Wall clock time and date at job start Tue Mar 31 2020 17:14:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46801 * 2 1 4 4 C 1.52997 * 109.47127 * 239.99728 * 2 1 3 5 5 C 1.53001 * 109.46997 * 174.99904 * 4 2 1 6 6 N 1.46504 * 109.46748 * 179.97438 * 5 4 2 7 7 C 1.36936 * 119.99458 * 180.02562 * 6 5 4 8 8 H 1.08004 * 120.00538 * 359.97438 * 7 6 5 9 9 C 1.38819 * 119.99842 * 180.02562 * 7 6 5 10 10 N 1.31615 * 119.99971 * 180.02562 * 9 7 6 11 11 Si 1.86794 * 119.99800 * 359.97438 * 9 7 6 12 12 H 1.48495 * 109.47468 * 90.00169 * 11 9 7 13 13 H 1.48500 * 109.47220 * 210.00168 * 11 9 7 14 14 H 1.48503 * 109.47284 * 330.00241 * 11 9 7 15 15 N 1.46500 * 109.46998 * 119.99942 * 2 1 3 16 16 C 1.34773 * 119.99910 * 275.00232 * 15 2 1 17 17 O 1.21532 * 120.00260 * 359.97438 * 16 15 2 18 18 C 1.48025 * 119.99872 * 180.02562 * 16 15 2 19 19 N 1.32791 * 119.72586 * 359.72330 * 18 16 15 20 20 C 1.31428 * 121.67259 * 179.71495 * 19 18 16 21 21 C 1.38805 * 120.91558 * 0.55949 * 20 19 18 22 22 Cl 1.73603 * 120.32904 * 179.74778 * 21 20 19 23 23 C 1.38658 * 119.34378 * 359.72964 * 21 20 19 24 24 C 1.38735 * 118.46930 * 0.02562 * 23 21 20 25 25 Cl 1.73604 * 120.47631 * 179.97438 * 24 23 21 26 26 H 1.09001 * 109.47002 * 59.99846 * 1 2 3 27 27 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47050 * 300.00112 * 1 2 3 29 29 H 1.08993 * 109.47322 * 295.00205 * 4 2 1 30 30 H 1.09002 * 109.47196 * 55.00329 * 4 2 1 31 31 H 1.08993 * 109.47331 * 300.00296 * 5 4 2 32 32 H 1.09001 * 109.46791 * 60.00740 * 5 4 2 33 33 H 0.96992 * 120.00104 * 0.02562 * 6 5 4 34 34 H 0.96993 * 119.99905 * 179.97438 * 10 9 7 35 35 H 0.96995 * 120.00293 * 94.99410 * 15 2 1 36 36 H 1.08000 * 119.54122 * 180.29677 * 20 19 18 37 37 H 1.08007 * 120.76488 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5649 -0.6133 -1.3136 6 7 4.0532 -1.3045 -2.5095 7 6 5.3953 -1.3414 -2.7788 8 1 6.0938 -0.8606 -2.1099 9 6 5.8581 -1.9959 -3.9122 10 7 7.1481 -2.0317 -4.1707 11 14 4.6501 -2.8268 -5.0694 12 1 4.2150 -1.8596 -6.1088 13 1 5.3068 -3.9895 -5.7192 14 1 3.4679 -3.2921 -4.3004 15 7 2.0184 -0.6906 1.1962 16 6 2.1470 -0.0182 2.3571 17 8 1.8584 1.1610 2.4116 18 6 2.6409 -0.7159 3.5656 19 7 2.9505 -2.0056 3.5011 20 6 3.3975 -2.6613 4.5488 21 6 3.5528 -2.0274 5.7738 22 17 4.1383 -2.9098 7.1494 23 6 3.2361 -0.6823 5.8879 24 6 2.7713 -0.0147 4.7640 25 17 2.3587 1.6695 4.8482 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.7517 -1.7715 -1.2055 30 1 1.6055 -0.2618 -2.1370 31 1 3.8532 0.4369 -1.3573 32 1 3.9995 -1.0729 -0.4259 33 1 3.4259 -1.7360 -3.1104 34 1 7.4715 -2.4893 -4.9625 35 1 2.2490 -1.6317 1.1527 36 1 3.6433 -3.7089 4.4563 37 1 3.3486 -0.1662 6.8299 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715700073.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:14:24 Heat of formation + Delta-G solvation = -17.648017 kcal Electronic energy + Delta-G solvation = -22946.456958 eV Core-core repulsion = 19196.304126 eV Total energy + Delta-G solvation = -3750.152832 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.060 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -41.95245 -40.38048 -38.09991 -37.81218 -37.69041 -36.20625 -34.07943 -33.59180 -32.76560 -31.72024 -29.71695 -26.27988 -25.60115 -24.98119 -23.24699 -22.55868 -21.59994 -19.85067 -19.33147 -18.52106 -17.92085 -17.18315 -16.70864 -16.52122 -16.35906 -15.89295 -15.53358 -15.30080 -15.13596 -14.84152 -14.59945 -14.30199 -14.10193 -13.88361 -13.46945 -13.29296 -13.03860 -13.02210 -12.95429 -12.66718 -12.42899 -12.33403 -12.14025 -11.99259 -11.84246 -11.73591 -11.38281 -10.98035 -10.88825 -10.61959 -10.28140 -9.99722 -9.30914 -8.02938 -5.37683 -0.91448 -0.32978 0.53773 0.96122 1.39417 1.44405 1.46312 1.51825 1.94127 2.41670 2.49692 2.87836 3.28317 3.31568 3.40636 3.46776 3.60163 3.76291 4.02182 4.09975 4.24880 4.31091 4.53440 4.55547 4.61990 4.76493 4.86227 4.91605 5.00643 5.19069 5.25689 5.33961 5.51411 5.74089 6.16701 6.20654 6.50051 7.06756 7.07765 7.82294 8.04094 9.18824 Molecular weight = 331.06amu Principal moments of inertia in cm(-1) A = 0.012465 B = 0.002920 C = 0.002561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2245.779492 B = 9586.362041 C =10931.529640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.149 3.851 3 H 0.076 0.924 4 C -0.123 4.123 5 C 0.155 3.845 6 N -0.757 5.757 7 C -0.241 4.241 8 H 0.048 0.952 9 C -0.066 4.066 10 N -0.986 5.986 11 Si 0.963 3.037 12 H -0.277 1.277 13 H -0.295 1.295 14 H -0.245 1.245 15 N -0.694 5.694 16 C 0.560 3.440 17 O -0.537 6.537 18 C 0.074 3.926 19 N -0.439 5.439 20 C 0.119 3.881 21 C -0.053 4.053 22 Cl -0.017 7.017 23 C -0.061 4.061 24 C -0.039 4.039 25 Cl -0.012 7.012 26 H 0.082 0.918 27 H 0.069 0.931 28 H 0.050 0.950 29 H 0.084 0.916 30 H 0.094 0.906 31 H 0.013 0.987 32 H 0.021 0.979 33 H 0.369 0.631 34 H 0.259 0.741 35 H 0.415 0.585 36 H 0.206 0.794 37 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.563 -0.909 24.553 29.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.044 3.956 3 H 0.095 0.905 4 C -0.161 4.161 5 C 0.029 3.971 6 N -0.403 5.403 7 C -0.372 4.372 8 H 0.066 0.934 9 C -0.257 4.257 10 N -0.636 5.636 11 Si 0.789 3.211 12 H -0.203 1.203 13 H -0.222 1.222 14 H -0.169 1.169 15 N -0.346 5.346 16 C 0.344 3.656 17 O -0.414 6.414 18 C -0.064 4.064 19 N -0.150 5.150 20 C -0.042 4.042 21 C -0.083 4.083 22 Cl 0.012 6.988 23 C -0.087 4.087 24 C -0.069 4.069 25 Cl 0.017 6.983 26 H 0.101 0.899 27 H 0.088 0.912 28 H 0.070 0.930 29 H 0.103 0.897 30 H 0.113 0.887 31 H 0.031 0.969 32 H 0.039 0.961 33 H 0.203 0.797 34 H 0.067 0.933 35 H 0.252 0.748 36 H 0.223 0.777 37 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -15.675 -0.328 23.917 28.598 hybrid contribution 0.431 -0.299 0.072 0.529 sum -15.244 -0.627 23.990 28.430 Atomic orbital electron populations 1.22078 0.93028 1.03056 1.02807 1.20978 0.95233 0.96679 0.82674 0.90545 1.21984 0.93962 1.02316 0.97873 1.20746 0.93775 0.94411 0.88169 1.42661 1.03483 1.66485 1.27647 1.19014 0.84016 1.28239 1.05924 0.93365 1.25613 0.97715 1.01978 1.00417 1.69904 1.14401 1.49818 1.29477 0.85302 0.79050 0.77870 0.78899 1.20337 1.22221 1.16865 1.45971 1.64972 1.14958 1.08677 1.17870 0.78443 0.86080 0.83172 1.90864 1.50630 1.15216 1.84691 1.21149 1.00703 0.90889 0.93665 1.67868 1.09511 1.06419 1.31199 1.23477 0.93209 1.02112 0.85427 1.22316 1.00994 0.93205 0.91784 1.98438 1.85932 1.74297 1.40126 1.21749 0.95029 0.92651 0.99277 1.21999 1.01163 0.89292 0.94491 1.98447 1.91013 1.10678 1.98170 0.89923 0.91181 0.93047 0.89714 0.88719 0.96937 0.96132 0.79728 0.93251 0.74819 0.77706 0.79606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.92 9.48 71.98 0.68 -2.24 16 2 C 0.15 3.60 2.57 44.99 0.12 3.72 16 3 H 0.08 2.13 7.58 -2.39 -0.02 2.12 16 4 C -0.12 -3.24 4.87 30.59 0.15 -3.09 16 5 C 0.16 5.89 6.15 86.38 0.53 6.42 16 6 N -0.76 -35.35 5.41 -343.44 -1.86 -37.21 16 7 C -0.24 -14.07 10.47 84.04 0.88 -13.19 16 8 H 0.05 3.13 8.06 -2.91 -0.02 3.11 16 9 C -0.07 -3.92 5.50 84.86 0.47 -3.46 16 10 N -0.99 -63.95 13.97 21.65 0.30 -63.64 16 11 Si 0.96 44.96 27.73 68.60 1.90 46.86 16 12 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 13 H -0.30 -13.97 7.11 99.48 0.71 -13.26 16 14 H -0.24 -10.01 6.52 99.48 0.65 -9.36 16 15 N -0.69 -17.25 4.52 -445.23 -2.01 -19.27 16 16 C 0.56 15.28 7.77 86.84 0.67 15.96 16 17 O -0.54 -16.84 13.60 -3.82 -0.05 -16.89 16 18 C 0.07 1.75 6.75 41.89 0.28 2.03 16 19 N -0.44 -9.13 9.54 -184.75 -1.76 -10.89 16 20 C 0.12 1.79 10.98 84.89 0.93 2.72 16 21 C -0.05 -0.71 6.35 22.51 0.14 -0.57 16 22 Cl -0.02 -0.18 28.99 -2.72 -0.08 -0.26 16 23 C -0.06 -0.87 9.78 22.49 0.22 -0.65 16 24 C -0.04 -0.80 6.37 22.68 0.14 -0.65 16 25 Cl -0.01 -0.28 26.03 -2.72 -0.07 -0.35 16 26 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 27 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 28 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 29 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 30 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 31 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 32 H 0.02 0.81 7.75 -2.39 -0.02 0.80 16 33 H 0.37 15.92 5.53 -92.71 -0.51 15.41 16 34 H 0.26 15.89 8.31 -92.71 -0.77 15.12 16 35 H 0.41 9.67 7.93 -92.71 -0.74 8.94 16 36 H 0.21 1.88 8.06 -2.91 -0.02 1.86 16 37 H 0.19 1.68 8.06 -2.91 -0.02 1.65 16 Total: -1.00 -73.27 347.69 1.42 -71.85 By element: Atomic # 1 Polarization: 22.99 SS G_CDS: -0.18 Total: 22.81 kcal Atomic # 6 Polarization: 1.76 SS G_CDS: 5.22 Total: 6.98 kcal Atomic # 7 Polarization: -125.68 SS G_CDS: -5.33 Total: -131.01 kcal Atomic # 8 Polarization: -16.84 SS G_CDS: -0.05 Total: -16.89 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 1.90 Total: 46.86 kcal Atomic # 17 Polarization: -0.46 SS G_CDS: -0.15 Total: -0.61 kcal Total: -73.27 1.42 -71.85 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715700073.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.206 kcal (2) G-P(sol) polarization free energy of solvation -73.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds