Wall clock time and date at job start Tue Mar 31 2020 16:42:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86803 * 119.99870 * 2 1 4 4 H 1.48497 * 109.47191 * 270.00122 * 3 2 1 5 5 H 1.48496 * 109.47162 * 30.00603 * 3 2 1 6 6 H 1.48500 * 109.46665 * 150.00059 * 3 2 1 7 7 C 1.38817 * 120.00049 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99695 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99815 * 359.97438 * 7 2 1 10 10 C 1.47420 * 125.64831 * 359.95802 * 9 7 2 11 11 C 1.54915 * 104.83011 * 204.16249 * 10 9 7 12 12 C 1.55152 * 101.58061 * 322.99511 * 11 10 9 13 13 O 1.42904 * 110.87145 * 277.06484 * 12 11 10 14 14 C 1.52998 * 110.71903 * 153.86548 * 12 11 10 15 15 N 1.46506 * 109.47237 * 190.01885 * 14 12 11 16 16 C 1.34773 * 119.99969 * 179.72043 * 15 14 12 17 17 O 1.21622 * 119.99926 * 0.02562 * 16 15 14 18 18 C 1.47226 * 119.99977 * 180.02562 * 16 15 14 19 19 N 1.30602 * 125.53428 * 180.02562 * 18 16 15 20 20 C 1.30740 * 115.89877 * 180.02562 * 19 18 16 21 21 Cl 1.73602 * 122.12169 * 179.97438 * 20 19 18 22 22 C 1.34332 * 115.75567 * 359.97438 * 20 19 18 23 23 S 1.71073 * 109.09487 * 359.72971 * 22 20 19 24 24 C 1.47026 * 125.64495 * 179.97438 * 9 7 2 25 25 H 0.96996 * 120.00000 * 359.97438 * 1 2 3 26 26 H 1.08994 * 110.36806 * 323.00337 * 10 9 7 27 27 H 1.09002 * 110.36638 * 85.33075 * 10 9 7 28 28 H 1.08997 * 111.00222 * 204.91810 * 11 10 9 29 29 H 1.08999 * 111.00129 * 81.06792 * 11 10 9 30 30 H 0.96701 * 113.99994 * 177.45632 * 13 12 11 31 31 H 1.09001 * 109.47671 * 70.02225 * 14 12 11 32 32 H 1.08998 * 109.47454 * 310.02222 * 14 12 11 33 33 H 0.97005 * 119.99811 * 0.02562 * 15 14 12 34 34 H 1.08005 * 125.45453 * 179.97438 * 22 20 19 35 35 H 1.09003 * 109.88031 * 59.48863 * 24 9 7 36 36 H 1.08996 * 109.87957 * 298.32237 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4477 2.6526 0.7001 6 1 3.5477 1.4401 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 -0.1415 -2.5332 0.0009 11 6 -0.4010 -3.9323 0.6133 12 6 0.7785 -4.7524 0.0273 13 8 0.4752 -5.2089 -1.2924 14 6 1.1241 -5.9311 0.9395 15 7 2.3795 -6.5413 0.4946 16 6 2.8858 -7.6003 1.1567 17 8 2.3003 -8.0497 2.1234 18 6 4.1477 -8.2132 0.7099 19 7 4.7331 -9.2384 1.2684 20 6 5.8516 -9.6286 0.7151 21 17 6.7635 -10.9736 1.3260 22 6 6.2502 -8.9228 -0.3561 23 16 5.1084 -7.6879 -0.6692 24 6 1.9318 -3.7275 -0.0016 25 1 -0.4850 0.8400 0.0004 26 1 -0.5987 -1.7587 0.6167 27 1 -0.5282 -2.4871 -1.0172 28 1 -1.3587 -4.3327 0.2808 29 1 -0.3504 -3.8978 1.7016 30 1 1.1966 -5.6935 -1.7165 31 1 0.3250 -6.6711 0.8957 32 1 1.2355 -5.5770 1.9644 33 1 2.8485 -6.1804 -0.2740 34 1 7.1460 -9.1080 -0.9304 35 1 2.5595 -3.8510 0.8810 36 1 2.5270 -3.8642 -0.9044 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699900059.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:42:42 Heat of formation + Delta-G solvation = -4.950906 kcal Electronic energy + Delta-G solvation = -23344.335548 eV Core-core repulsion = 19596.777011 eV Total energy + Delta-G solvation = -3747.558538 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.054 amu Computer time = 1.87 seconds Orbital eigenvalues (eV) -40.69473 -39.70587 -38.45848 -36.96841 -35.26231 -34.46310 -32.19926 -31.16327 -29.74453 -28.59928 -26.88741 -25.63728 -23.79537 -22.17395 -20.63248 -20.21530 -19.93310 -19.46854 -17.75261 -17.02926 -16.51512 -16.24578 -16.06745 -15.74972 -15.04650 -14.80169 -14.48650 -14.24541 -14.03397 -13.83935 -13.34004 -13.06313 -12.66380 -12.44609 -12.18463 -12.07466 -11.66402 -11.55870 -11.11228 -10.96741 -10.92900 -10.85340 -10.42291 -10.34645 -10.22035 -10.19187 -9.96810 -9.78755 -9.53984 -9.45471 -9.24080 -8.70965 -6.92832 -5.72232 -3.14963 -0.37622 0.46841 0.66796 1.67682 1.69757 2.52949 2.77989 3.35721 3.40529 3.42840 4.02194 4.33067 4.36276 4.39873 4.50563 4.73208 4.92519 5.06101 5.26592 5.42384 5.53226 5.73303 5.83530 5.99875 6.15825 6.30182 6.41525 6.49707 6.52615 6.69926 7.06825 7.49886 7.54440 7.72063 7.78025 7.83060 8.28156 9.13963 9.74378 10.37950 11.31534 Molecular weight = 331.05amu Principal moments of inertia in cm(-1) A = 0.019509 B = 0.002677 C = 0.002480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1434.919887 B =10457.109846 C =11289.105365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.009 4.009 3 Si 0.916 3.084 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.227 4.227 8 H 0.077 0.923 9 N -0.599 5.599 10 C 0.155 3.845 11 C -0.127 4.127 12 C 0.104 3.896 13 O -0.541 6.541 14 C 0.105 3.895 15 N -0.715 5.715 16 C 0.595 3.405 17 O -0.492 6.492 18 C 0.010 3.990 19 N -0.394 5.394 20 C 0.107 3.893 21 Cl -0.002 7.002 22 C -0.256 4.256 23 S 0.239 5.761 24 C 0.114 3.886 25 H 0.253 0.747 26 H 0.109 0.891 27 H 0.019 0.981 28 H 0.073 0.927 29 H 0.077 0.923 30 H 0.364 0.636 31 H 0.084 0.916 32 H 0.087 0.913 33 H 0.398 0.602 34 H 0.197 0.803 35 H 0.032 0.968 36 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.647 -18.156 -2.883 21.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.204 4.204 3 Si 0.746 3.254 4 H -0.216 1.216 5 H -0.216 1.216 6 H -0.207 1.207 7 C -0.355 4.355 8 H 0.095 0.905 9 N -0.325 5.325 10 C 0.031 3.969 11 C -0.166 4.166 12 C 0.062 3.938 13 O -0.345 6.345 14 C -0.018 4.018 15 N -0.368 5.368 16 C 0.376 3.624 17 O -0.364 6.364 18 C -0.267 4.267 19 N -0.111 5.111 20 C -0.058 4.058 21 Cl 0.026 6.974 22 C -0.398 4.398 23 S 0.493 5.507 24 C -0.013 4.013 25 H 0.064 0.936 26 H 0.127 0.873 27 H 0.037 0.963 28 H 0.091 0.909 29 H 0.096 0.904 30 H 0.210 0.790 31 H 0.102 0.898 32 H 0.106 0.894 33 H 0.233 0.767 34 H 0.214 0.786 35 H 0.049 0.951 36 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges 9.283 -17.502 -2.245 19.938 hybrid contribution 2.155 -0.307 -0.216 2.187 sum 11.438 -17.809 -2.461 21.308 Atomic orbital electron populations 1.69781 1.04917 1.24965 1.57109 1.24801 0.95739 0.97787 1.02114 0.86062 0.78530 0.83226 0.77587 1.21577 1.21569 1.20670 1.19045 0.90453 0.82318 1.43718 0.90491 1.44399 1.01979 0.99240 1.86866 1.21960 0.84418 0.91799 0.98738 1.23069 0.95474 0.98201 0.99877 1.22598 0.98207 0.90859 0.82108 1.86653 1.43033 1.76048 1.28780 1.22290 0.84077 0.95564 0.99867 1.45792 1.26260 1.31485 1.33272 1.16537 0.82014 0.80463 0.83433 1.90891 1.58666 1.61408 1.25456 1.27354 1.01878 0.98719 0.98724 1.66060 1.06504 1.10580 1.28005 1.20464 0.93369 0.96712 0.95237 1.98416 1.69766 1.41491 1.87702 1.26530 1.08110 1.01934 1.03252 1.84098 1.12338 1.27228 1.27028 1.21943 0.93674 0.87393 0.98284 0.93571 0.87336 0.96274 0.90876 0.90404 0.79002 0.89811 0.89435 0.76710 0.78600 0.95068 0.95882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 38. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.12 10.09 55.49 0.56 -25.57 16 2 C -0.01 -0.23 5.49 -17.43 -0.10 -0.33 16 3 Si 0.92 21.43 29.55 -169.99 -5.02 16.41 16 4 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 7 C -0.23 -6.09 10.27 -15.06 -0.15 -6.24 16 8 H 0.08 1.98 7.83 -52.48 -0.41 1.57 16 9 N -0.60 -14.56 3.39 -170.07 -0.58 -15.14 16 10 C 0.16 3.65 5.88 -2.53 -0.01 3.64 16 11 C -0.13 -2.28 6.26 -24.58 -0.15 -2.44 16 12 C 0.10 1.63 0.93 -88.79 -0.08 1.54 16 13 O -0.54 -8.15 13.10 -35.23 -0.46 -8.61 16 14 C 0.11 1.38 4.80 -4.04 -0.02 1.36 16 15 N -0.71 -8.11 5.13 -61.45 -0.32 -8.42 16 16 C 0.60 7.88 7.81 -12.61 -0.10 7.78 16 17 O -0.49 -8.38 17.07 5.26 0.09 -8.29 16 18 C 0.01 0.12 7.46 -14.42 -0.11 0.01 16 19 N -0.39 -5.12 10.60 -8.61 -0.09 -5.21 16 20 C 0.11 1.10 7.22 -19.39 -0.14 0.96 16 21 Cl 0.00 -0.02 29.20 -51.86 -1.51 -1.53 16 22 C -0.26 -1.86 10.93 29.35 0.32 -1.54 16 23 S 0.24 1.71 22.30 -107.50 -2.40 -0.69 16 24 C 0.11 2.12 5.76 -3.07 -0.02 2.10 16 25 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 26 H 0.11 2.86 5.87 -51.93 -0.31 2.56 16 27 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 29 H 0.08 1.32 7.96 -51.93 -0.41 0.90 16 30 H 0.36 3.86 8.44 45.56 0.38 4.24 16 31 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.09 1.22 8.03 -51.93 -0.42 0.80 16 33 H 0.40 3.63 6.61 -40.82 -0.27 3.36 16 34 H 0.20 0.80 8.06 -52.48 -0.42 0.38 16 35 H 0.03 0.57 7.82 -51.93 -0.41 0.17 16 36 H 0.02 0.41 8.07 -51.93 -0.42 -0.01 16 LS Contribution 336.00 15.07 5.06 5.06 Total: -1.00 -33.47 336.00 -8.31 -41.79 By element: Atomic # 1 Polarization: 6.43 SS G_CDS: -3.08 Total: 3.35 kcal Atomic # 6 Polarization: 7.41 SS G_CDS: -0.56 Total: 6.85 kcal Atomic # 7 Polarization: -53.91 SS G_CDS: -0.42 Total: -54.34 kcal Atomic # 8 Polarization: -16.53 SS G_CDS: -0.37 Total: -16.90 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Atomic # 16 Polarization: 1.71 SS G_CDS: -2.40 Total: -0.69 kcal Atomic # 17 Polarization: -0.02 SS G_CDS: -1.51 Total: -1.53 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -33.47 -8.31 -41.79 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699900059.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.839 kcal (2) G-P(sol) polarization free energy of solvation -33.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.87 seconds