Wall clock time and date at job start Tue Mar 31 2020 17:14:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46801 * 2 1 4 4 C 1.52997 * 109.47127 * 239.99728 * 2 1 3 5 5 C 1.53001 * 109.46997 * 174.99904 * 4 2 1 6 6 N 1.46504 * 109.46748 * 179.97438 * 5 4 2 7 7 C 1.36936 * 119.99458 * 180.02562 * 6 5 4 8 8 H 1.08004 * 120.00538 * 359.97438 * 7 6 5 9 9 C 1.38819 * 119.99842 * 180.02562 * 7 6 5 10 10 N 1.31615 * 119.99971 * 180.02562 * 9 7 6 11 11 Si 1.86794 * 119.99800 * 359.97438 * 9 7 6 12 12 H 1.48495 * 109.47468 * 90.00169 * 11 9 7 13 13 H 1.48500 * 109.47220 * 210.00168 * 11 9 7 14 14 H 1.48503 * 109.47284 * 330.00241 * 11 9 7 15 15 N 1.46500 * 109.46998 * 119.99942 * 2 1 3 16 16 C 1.34773 * 119.99910 * 275.00232 * 15 2 1 17 17 O 1.21532 * 120.00260 * 359.97438 * 16 15 2 18 18 C 1.48025 * 119.99872 * 180.02562 * 16 15 2 19 19 N 1.32791 * 119.72586 * 359.72330 * 18 16 15 20 20 C 1.31428 * 121.67259 * 179.71495 * 19 18 16 21 21 C 1.38805 * 120.91558 * 0.55949 * 20 19 18 22 22 Cl 1.73603 * 120.32904 * 179.74778 * 21 20 19 23 23 C 1.38658 * 119.34378 * 359.72964 * 21 20 19 24 24 C 1.38735 * 118.46930 * 0.02562 * 23 21 20 25 25 Cl 1.73604 * 120.47631 * 179.97438 * 24 23 21 26 26 H 1.09001 * 109.47002 * 59.99846 * 1 2 3 27 27 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47050 * 300.00112 * 1 2 3 29 29 H 1.08993 * 109.47322 * 295.00205 * 4 2 1 30 30 H 1.09002 * 109.47196 * 55.00329 * 4 2 1 31 31 H 1.08993 * 109.47331 * 300.00296 * 5 4 2 32 32 H 1.09001 * 109.46791 * 60.00740 * 5 4 2 33 33 H 0.96992 * 120.00104 * 0.02562 * 6 5 4 34 34 H 0.96993 * 119.99905 * 179.97438 * 10 9 7 35 35 H 0.96995 * 120.00293 * 94.99410 * 15 2 1 36 36 H 1.08000 * 119.54122 * 180.29677 * 20 19 18 37 37 H 1.08007 * 120.76488 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5649 -0.6133 -1.3136 6 7 4.0532 -1.3045 -2.5095 7 6 5.3953 -1.3414 -2.7788 8 1 6.0938 -0.8606 -2.1099 9 6 5.8581 -1.9959 -3.9122 10 7 7.1481 -2.0317 -4.1707 11 14 4.6501 -2.8268 -5.0694 12 1 4.2150 -1.8596 -6.1088 13 1 5.3068 -3.9895 -5.7192 14 1 3.4679 -3.2921 -4.3004 15 7 2.0184 -0.6906 1.1962 16 6 2.1470 -0.0182 2.3571 17 8 1.8584 1.1610 2.4116 18 6 2.6409 -0.7159 3.5656 19 7 2.9505 -2.0056 3.5011 20 6 3.3975 -2.6613 4.5488 21 6 3.5528 -2.0274 5.7738 22 17 4.1383 -2.9098 7.1494 23 6 3.2361 -0.6823 5.8879 24 6 2.7713 -0.0147 4.7640 25 17 2.3587 1.6695 4.8482 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.7517 -1.7715 -1.2055 30 1 1.6055 -0.2618 -2.1370 31 1 3.8532 0.4369 -1.3573 32 1 3.9995 -1.0729 -0.4259 33 1 3.4259 -1.7360 -3.1104 34 1 7.4715 -2.4893 -4.9625 35 1 2.2490 -1.6317 1.1527 36 1 3.6433 -3.7089 4.4563 37 1 3.3486 -0.1662 6.8299 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715700073.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:14:25 Heat of formation + Delta-G solvation = 4.977449 kcal Electronic energy + Delta-G solvation = -22945.475844 eV Core-core repulsion = 19196.304126 eV Total energy + Delta-G solvation = -3749.171718 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.060 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.14403 -39.42647 -37.32606 -36.98052 -36.58654 -34.52612 -33.20399 -32.10964 -31.53303 -30.59130 -28.27891 -25.41203 -24.34306 -23.83673 -21.83495 -21.19185 -20.55825 -18.66037 -17.76616 -17.57044 -17.11866 -16.15959 -15.72013 -15.61271 -14.78613 -14.51513 -14.38740 -14.07807 -13.98395 -13.65371 -13.34805 -13.33135 -12.85006 -12.61000 -12.49487 -12.28600 -12.15111 -11.96832 -11.58351 -11.51699 -11.20687 -10.89893 -10.74254 -10.58706 -10.51151 -10.19581 -10.13848 -9.68819 -9.58371 -9.45304 -9.05170 -8.87320 -7.22364 -5.75656 -3.11336 -0.14136 0.36022 1.21330 1.70439 2.32964 2.86346 3.27350 3.37544 3.40198 3.45560 3.65551 3.98962 4.12988 4.35125 4.45164 4.59796 4.76516 5.02792 5.13104 5.16923 5.25820 5.50889 5.57043 5.63115 5.64564 5.79139 5.92731 5.93713 6.15036 6.21162 6.43377 6.72904 6.75950 6.94824 7.46589 8.00855 8.06416 8.43254 9.22450 9.94598 10.14460 11.42896 Molecular weight = 331.06amu Principal moments of inertia in cm(-1) A = 0.012465 B = 0.002920 C = 0.002561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2245.779492 B = 9586.362041 C =10931.529640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.145 3.855 3 H 0.094 0.906 4 C -0.139 4.139 5 C 0.157 3.843 6 N -0.757 5.757 7 C -0.244 4.244 8 H 0.089 0.911 9 C 0.003 3.997 10 N -0.935 5.935 11 Si 0.886 3.114 12 H -0.284 1.284 13 H -0.291 1.291 14 H -0.277 1.277 15 N -0.696 5.696 16 C 0.565 3.435 17 O -0.512 6.512 18 C 0.096 3.904 19 N -0.424 5.424 20 C 0.119 3.881 21 C -0.062 4.062 22 Cl -0.035 7.035 23 C -0.068 4.068 24 C -0.030 4.030 25 Cl 0.000 7.000 26 H 0.067 0.933 27 H 0.056 0.944 28 H 0.059 0.941 29 H 0.069 0.931 30 H 0.080 0.920 31 H 0.027 0.973 32 H 0.027 0.973 33 H 0.360 0.640 34 H 0.259 0.741 35 H 0.412 0.588 36 H 0.181 0.819 37 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.448 0.578 23.938 27.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.040 3.960 3 H 0.112 0.888 4 C -0.177 4.177 5 C 0.030 3.970 6 N -0.402 5.402 7 C -0.374 4.374 8 H 0.107 0.893 9 C -0.193 4.193 10 N -0.583 5.583 11 Si 0.717 3.283 12 H -0.211 1.211 13 H -0.218 1.218 14 H -0.203 1.203 15 N -0.347 5.347 16 C 0.348 3.652 17 O -0.386 6.386 18 C -0.043 4.043 19 N -0.135 5.135 20 C -0.042 4.042 21 C -0.091 4.091 22 Cl -0.006 7.006 23 C -0.095 4.095 24 C -0.061 4.061 25 Cl 0.029 6.971 26 H 0.086 0.914 27 H 0.075 0.925 28 H 0.078 0.922 29 H 0.087 0.913 30 H 0.099 0.901 31 H 0.045 0.955 32 H 0.045 0.955 33 H 0.193 0.807 34 H 0.069 0.931 35 H 0.248 0.752 36 H 0.198 0.802 37 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -13.516 1.152 23.269 26.934 hybrid contribution -0.349 -0.754 0.100 0.837 sum -13.865 0.398 23.370 27.176 Atomic orbital electron populations 1.22166 0.95128 1.02136 1.02504 1.21049 0.93757 0.97854 0.83293 0.88838 1.22120 0.98142 1.00937 0.96551 1.20624 0.90128 0.96014 0.90241 1.42704 1.05308 1.66085 1.26146 1.19067 0.82249 1.29313 1.06742 0.89316 1.24685 0.95617 1.00702 0.98251 1.69704 1.11735 1.48282 1.28574 0.86517 0.80873 0.79440 0.81507 1.21092 1.21751 1.20330 1.45961 1.65137 1.14872 1.08772 1.17565 0.78856 0.86223 0.82524 1.90889 1.49414 1.14190 1.84149 1.21342 0.98955 0.90166 0.93875 1.67900 1.08762 1.06805 1.30020 1.23017 0.94261 1.01151 0.85744 1.22281 1.02091 0.93312 0.91449 1.98423 1.86299 1.74739 1.41101 1.21499 0.96350 0.92512 0.99159 1.21918 1.00407 0.89738 0.94023 1.98456 1.90801 1.09691 1.98155 0.91362 0.92458 0.92208 0.91266 0.90099 0.95519 0.95481 0.80706 0.93072 0.75191 0.80200 0.82014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 25. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.72 9.48 37.16 0.35 -1.37 16 2 C 0.14 1.83 2.57 -67.93 -0.17 1.66 16 3 H 0.09 1.31 7.58 -51.93 -0.39 0.91 16 4 C -0.14 -1.98 4.87 -26.73 -0.13 -2.11 16 5 C 0.16 3.01 6.15 -4.04 -0.02 2.99 16 6 N -0.76 -18.05 5.41 -59.90 -0.32 -18.37 16 7 C -0.24 -7.01 10.47 -15.06 -0.16 -7.17 16 8 H 0.09 2.75 8.06 -52.48 -0.42 2.33 16 9 C 0.00 0.09 5.50 -17.43 -0.10 -0.01 16 10 N -0.93 -29.64 13.97 55.49 0.78 -28.87 16 11 Si 0.89 22.10 27.73 -169.99 -4.71 17.39 16 12 H -0.28 -7.04 7.11 56.52 0.40 -6.63 16 13 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 14 H -0.28 -6.43 6.52 56.52 0.37 -6.07 16 15 N -0.70 -8.81 4.52 -54.69 -0.25 -9.06 16 16 C 0.57 7.65 7.77 -12.25 -0.10 7.55 16 17 O -0.51 -7.85 13.60 5.34 0.07 -7.78 16 18 C 0.10 1.14 6.75 -82.99 -0.56 0.58 16 19 N -0.42 -4.59 9.54 -9.75 -0.09 -4.68 16 20 C 0.12 1.00 10.98 -17.51 -0.19 0.81 16 21 C -0.06 -0.47 6.35 -39.22 -0.25 -0.72 16 22 Cl -0.03 -0.23 28.99 -51.86 -1.50 -1.73 16 23 C -0.07 -0.55 9.78 -39.24 -0.38 -0.93 16 24 C -0.03 -0.32 6.37 -38.94 -0.25 -0.57 16 25 Cl 0.00 -0.01 26.03 -51.86 -1.35 -1.36 16 26 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 27 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 28 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 29 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 31 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.03 0.53 7.75 -51.93 -0.40 0.13 16 33 H 0.36 8.27 5.53 -40.82 -0.23 8.05 16 34 H 0.26 7.80 8.31 -40.82 -0.34 7.46 16 35 H 0.41 4.96 7.93 -40.82 -0.32 4.64 16 36 H 0.18 1.05 8.06 -52.49 -0.42 0.62 16 37 H 0.16 0.91 8.06 -52.48 -0.42 0.48 16 LS Contribution 347.69 15.07 5.24 5.24 Total: -1.00 -33.15 347.69 -8.42 -41.57 By element: Atomic # 1 Polarization: 11.24 SS G_CDS: -4.32 Total: 6.93 kcal Atomic # 6 Polarization: 2.68 SS G_CDS: -1.96 Total: 0.72 kcal Atomic # 7 Polarization: -61.09 SS G_CDS: 0.11 Total: -60.98 kcal Atomic # 8 Polarization: -7.85 SS G_CDS: 0.07 Total: -7.78 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -4.71 Total: 17.39 kcal Atomic # 17 Polarization: -0.23 SS G_CDS: -2.85 Total: -3.09 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -33.15 -8.42 -41.57 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715700073.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.551 kcal (2) G-P(sol) polarization free energy of solvation -33.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.573 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds