Wall clock time and date at job start Tue Mar 31 2020 16:42:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86803 * 119.99870 * 2 1 4 4 H 1.48497 * 109.47191 * 270.00122 * 3 2 1 5 5 H 1.48496 * 109.47162 * 30.00603 * 3 2 1 6 6 H 1.48500 * 109.46665 * 150.00059 * 3 2 1 7 7 C 1.38817 * 120.00049 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99695 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99815 * 359.97438 * 7 2 1 10 10 C 1.47420 * 125.64831 * 359.95802 * 9 7 2 11 11 C 1.54915 * 104.83011 * 204.16249 * 10 9 7 12 12 C 1.55152 * 101.58061 * 322.99511 * 11 10 9 13 13 O 1.42904 * 110.87145 * 277.06484 * 12 11 10 14 14 C 1.52998 * 110.71903 * 153.86548 * 12 11 10 15 15 N 1.46506 * 109.47237 * 190.01885 * 14 12 11 16 16 C 1.34773 * 119.99969 * 179.72043 * 15 14 12 17 17 O 1.21622 * 119.99926 * 0.02562 * 16 15 14 18 18 C 1.47226 * 119.99977 * 180.02562 * 16 15 14 19 19 N 1.30602 * 125.53428 * 180.02562 * 18 16 15 20 20 C 1.30740 * 115.89877 * 180.02562 * 19 18 16 21 21 Cl 1.73602 * 122.12169 * 179.97438 * 20 19 18 22 22 C 1.34332 * 115.75567 * 359.97438 * 20 19 18 23 23 S 1.71073 * 109.09487 * 359.72971 * 22 20 19 24 24 C 1.47026 * 125.64495 * 179.97438 * 9 7 2 25 25 H 0.96996 * 120.00000 * 359.97438 * 1 2 3 26 26 H 1.08994 * 110.36806 * 323.00337 * 10 9 7 27 27 H 1.09002 * 110.36638 * 85.33075 * 10 9 7 28 28 H 1.08997 * 111.00222 * 204.91810 * 11 10 9 29 29 H 1.08999 * 111.00129 * 81.06792 * 11 10 9 30 30 H 0.96701 * 113.99994 * 177.45632 * 13 12 11 31 31 H 1.09001 * 109.47671 * 70.02225 * 14 12 11 32 32 H 1.08998 * 109.47454 * 310.02222 * 14 12 11 33 33 H 0.97005 * 119.99811 * 0.02562 * 15 14 12 34 34 H 1.08005 * 125.45453 * 179.97438 * 22 20 19 35 35 H 1.09003 * 109.88031 * 59.48863 * 24 9 7 36 36 H 1.08996 * 109.87957 * 298.32237 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4477 2.6526 0.7001 6 1 3.5477 1.4401 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 -0.1415 -2.5332 0.0009 11 6 -0.4010 -3.9323 0.6133 12 6 0.7785 -4.7524 0.0273 13 8 0.4752 -5.2089 -1.2924 14 6 1.1241 -5.9311 0.9395 15 7 2.3795 -6.5413 0.4946 16 6 2.8858 -7.6003 1.1567 17 8 2.3003 -8.0497 2.1234 18 6 4.1477 -8.2132 0.7099 19 7 4.7331 -9.2384 1.2684 20 6 5.8516 -9.6286 0.7151 21 17 6.7635 -10.9736 1.3260 22 6 6.2502 -8.9228 -0.3561 23 16 5.1084 -7.6879 -0.6692 24 6 1.9318 -3.7275 -0.0016 25 1 -0.4850 0.8400 0.0004 26 1 -0.5987 -1.7587 0.6167 27 1 -0.5282 -2.4871 -1.0172 28 1 -1.3587 -4.3327 0.2808 29 1 -0.3504 -3.8978 1.7016 30 1 1.1966 -5.6935 -1.7165 31 1 0.3250 -6.6711 0.8957 32 1 1.2355 -5.5770 1.9644 33 1 2.8485 -6.1804 -0.2740 34 1 7.1460 -9.1080 -0.9304 35 1 2.5595 -3.8510 0.8810 36 1 2.5270 -3.8642 -0.9044 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699900059.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:42:41 Heat of formation + Delta-G solvation = -32.142169 kcal Electronic energy + Delta-G solvation = -23345.514650 eV Core-core repulsion = 19596.777011 eV Total energy + Delta-G solvation = -3748.737639 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.054 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.58316 -40.72188 -39.71422 -37.65193 -36.81959 -35.57492 -33.97866 -32.01368 -31.29172 -29.94832 -28.05264 -27.08659 -25.26318 -23.20710 -22.10118 -21.46717 -21.07254 -20.27550 -18.89416 -18.64160 -17.63078 -17.21674 -16.98451 -16.72110 -16.67857 -16.03815 -15.69687 -15.50498 -15.35889 -14.81566 -14.71112 -14.49711 -13.89248 -13.71343 -13.31909 -13.26008 -12.91640 -12.81134 -12.75563 -12.35920 -12.23136 -12.06741 -12.00213 -11.98568 -11.69431 -11.51560 -11.01342 -10.99326 -10.90713 -10.71500 -10.47052 -9.93820 -8.87808 -7.75391 -5.19897 -1.08225 -0.16386 -0.03169 0.90841 1.00481 1.49543 1.50846 1.59442 1.61097 1.87422 2.50904 3.17093 3.20744 3.34050 3.44855 3.64096 3.71208 3.90454 3.92461 3.96713 4.31793 4.47509 4.63583 4.65664 4.80490 4.91164 5.02044 5.03482 5.13850 5.49759 5.64909 5.82893 5.91003 6.25418 6.32203 6.77554 6.82907 7.11902 7.79453 8.42565 9.26705 Molecular weight = 331.05amu Principal moments of inertia in cm(-1) A = 0.019509 B = 0.002677 C = 0.002480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1434.919887 B =10457.109846 C =11289.105365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C -0.068 4.068 3 Si 0.979 3.021 4 H -0.288 1.288 5 H -0.297 1.297 6 H -0.267 1.267 7 C -0.236 4.236 8 H 0.086 0.914 9 N -0.622 5.622 10 C 0.159 3.841 11 C -0.120 4.120 12 C 0.125 3.875 13 O -0.552 6.552 14 C 0.118 3.882 15 N -0.701 5.701 16 C 0.599 3.401 17 O -0.541 6.541 18 C -0.036 4.036 19 N -0.432 5.432 20 C 0.079 3.921 21 Cl -0.004 7.004 22 C -0.237 4.237 23 S 0.333 5.667 24 C 0.108 3.892 25 H 0.246 0.754 26 H 0.074 0.926 27 H -0.014 1.014 28 H 0.087 0.913 29 H 0.088 0.912 30 H 0.386 0.614 31 H 0.091 0.909 32 H 0.082 0.918 33 H 0.410 0.590 34 H 0.233 0.767 35 H 0.040 0.960 36 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.919 -19.026 -4.251 23.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.261 4.261 3 Si 0.807 3.193 4 H -0.215 1.215 5 H -0.223 1.223 6 H -0.192 1.192 7 C -0.365 4.365 8 H 0.103 0.897 9 N -0.348 5.348 10 C 0.034 3.966 11 C -0.159 4.159 12 C 0.083 3.917 13 O -0.359 6.359 14 C -0.006 4.006 15 N -0.355 5.355 16 C 0.382 3.618 17 O -0.417 6.417 18 C -0.310 4.310 19 N -0.150 5.150 20 C -0.086 4.086 21 Cl 0.024 6.976 22 C -0.379 4.379 23 S 0.587 5.413 24 C -0.017 4.017 25 H 0.056 0.944 26 H 0.092 0.908 27 H 0.004 0.996 28 H 0.106 0.894 29 H 0.106 0.894 30 H 0.235 0.765 31 H 0.110 0.890 32 H 0.100 0.900 33 H 0.247 0.753 34 H 0.249 0.751 35 H 0.058 0.942 36 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 11.594 -18.393 -3.649 22.046 hybrid contribution 1.556 -0.063 0.072 1.559 sum 13.150 -18.456 -3.576 22.942 Atomic orbital electron populations 1.70045 1.06292 1.25013 1.58598 1.25634 0.96573 1.01042 1.02816 0.85067 0.77685 0.79147 0.77358 1.21472 1.22321 1.19203 1.19463 0.91115 0.83555 1.42397 0.89663 1.44680 1.02520 1.00779 1.86844 1.21661 0.84284 0.94188 0.96502 1.22913 0.97338 0.95286 1.00353 1.22210 0.95711 0.90844 0.82945 1.86621 1.44434 1.76383 1.28472 1.22010 0.85147 0.94656 0.98753 1.45559 1.25642 1.30949 1.33364 1.16763 0.82355 0.80089 0.82637 1.90856 1.60369 1.62861 1.27592 1.26900 1.02438 0.99962 1.01723 1.65963 1.07766 1.11632 1.29683 1.20592 0.93528 0.97813 0.96627 1.98408 1.69575 1.41695 1.87947 1.27085 1.08702 1.00448 1.01675 1.83753 1.09643 1.25043 1.22885 1.22190 0.94821 0.85513 0.99226 0.94380 0.90811 0.99614 0.89431 0.89365 0.76484 0.89045 0.90016 0.75251 0.75083 0.94200 0.94051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -55.65 10.09 21.65 0.22 -55.43 16 2 C -0.07 -3.76 5.49 84.86 0.47 -3.29 16 3 Si 0.98 44.30 29.55 68.60 2.03 46.33 16 4 H -0.29 -12.85 7.11 99.48 0.71 -12.15 16 5 H -0.30 -13.63 7.11 99.48 0.71 -12.92 16 6 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 7 C -0.24 -12.62 10.27 84.03 0.86 -11.76 16 8 H 0.09 4.28 7.83 -2.91 -0.02 4.26 16 9 N -0.62 -30.15 3.39 -691.99 -2.35 -32.50 16 10 C 0.16 7.62 5.88 86.86 0.51 8.13 16 11 C -0.12 -4.22 6.26 31.99 0.20 -4.02 16 12 C 0.12 3.66 0.93 -9.61 -0.01 3.65 16 13 O -0.55 -15.20 13.10 -148.98 -1.95 -17.16 16 14 C 0.12 2.87 4.80 86.38 0.41 3.29 16 15 N -0.70 -14.34 5.13 -466.57 -2.39 -16.73 16 16 C 0.60 15.21 7.81 86.61 0.68 15.88 16 17 O -0.54 -18.52 17.07 -4.10 -0.07 -18.59 16 18 C -0.04 -0.77 7.46 87.24 0.65 -0.11 16 19 N -0.43 -10.84 10.60 -181.16 -1.92 -12.76 16 20 C 0.08 1.48 7.22 83.96 0.61 2.09 16 21 Cl 0.00 -0.07 29.20 -2.72 -0.08 -0.15 16 22 C -0.24 -2.58 10.93 66.93 0.73 -1.85 16 23 S 0.33 3.49 22.30 -56.49 -1.26 2.23 16 24 C 0.11 3.81 5.76 86.73 0.50 4.30 16 25 H 0.25 14.09 8.31 -92.71 -0.77 13.32 16 26 H 0.07 4.06 5.87 -2.39 -0.01 4.05 16 27 H -0.01 -0.76 8.14 -2.39 -0.02 -0.78 16 28 H 0.09 2.82 8.14 -2.39 -0.02 2.80 16 29 H 0.09 2.91 7.96 -2.39 -0.02 2.89 16 30 H 0.39 6.80 8.44 -74.06 -0.62 6.17 16 31 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 32 H 0.08 2.15 8.03 -2.39 -0.02 2.13 16 33 H 0.41 6.15 6.61 -92.70 -0.61 5.53 16 34 H 0.23 0.72 8.06 -2.91 -0.02 0.69 16 35 H 0.04 1.36 7.82 -2.39 -0.02 1.35 16 36 H 0.04 1.33 8.07 -2.39 -0.02 1.31 16 Total: -1.00 -76.03 336.00 -2.25 -78.28 By element: Atomic # 1 Polarization: 10.25 SS G_CDS: -0.08 Total: 10.17 kcal Atomic # 6 Polarization: 10.70 SS G_CDS: 5.61 Total: 16.31 kcal Atomic # 7 Polarization: -110.98 SS G_CDS: -6.44 Total: -117.43 kcal Atomic # 8 Polarization: -33.72 SS G_CDS: -2.02 Total: -35.75 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.33 kcal Atomic # 16 Polarization: 3.49 SS G_CDS: -1.26 Total: 2.23 kcal Atomic # 17 Polarization: -0.07 SS G_CDS: -0.08 Total: -0.15 kcal Total: -76.03 -2.25 -78.28 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699900059.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.139 kcal (2) G-P(sol) polarization free energy of solvation -76.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.281 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds