Wall clock time and date at job start Tue Mar 31 2020 17:15:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.52999 * 109.47317 * 239.99669 * 2 1 3 5 5 N 1.46504 * 109.46822 * 64.99847 * 4 2 1 6 6 C 1.36940 * 120.00039 * 180.02562 * 5 4 2 7 7 H 1.08001 * 119.99791 * 0.02562 * 6 5 4 8 8 C 1.38811 * 119.99997 * 180.02562 * 6 5 4 9 9 N 1.31616 * 120.00105 * 359.97438 * 8 6 5 10 10 Si 1.86801 * 120.00060 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.47242 * 89.99630 * 10 8 6 12 12 H 1.48501 * 109.47290 * 210.00138 * 10 8 6 13 13 H 1.48502 * 109.46849 * 329.99830 * 10 8 6 14 14 C 1.53006 * 109.47127 * 120.00159 * 2 1 3 15 15 N 1.46499 * 109.46679 * 294.99474 * 14 2 1 16 16 C 1.34780 * 119.99539 * 179.97438 * 15 14 2 17 17 O 1.21528 * 120.00528 * 0.02562 * 16 15 14 18 18 C 1.47995 * 119.99648 * 180.02562 * 16 15 14 19 19 C 1.39975 * 120.94501 * 89.72538 * 18 16 15 20 20 Cl 1.73596 * 120.50937 * 359.97438 * 19 18 16 21 21 C 1.38295 * 118.97838 * 179.70689 * 19 18 16 22 22 N 1.31789 * 120.91401 * 0.57827 * 21 19 18 23 23 C 1.31787 * 122.09988 * 359.71464 * 22 21 19 24 24 C 1.38300 * 120.91086 * 359.97438 * 23 22 21 25 25 Cl 1.73598 * 120.50771 * 180.02562 * 24 23 22 26 26 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 27 27 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 28 28 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.47465 * 185.00197 * 4 2 1 30 30 H 1.08998 * 109.47565 * 305.00629 * 4 2 1 31 31 H 0.96995 * 120.00028 * 0.02562 * 5 4 2 32 32 H 0.97004 * 119.99993 * 180.02562 * 9 8 6 33 33 H 1.09001 * 109.47326 * 54.99931 * 14 2 1 34 34 H 1.09000 * 109.46904 * 175.00284 * 14 2 1 35 35 H 0.96996 * 120.00184 * 0.02562 * 15 14 2 36 36 H 1.08010 * 119.54283 * 180.31113 * 21 19 18 37 37 H 1.08001 * 119.54609 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 1.6524 0.0353 -2.4423 6 6 2.0010 -0.4209 -3.6856 7 1 2.5614 -1.3386 -3.7865 8 6 1.6342 0.2962 -4.8161 9 7 0.9509 1.4144 -4.6931 10 14 2.1092 -0.3264 -6.5120 11 1 1.0379 -1.2141 -7.0314 12 1 2.2857 0.8266 -7.4311 13 1 3.3816 -1.0867 -6.4217 14 6 2.0400 -0.7213 1.2493 15 7 1.6525 0.0354 2.4423 16 6 1.9956 -0.4136 3.6660 17 8 2.6269 -1.4459 3.7796 18 6 1.6037 0.3505 4.8713 19 6 0.3847 0.1054 5.5140 20 17 -0.7022 -1.1059 4.9100 21 6 0.0620 0.8391 6.6410 22 7 0.8785 1.7648 7.1030 23 6 2.0326 2.0320 6.5255 24 6 2.4391 1.3428 5.3975 25 17 3.9618 1.7029 4.6457 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 3.1263 -0.7996 -1.2055 30 1 1.6054 -1.7198 -1.2952 31 1 1.1488 0.8593 -2.3517 32 1 0.6943 1.9153 -5.4832 33 1 1.6054 -1.7199 1.2952 34 1 3.1263 -0.7995 1.2056 35 1 1.1484 0.8591 2.3517 36 1 -0.8740 0.6540 7.1471 37 1 2.6702 2.7992 6.9394 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714428987.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:15:54 Heat of formation + Delta-G solvation = -7.306243 kcal Electronic energy + Delta-G solvation = -22873.792810 eV Core-core repulsion = 19124.088431 eV Total energy + Delta-G solvation = -3749.704379 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.060 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.21236 -39.56418 -37.39957 -37.14976 -36.90918 -34.50162 -33.34862 -32.36142 -31.64750 -30.06622 -26.98311 -25.84806 -24.65975 -24.27818 -22.51905 -21.12514 -20.14679 -18.60616 -17.84105 -17.31157 -17.00008 -16.51297 -15.89584 -15.34164 -15.18319 -15.09062 -14.63245 -14.24695 -14.00161 -13.66960 -13.17303 -13.04625 -12.96673 -12.64438 -12.42046 -12.35485 -12.12531 -12.09639 -11.55739 -11.10651 -10.95499 -10.89182 -10.73555 -10.62045 -10.45937 -10.29795 -10.10174 -9.99609 -9.70279 -9.54303 -9.25083 -8.89880 -6.94764 -5.79115 -3.07630 0.04581 0.05883 1.13504 1.51740 2.11772 2.66865 2.81611 3.42581 3.47956 3.49438 3.67786 3.95899 3.99599 4.17241 4.39987 4.56968 4.78648 4.97917 5.02291 5.14777 5.31917 5.52627 5.55523 5.73619 5.88053 5.89726 6.02872 6.15691 6.28419 6.36543 6.61128 6.72799 6.81937 6.97825 7.15627 7.68613 7.80337 8.39946 9.51354 10.08161 10.42895 11.43848 Molecular weight = 331.06amu Principal moments of inertia in cm(-1) A = 0.019183 B = 0.002539 C = 0.002394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1459.249390 B =11027.233228 C =11692.027334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.110 4.110 3 H 0.078 0.922 4 C 0.161 3.839 5 N -0.731 5.731 6 C -0.239 4.239 7 H 0.070 0.930 8 C -0.014 4.014 9 N -0.934 5.934 10 Si 0.907 3.093 11 H -0.290 1.290 12 H -0.291 1.291 13 H -0.282 1.282 14 C 0.126 3.874 15 N -0.705 5.705 16 C 0.561 3.439 17 O -0.509 6.509 18 C -0.063 4.063 19 C -0.055 4.055 20 Cl -0.021 7.021 21 C 0.121 3.879 22 N -0.444 5.444 23 C 0.121 3.879 24 C -0.055 4.055 25 Cl -0.020 7.020 26 H 0.071 0.929 27 H 0.041 0.959 28 H 0.054 0.946 29 H 0.021 0.979 30 H 0.023 0.977 31 H 0.384 0.616 32 H 0.255 0.745 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.403 0.597 36 H 0.180 0.820 37 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.525 1.568 26.454 26.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.130 4.130 3 H 0.096 0.904 4 C 0.033 3.967 5 N -0.375 5.375 6 C -0.370 4.370 7 H 0.088 0.912 8 C -0.210 4.210 9 N -0.583 5.583 10 Si 0.738 3.262 11 H -0.217 1.217 12 H -0.218 1.218 13 H -0.207 1.207 14 C 0.003 3.997 15 N -0.356 5.356 16 C 0.343 3.657 17 O -0.384 6.384 18 C -0.075 4.075 19 C -0.085 4.085 20 Cl 0.008 6.992 21 C -0.037 4.037 22 N -0.152 5.152 23 C -0.037 4.037 24 C -0.085 4.085 25 Cl 0.009 6.991 26 H 0.090 0.910 27 H 0.060 0.940 28 H 0.073 0.927 29 H 0.039 0.961 30 H 0.041 0.959 31 H 0.218 0.782 32 H 0.065 0.935 33 H 0.092 0.908 34 H 0.092 0.908 35 H 0.238 0.762 36 H 0.197 0.803 37 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -1.181 1.091 26.973 27.021 hybrid contribution 0.095 -0.151 -1.843 1.852 sum -1.086 0.940 25.130 25.171 Atomic orbital electron populations 1.21798 0.94549 1.02033 1.01542 1.21565 0.96811 1.00584 0.94003 0.90379 1.20562 0.96637 0.94201 0.85289 1.42330 1.66979 1.27652 1.00557 1.19231 1.28769 1.05392 0.83628 0.91153 1.24733 1.01016 0.97373 0.97866 1.69654 1.43573 1.16564 1.28506 0.86182 0.78038 0.77529 0.84402 1.21714 1.21775 1.20746 1.21548 1.00526 0.95316 0.82265 1.45978 1.56526 1.27762 1.05329 1.17696 0.80323 0.84958 0.82705 1.90862 1.38726 1.22840 1.85994 1.20348 0.93255 0.95955 0.97969 1.22179 0.92272 0.96286 0.97768 1.98452 1.61307 1.52567 1.86844 1.22975 0.99501 0.90022 0.91230 1.67865 1.03171 1.14784 1.29416 1.22978 0.93087 0.97534 0.90108 1.22189 0.91022 0.97808 0.97489 1.98456 1.26590 1.93389 1.80668 0.91024 0.93975 0.92714 0.96082 0.95945 0.78199 0.93518 0.90799 0.90802 0.76198 0.80302 0.80289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 27. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.02 8.94 37.16 0.33 -1.68 16 2 C -0.11 -1.63 2.46 -90.62 -0.22 -1.85 16 3 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 4 C 0.16 3.11 5.65 -4.04 -0.02 3.09 16 5 N -0.73 -17.99 5.33 -59.91 -0.32 -18.31 16 6 C -0.24 -6.63 9.99 -15.06 -0.15 -6.78 16 7 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 8 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 9 N -0.93 -27.90 13.06 55.49 0.72 -27.18 16 10 Si 0.91 22.32 29.55 -169.99 -5.02 17.29 16 11 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 12 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 13 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 14 C 0.13 1.65 5.06 -4.04 -0.02 1.63 16 15 N -0.71 -8.07 5.28 -61.20 -0.32 -8.40 16 16 C 0.56 7.07 5.63 -12.26 -0.07 7.00 16 17 O -0.51 -8.18 17.10 5.34 0.09 -8.09 16 18 C -0.06 -0.65 5.67 -104.59 -0.59 -1.24 16 19 C -0.06 -0.49 6.38 -38.91 -0.25 -0.74 16 20 Cl -0.02 -0.19 28.17 -51.86 -1.46 -1.65 16 21 C 0.12 0.87 10.98 -17.55 -0.19 0.68 16 22 N -0.44 -3.52 10.33 -13.24 -0.14 -3.66 16 23 C 0.12 0.88 10.98 -17.55 -0.19 0.69 16 24 C -0.06 -0.50 6.38 -38.91 -0.25 -0.75 16 25 Cl -0.02 -0.19 28.17 -51.86 -1.46 -1.65 16 26 H 0.07 1.20 7.18 -51.93 -0.37 0.83 16 27 H 0.04 0.48 7.18 -51.93 -0.37 0.11 16 28 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.38 9.84 6.85 -40.82 -0.28 9.56 16 32 H 0.25 7.38 8.31 -40.82 -0.34 7.04 16 33 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.40 3.89 7.64 -40.82 -0.31 3.58 16 36 H 0.18 0.79 8.06 -52.48 -0.42 0.37 16 37 H 0.18 0.81 8.06 -52.49 -0.42 0.38 16 LS Contribution 351.91 15.07 5.30 5.30 Total: -1.00 -32.42 351.91 -8.60 -41.02 By element: Atomic # 1 Polarization: 10.04 SS G_CDS: -4.27 Total: 5.78 kcal Atomic # 6 Polarization: 1.27 SS G_CDS: -1.72 Total: -0.45 kcal Atomic # 7 Polarization: -57.49 SS G_CDS: -0.05 Total: -57.54 kcal Atomic # 8 Polarization: -8.18 SS G_CDS: 0.09 Total: -8.09 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.29 kcal Atomic # 17 Polarization: -0.38 SS G_CDS: -2.92 Total: -3.30 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -32.42 -8.60 -41.02 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714428987.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.712 kcal (2) G-P(sol) polarization free energy of solvation -32.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds