47084 * 2 1 4 4 C 1.53006 * 109.47291 * 119.99582 * 2 1 3 5 5 N 1.46499 * 109.47060 * 174.99952 * 4 2 1 6 6 C 1.46499 * 120.00144 * 270.00583 * 5 4 2 7 7 C 1.36936 * 120.00070 * 90.00596 * 5 4 2 8 8 H 1.08001 * 119.99909 * 20.94052 * 7 5 4 9 9 C 1.38810 * 120.00056 * 200.94291 * 7 5 4 10 10 N 1.31614 * 120.00234 * 11.17823 * 9 7 5 11 11 Si 1.86800 * 119.99812 * 191.17610 * 9 7 5 12 12 H 1.48503 * 109.47278 * 0.02562 * 11 9 7 13 13 H 1.48496 * 109.47064 * 119.99942 * 11 9 7 14 14 H 1.48498 * 109.47350 * 239.99931 * 11 9 7 15 15 N 1.46499 * 109.47331 * 240.00211 * 2 1 3 16 16 C 1.34772 * 119.99780 * 84.99645 * 15 2 1 17 17 O 1.21527 * 120.00376 * 0.02562 * 16 15 2 18 18 C 1.48006 * 119.99744 * 180.02562 * 16 15 2 19 19 C 1.39975 * 120.94257 * 270.00403 * 18 16 15 20 20 Cl 1.73602 * 120.50873 * 359.97438 * 19 18 16 21 21 C 1.38287 * 118.97724 * 179.97438 * 19 18 16 22 22 N 1.31790 * 120.91938 * 359.97438 * 21 19 18 23 23 C 1.31795 * 122.09192 * 0.02562 * 22 21 19 24 24 C 1.38291 * 120.91497 * 359.97438 * 23 22 21 25 25 Cl 1.73598 * 120.51004 * 180.02562 * 24 23 22 26 26 H 1.09004 * 109.47062 * 300.00355 * 1 2 3 27 27 H 1.08995 * 109.47232 * 59.99462 * 1 2 3 28 28 H 1.08989 * 109.47189 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47160 * 295.00261 * 4 2 1 30 30 H 1.09006 * 109.46487 * 55.00068 * 4 2 1 31 31 H 1.08991 * 109.47466 * 95.06893 * 6 5 4 32 32 H 1.08995 * 109.47111 * 215.07265 * 6 5 4 33 33 H 1.09002 * 109.47056 * 335.06810 * 6 5 4 34 34 H 0.97002 * 120.00190 * 180.02562 * 10 9 7 35 35 H 0.96995 * 119.99656 * 264.99992 * 15 2 1 36 36 H 1.08000 * 119.54050 * 179.71878 * 21 19 18 37 37 H 1.07997 * 119.53862 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 1.2493 5 7 3.5001 -0.8263 1.1906 6 6 4.1259 -1.9918 0.5612 7 6 4.2799 0.1649 1.7240 8 1 3.8698 0.8345 2.4655 9 6 5.5975 0.3090 1.3117 10 7 6.0345 -0.3527 0.2613 11 14 6.7504 1.4422 2.2478 12 1 6.0204 2.0646 3.3814 13 1 7.8988 0.6587 2.7697 14 1 7.2486 2.5038 1.3368 15 7 2.0184 -0.6905 -1.1962 16 6 2.1470 -0.0181 -2.3571 17 8 1.8584 1.1611 -2.4115 18 6 2.6399 -0.7159 -3.5657 19 6 4.0073 -0.7658 -3.8607 20 17 5.1634 -0.0063 -2.8117 21 6 4.4230 -1.4293 -5.0005 22 7 3.5523 -2.0090 -5.8022 23 6 2.2566 -1.9863 -5.5623 24 6 1.7518 -1.3457 -4.4455 25 17 0.0432 -1.3229 -4.1395 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 1.7517 -0.1582 2.1370 30 1 1.6054 -1.7198 1.2952 31 1 4.3619 -1.7609 -0.4775 32 1 5.0422 -2.2445 1.0945 33 1 3.4390 -2.8374 0.5984 34 1 6.9554 -0.2523 -0.0266 35 1 2.2491 -1.6317 -1.1526 36 1 5.4755 -1.4694 -5.2393 37 1 1.5796 -2.4748 -6.2475 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699459176.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:15:29 Heat of formation + Delta-G solvation = 15.140894 kcal Electronic energy + Delta-G solvation = -24784.916984 eV Core-core repulsion = 21036.185986 eV Total energy + Delta-G solvation = -3748.730998 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.060 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.62933 -39.00243 -36.89542 -36.42578 -36.23715 -34.07334 -32.79264 -31.14121 -31.08378 -30.07411 -26.19025 -25.65776 -25.05310 -23.70630 -21.99202 -20.74328 -20.05145 -18.05736 -17.25401 -16.83545 -16.63329 -15.86944 -15.34454 -14.83986 -14.59755 -14.56333 -14.19341 -13.63660 -13.56748 -13.19907 -12.92461 -12.51307 -12.39697 -12.16389 -11.99927 -11.63680 -11.55539 -11.44821 -11.15517 -10.87303 -10.79995 -10.72293 -10.56851 -10.22297 -10.16298 -9.95786 -9.85692 -9.68565 -9.41087 -8.90992 -8.65887 -8.44539 -6.77206 -5.71353 -3.15599 0.56968 0.65055 1.68106 2.31920 2.83010 3.25556 3.37114 3.45308 3.45822 3.46880 4.16394 4.49440 4.51851 4.61622 4.76896 4.95537 5.30249 5.39376 5.48154 5.57896 5.66082 5.80824 5.96050 6.04625 6.06985 6.19501 6.44122 6.48917 6.62817 6.81719 7.02818 7.35083 7.47663 7.68119 7.81154 7.89736 8.36743 8.54671 9.22920 9.85233 10.32400 11.31716 Molecular weight = 331.06amu Principal moments of inertia in cm(-1) A = 0.013875 B = 0.005514 C = 0.004366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2017.552354 B = 5077.015161 C = 6411.549211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.117 3.883 3 H 0.088 0.912 4 C 0.143 3.857 5 N -0.596 5.596 6 C 0.161 3.839 7 C -0.251 4.251 8 H 0.067 0.933 9 C 0.008 3.992 10 N -0.895 5.895 11 Si 0.898 3.102 12 H -0.280 1.280 13 H -0.292 1.292 14 H -0.293 1.293 15 N -0.679 5.679 16 C 0.569 3.431 17 O -0.524 6.524 18 C -0.063 4.063 19 C -0.060 4.060 20 Cl 0.034 6.966 21 C 0.111 3.889 22 N -0.449 5.449 23 C 0.106 3.894 24 C -0.056 4.056 25 Cl -0.036 7.036 26 H 0.062 0.938 27 H 0.052 0.948 28 H 0.050 0.950 29 H 0.060 0.940 30 H 0.042 0.958 31 H 0.036 0.964 32 H 0.046 0.954 33 H -0.011 1.011 34 H 0.247 0.753 35 H 0.397 0.603 36 H 0.176 0.824 37 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.293 -5.695 -9.459 13.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.010 3.990 3 H 0.106 0.894 4 C 0.015 3.985 5 N -0.318 5.318 6 C 0.016 3.984 7 C -0.380 4.380 8 H 0.085 0.915 9 C -0.190 4.190 10 N -0.540 5.540 11 Si 0.728 3.272 12 H -0.205 1.205 13 H -0.219 1.219 14 H -0.220 1.220 15 N -0.327 5.327 16 C 0.352 3.648 17 O -0.401 6.401 18 C -0.076 4.076 19 C -0.091 4.091 20 Cl 0.064 6.936 21 C -0.047 4.047 22 N -0.158 5.158 23 C -0.052 4.052 24 C -0.086 4.086 25 Cl -0.007 7.007 26 H 0.081 0.919 27 H 0.071 0.929 28 H 0.069 0.931 29 H 0.079 0.921 30 H 0.060 0.940 31 H 0.054 0.946 32 H 0.065 0.935 33 H 0.008 0.992 34 H 0.057 0.943 35 H 0.231 0.769 36 H 0.193 0.807 37 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -8.055 -5.213 -10.110 13.938 hybrid contribution 0.548 0.724 1.185 1.493 sum -7.507 -4.489 -8.925 12.497 Atomic orbital electron populations 1.22150 0.96638 1.01254 1.01819 1.21996 0.91826 0.99235 0.85897 0.89368 1.21189 0.85940 0.97249 0.94142 1.43887 0.98894 1.20966 1.68055 1.20901 0.94479 0.84830 0.98176 1.19173 0.93205 1.09443 1.16213 0.91521 1.24890 0.98376 0.99015 0.96762 1.70070 1.15288 1.44555 1.24117 0.86294 0.81199 0.80355 0.79316 1.20549 1.21851 1.21992 1.45696 1.64677 1.13656 1.08641 1.17556 0.78148 0.86490 0.82601 1.90790 1.50209 1.14577 1.84510 1.20456 0.92165 0.97594 0.97355 1.22590 0.91310 0.99260 0.95897 1.98614 1.55429 1.78403 1.61155 1.22930 1.00638 0.92480 0.88673 1.67778 1.02223 1.16639 1.29143 1.22780 0.92189 0.96159 0.94022 1.22115 0.86899 1.01893 0.97719 1.98405 1.09664 1.97153 1.95441 0.91911 0.92903 0.93083 0.92127 0.94000 0.94592 0.93498 0.99240 0.94287 0.76896 0.80694 0.80972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.33 9.48 37.16 0.35 -1.97 16 2 C 0.12 2.11 2.88 -67.93 -0.20 1.91 16 3 H 0.09 1.91 7.58 -51.93 -0.39 1.52 16 4 C 0.14 2.64 5.33 -4.04 -0.02 2.62 16 5 N -0.60 -13.49 2.78 -181.12 -0.50 -14.00 16 6 C 0.16 3.54 7.58 59.85 0.45 4.00 16 7 C -0.25 -6.44 9.69 -15.06 -0.15 -6.58 16 8 H 0.07 1.72 7.84 -52.49 -0.41 1.31 16 9 C 0.01 0.21 5.14 -17.43 -0.09 0.12 16 10 N -0.90 -23.32 10.04 55.49 0.56 -22.76 16 11 Si 0.90 21.39 29.57 -169.99 -5.03 16.37 16 12 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 13 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 14 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 15 N -0.68 -12.06 4.42 -54.70 -0.24 -12.30 16 16 C 0.57 10.74 5.60 -12.26 -0.07 10.67 16 17 O -0.52 -11.61 16.77 5.34 0.09 -11.53 16 18 C -0.06 -1.04 5.67 -104.59 -0.59 -1.63 16 19 C -0.06 -0.97 6.38 -38.91 -0.25 -1.22 16 20 Cl 0.03 0.65 27.72 -51.86 -1.44 -0.79 16 21 C 0.11 1.47 10.98 -17.55 -0.19 1.28 16 22 N -0.45 -5.76 10.33 -13.24 -0.14 -5.89 16 23 C 0.11 1.25 10.98 -17.55 -0.19 1.06 16 24 C -0.06 -0.77 6.38 -38.91 -0.25 -1.02 16 25 Cl -0.04 -0.45 28.17 -51.86 -1.46 -1.91 16 26 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.05 0.66 8.14 -51.94 -0.42 0.24 16 29 H 0.06 1.10 8.03 -51.93 -0.42 0.68 16 30 H 0.04 0.69 7.86 -51.93 -0.41 0.28 16 31 H 0.04 0.82 6.97 -51.93 -0.36 0.46 16 32 H 0.05 1.15 7.14 -51.93 -0.37 0.78 16 33 H -0.01 -0.21 7.84 -51.93 -0.41 -0.62 16 34 H 0.25 6.45 8.31 -40.82 -0.34 6.11 16 35 H 0.40 6.71 7.17 -40.82 -0.29 6.41 16 36 H 0.18 1.88 8.06 -52.49 -0.42 1.46 16 37 H 0.17 1.44 8.06 -52.49 -0.42 1.02 16 LS Contribution 346.49 15.07 5.22 5.22 Total: -1.00 -29.08 346.49 -8.44 -37.52 By element: Atomic # 1 Polarization: 5.15 SS G_CDS: -4.31 Total: 0.83 kcal Atomic # 6 Polarization: 10.42 SS G_CDS: -1.19 Total: 9.23 kcal Atomic # 7 Polarization: -54.63 SS G_CDS: -0.33 Total: -54.95 kcal Atomic # 8 Polarization: -11.61 SS G_CDS: 0.09 Total: -11.53 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.03 Total: 16.37 kcal Atomic # 17 Polarization: 0.20 SS G_CDS: -2.90 Total: -2.69 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -29.08 -8.44 -37.52 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699459176.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.664 kcal (2) G-P(sol) polarization free energy of solvation -29.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.523 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds