Wall clock time and date at job start Tue Mar 31 2020 17:15:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.47084 * 2 1 4 4 C 1.53006 * 109.47291 * 119.99582 * 2 1 3 5 5 N 1.46499 * 109.47060 * 174.99952 * 4 2 1 6 6 C 1.46499 * 120.00144 * 270.00583 * 5 4 2 7 7 C 1.36936 * 120.00070 * 90.00596 * 5 4 2 8 8 H 1.08001 * 119.99909 * 20.94052 * 7 5 4 9 9 C 1.38810 * 120.00056 * 200.94291 * 7 5 4 10 10 N 1.31614 * 120.00234 * 11.17823 * 9 7 5 11 11 Si 1.86800 * 119.99812 * 191.17610 * 9 7 5 12 12 H 1.48503 * 109.47278 * 0.02562 * 11 9 7 13 13 H 1.48496 * 109.47064 * 119.99942 * 11 9 7 14 14 H 1.48498 * 109.47350 * 239.99931 * 11 9 7 15 15 N 1.46499 * 109.47331 * 240.00211 * 2 1 3 16 16 C 1.34772 * 119.99780 * 84.99645 * 15 2 1 17 17 O 1.21527 * 120.00376 * 0.02562 * 16 15 2 18 18 C 1.48006 * 119.99744 * 180.02562 * 16 15 2 19 19 C 1.39975 * 120.94257 * 270.00403 * 18 16 15 20 20 Cl 1.73602 * 120.50873 * 359.97438 * 19 18 16 21 21 C 1.38287 * 118.97724 * 179.97438 * 19 18 16 22 22 N 1.31790 * 120.91938 * 359.97438 * 21 19 18 23 23 C 1.31795 * 122.09192 * 0.02562 * 22 21 19 24 24 C 1.38291 * 120.91497 * 359.97438 * 23 22 21 25 25 Cl 1.73598 * 120.51004 * 180.02562 * 24 23 22 26 26 H 1.09004 * 109.47062 * 300.00355 * 1 2 3 27 27 H 1.08995 * 109.47232 * 59.99462 * 1 2 3 28 28 H 1.08989 * 109.47189 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47160 * 295.00261 * 4 2 1 30 30 H 1.09006 * 109.46487 * 55.00068 * 4 2 1 31 31 H 1.08991 * 109.47466 * 95.06893 * 6 5 4 32 32 H 1.08995 * 109.47111 * 215.07265 * 6 5 4 33 33 H 1.09002 * 109.47056 * 335.06810 * 6 5 4 34 34 H 0.97002 * 120.00190 * 180.02562 * 10 9 7 35 35 H 0.96995 * 119.99656 * 264.99992 * 15 2 1 36 36 H 1.08000 * 119.54050 * 179.71878 * 21 19 18 37 37 H 1.07997 * 119.53862 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 1.2493 5 7 3.5001 -0.8263 1.1906 6 6 4.1259 -1.9918 0.5612 7 6 4.2799 0.1649 1.7240 8 1 3.8698 0.8345 2.4655 9 6 5.5975 0.3090 1.3117 10 7 6.0345 -0.3527 0.2613 11 14 6.7504 1.4422 2.2478 12 1 6.0204 2.0646 3.3814 13 1 7.8988 0.6587 2.7697 14 1 7.2486 2.5038 1.3368 15 7 2.0184 -0.6905 -1.1962 16 6 2.1470 -0.0181 -2.3571 17 8 1.8584 1.1611 -2.4115 18 6 2.6399 -0.7159 -3.5657 19 6 4.0073 -0.7658 -3.8607 20 17 5.1634 -0.0063 -2.8117 21 6 4.4230 -1.4293 -5.0005 22 7 3.5523 -2.0090 -5.8022 23 6 2.2566 -1.9863 -5.5623 24 6 1.7518 -1.3457 -4.4455 25 17 0.0432 -1.3229 -4.1395 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 1.7517 -0.1582 2.1370 30 1 1.6054 -1.7198 1.2952 31 1 4.3619 -1.7609 -0.4775 32 1 5.0422 -2.2445 1.0945 33 1 3.4390 -2.8374 0.5984 34 1 6.9554 -0.2523 -0.0266 35 1 2.2491 -1.6317 -1.1526 36 1 5.4755 -1.4694 -5.2393 37 1 1.5796 -2.4748 -6.2475 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699459176.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:15:28 Heat of formation + Delta-G solvation = -2.459209 kcal Electronic energy + Delta-G solvation = -24785.680182 eV Core-core repulsion = 21036.185986 eV Total energy + Delta-G solvation = -3749.494196 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.060 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.81526 -40.38266 -38.04605 -37.93529 -37.55006 -35.75620 -34.04614 -32.88132 -32.15433 -31.55361 -27.89682 -27.33774 -26.30329 -24.78929 -23.56067 -22.26215 -21.52156 -19.35640 -18.69882 -18.37646 -17.79740 -17.33034 -16.84477 -16.42567 -15.78647 -15.66480 -15.65774 -15.31981 -15.12184 -14.80222 -14.45932 -13.74810 -13.63698 -13.46925 -13.35711 -13.04039 -12.86598 -12.85064 -12.66652 -12.63880 -12.52815 -12.25609 -12.01518 -11.94617 -11.78161 -11.68465 -11.47626 -10.88035 -10.70289 -10.54002 -10.04105 -10.01789 -8.62460 -7.68222 -5.11858 -0.55422 -0.45112 0.60521 1.08669 1.39859 1.43856 1.48969 1.53995 2.05720 2.25963 2.56055 3.19273 3.36058 3.43493 3.44134 3.58839 3.77972 3.91071 4.15316 4.28559 4.42350 4.53361 4.56830 4.78215 4.86742 4.92697 5.03172 5.05371 5.18446 5.39180 5.48633 5.60349 5.75497 5.91745 6.42814 6.42952 6.46284 7.11767 7.29067 7.99571 8.40552 9.30558 Molecular weight = 331.06amu Principal moments of inertia in cm(-1) A = 0.013875 B = 0.005514 C = 0.004366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2017.552354 B = 5077.015161 C = 6411.549211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.124 3.876 3 H 0.043 0.957 4 C 0.144 3.856 5 N -0.607 5.607 6 C 0.173 3.827 7 C -0.257 4.257 8 H 0.060 0.940 9 C -0.034 4.034 10 N -0.899 5.899 11 Si 0.942 3.058 12 H -0.276 1.276 13 H -0.294 1.294 14 H -0.305 1.305 15 N -0.673 5.673 16 C 0.570 3.430 17 O -0.567 6.567 18 C -0.081 4.081 19 C -0.076 4.076 20 Cl -0.003 7.003 21 C 0.123 3.877 22 N -0.448 5.448 23 C 0.126 3.874 24 C -0.058 4.058 25 Cl -0.024 7.024 26 H 0.079 0.921 27 H 0.040 0.960 28 H 0.075 0.925 29 H 0.065 0.935 30 H 0.073 0.927 31 H 0.024 0.976 32 H 0.014 0.986 33 H 0.022 0.978 34 H 0.239 0.761 35 H 0.402 0.598 36 H 0.199 0.801 37 H 0.214 0.786 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.898 -7.406 -10.407 16.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.017 3.983 3 H 0.062 0.938 4 C 0.016 3.984 5 N -0.330 5.330 6 C 0.028 3.972 7 C -0.388 4.388 8 H 0.078 0.922 9 C -0.231 4.231 10 N -0.544 5.544 11 Si 0.774 3.226 12 H -0.201 1.201 13 H -0.221 1.221 14 H -0.233 1.233 15 N -0.321 5.321 16 C 0.354 3.646 17 O -0.446 6.446 18 C -0.094 4.094 19 C -0.107 4.107 20 Cl 0.026 6.974 21 C -0.034 4.034 22 N -0.156 5.156 23 C -0.032 4.032 24 C -0.088 4.088 25 Cl 0.005 6.995 26 H 0.098 0.902 27 H 0.059 0.941 28 H 0.093 0.907 29 H 0.083 0.917 30 H 0.091 0.909 31 H 0.043 0.957 32 H 0.033 0.967 33 H 0.041 0.959 34 H 0.049 0.951 35 H 0.238 0.762 36 H 0.215 0.785 37 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges -9.683 -6.953 -11.043 16.250 hybrid contribution 0.936 1.199 1.432 2.089 sum -8.747 -5.755 -9.611 14.212 Atomic orbital electron populations 1.22026 0.93558 1.02884 1.02082 1.21811 0.94079 0.96662 0.85779 0.93816 1.21340 0.83596 0.99065 0.94357 1.44007 1.00526 1.20473 1.67960 1.20686 0.93995 0.85664 0.96836 1.19303 0.93700 1.09723 1.16062 0.92203 1.25382 0.99517 1.00490 0.97754 1.70187 1.14714 1.45068 1.24468 0.85586 0.79865 0.78856 0.78317 1.20110 1.22118 1.23303 1.45693 1.64171 1.13788 1.08427 1.17873 0.77279 0.86021 0.83411 1.90758 1.52155 1.16413 1.85322 1.20374 0.92932 0.98841 0.97204 1.22636 0.90527 1.00840 0.96667 1.98597 1.56732 1.79400 1.62657 1.23247 1.01910 0.90952 0.87335 1.67939 1.02639 1.16436 1.28621 1.23433 0.92278 0.94204 0.93252 1.22222 0.87188 1.01742 0.97680 1.98410 1.08577 1.97085 1.95451 0.90234 0.94095 0.90652 0.91681 0.90899 0.95742 0.96670 0.95939 0.95119 0.76249 0.78473 0.77001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.00 9.48 71.98 0.68 -3.31 16 2 C 0.12 4.36 2.88 44.99 0.13 4.49 16 3 H 0.04 1.95 7.58 -2.38 -0.02 1.93 16 4 C 0.14 5.07 5.33 86.38 0.46 5.53 16 5 N -0.61 -27.22 2.78 -726.94 -2.02 -29.25 16 6 C 0.17 7.52 7.58 127.77 0.97 8.49 16 7 C -0.26 -13.32 9.69 84.03 0.81 -12.50 16 8 H 0.06 3.13 7.84 -2.91 -0.02 3.10 16 9 C -0.03 -1.82 5.14 84.86 0.44 -1.39 16 10 N -0.90 -47.76 10.04 21.65 0.22 -47.55 16 11 Si 0.94 44.78 29.57 68.60 2.03 46.81 16 12 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 13 H -0.29 -13.97 7.11 99.48 0.71 -13.27 16 14 H -0.30 -15.01 7.11 99.48 0.71 -14.30 16 15 N -0.67 -23.56 4.42 -445.26 -1.97 -25.53 16 16 C 0.57 21.56 5.60 86.83 0.49 22.04 16 17 O -0.57 -25.76 16.77 -3.80 -0.06 -25.82 16 18 C -0.08 -2.60 5.67 -19.84 -0.11 -2.72 16 19 C -0.08 -2.42 6.38 22.70 0.14 -2.28 16 20 Cl 0.00 -0.13 27.72 -2.72 -0.08 -0.20 16 21 C 0.12 3.05 10.98 84.71 0.93 3.98 16 22 N -0.45 -10.14 10.33 -195.82 -2.02 -12.16 16 23 C 0.13 2.54 10.98 84.71 0.93 3.47 16 24 C -0.06 -1.47 6.38 22.70 0.14 -1.33 16 25 Cl -0.02 -0.55 28.17 -2.72 -0.08 -0.63 16 26 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 27 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 28 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 29 H 0.06 2.25 8.03 -2.39 -0.02 2.23 16 30 H 0.07 2.15 7.86 -2.38 -0.02 2.13 16 31 H 0.02 1.12 6.97 -2.39 -0.02 1.10 16 32 H 0.01 0.73 7.14 -2.39 -0.02 0.71 16 33 H 0.02 0.81 7.84 -2.39 -0.02 0.79 16 34 H 0.24 12.80 8.31 -92.71 -0.77 12.03 16 35 H 0.40 13.10 7.17 -92.71 -0.66 12.43 16 36 H 0.20 3.89 8.06 -2.91 -0.02 3.86 16 37 H 0.21 2.52 8.06 -2.91 -0.02 2.50 16 Total: -1.00 -64.39 346.49 2.48 -61.91 By element: Atomic # 1 Polarization: 7.49 SS G_CDS: 0.45 Total: 7.94 kcal Atomic # 6 Polarization: 18.46 SS G_CDS: 6.02 Total: 24.48 kcal Atomic # 7 Polarization: -108.69 SS G_CDS: -5.80 Total: -114.49 kcal Atomic # 8 Polarization: -25.76 SS G_CDS: -0.06 Total: -25.82 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.81 kcal Atomic # 17 Polarization: -0.68 SS G_CDS: -0.15 Total: -0.83 kcal Total: -64.39 2.48 -61.91 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699459176.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.453 kcal (2) G-P(sol) polarization free energy of solvation -64.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds