Wall clock time and date at job start Tue Mar 31 2020 16:47:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86799 * 119.99648 * 2 1 4 4 H 1.48508 * 109.47333 * 245.29422 * 3 2 1 5 5 H 1.48504 * 109.47487 * 5.29043 * 3 2 1 6 6 H 1.48496 * 109.47478 * 125.29053 * 3 2 1 7 7 C 1.38804 * 120.00008 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00186 * 345.60773 * 7 2 1 9 9 N 1.36945 * 119.99858 * 165.61387 * 7 2 1 10 10 C 1.47024 * 125.64529 * 348.96917 * 9 7 2 11 11 C 1.54321 * 107.26902 * 181.02795 * 10 9 7 12 12 C 1.55155 * 102.94327 * 22.18783 * 11 10 9 13 13 O 1.42903 * 111.00134 * 82.57465 * 12 11 10 14 14 C 1.53002 * 111.00656 * 206.38710 * 12 11 10 15 15 N 1.46502 * 109.47330 * 180.02562 * 14 12 11 16 16 C 1.34776 * 120.00097 * 180.02562 * 15 14 12 17 17 O 1.21632 * 120.00000 * 359.97438 * 16 15 14 18 18 C 1.47148 * 120.00088 * 179.97438 * 16 15 14 19 19 N 1.30559 * 125.52767 * 179.97438 * 18 16 15 20 20 C 1.30669 * 115.92854 * 180.02562 * 19 18 16 21 21 C 1.34432 * 115.74245 * 359.97438 * 20 19 18 22 22 Cl 1.73603 * 125.46376 * 179.97438 * 21 20 19 23 23 S 1.71075 * 109.07052 * 359.73316 * 21 20 19 24 24 C 1.47423 * 125.64835 * 168.66524 * 9 7 2 25 25 H 0.97003 * 120.00039 * 174.92649 * 1 2 3 26 26 H 1.09007 * 109.87907 * 300.43980 * 10 9 7 27 27 H 1.08997 * 109.88679 * 61.60513 * 10 9 7 28 28 H 1.08998 * 110.72053 * 140.55626 * 11 10 9 29 29 H 1.09003 * 110.71906 * 263.64965 * 11 10 9 30 30 H 0.96703 * 113.99934 * 179.97438 * 13 12 11 31 31 H 1.09008 * 109.46882 * 300.00027 * 14 12 11 32 32 H 1.08997 * 109.46915 * 60.00283 * 14 12 11 33 33 H 0.96998 * 119.99681 * 359.97438 * 15 14 12 34 34 H 1.08001 * 122.12397 * 180.02562 * 20 19 18 35 35 H 1.09002 * 110.36342 * 274.74512 * 24 9 7 36 36 H 1.08997 * 110.36760 * 37.06374 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.0044 1.7540 -1.2720 5 1 1.2902 2.7435 0.1291 6 1 3.1981 1.6422 1.1427 7 6 2.0102 -1.2021 0.0005 8 1 1.4957 -2.1226 0.2334 9 7 3.3475 -1.2208 -0.2941 10 6 4.1190 -0.0975 -0.8461 11 6 5.5699 -0.5878 -1.0360 12 6 5.4089 -2.1291 -1.1111 13 8 5.0402 -2.5420 -2.4286 14 6 6.6864 -2.8369 -0.6552 15 7 6.4980 -4.2873 -0.7399 16 6 7.4980 -5.1185 -0.3856 17 8 8.5570 -4.6646 0.0041 18 6 7.3086 -6.5753 -0.4701 19 7 8.2003 -7.4758 -0.1563 20 6 7.8318 -8.7207 -0.3041 21 6 6.5812 -8.9092 -0.7598 22 17 5.8359 -10.4503 -1.0483 23 16 5.8396 -7.3869 -1.0035 24 6 4.2531 -2.3685 -0.1045 25 1 -0.4850 -0.8368 -0.0743 26 1 3.7005 0.2030 -1.8067 27 1 4.0993 0.7425 -0.1518 28 1 5.9903 -0.1983 -1.9632 29 1 6.1878 -0.3029 -0.1844 30 1 4.9284 -3.4977 -2.5244 31 1 7.5153 -2.5403 -1.2981 32 1 6.9080 -2.5585 0.3751 33 1 5.6533 -4.6493 -1.0502 34 1 8.4898 -9.5456 -0.0740 35 1 4.6339 -2.3865 0.9167 36 1 3.7373 -3.3007 -0.3344 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716922725.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:47:24 Heat of formation + Delta-G solvation = 5.466992 kcal Electronic energy + Delta-G solvation = -23407.502184 eV Core-core repulsion = 19660.395400 eV Total energy + Delta-G solvation = -3747.106784 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.054 amu Computer time = 1.62 seconds Orbital eigenvalues (eV) -40.75785 -39.80745 -38.67965 -37.47440 -35.61789 -34.50211 -32.45145 -31.12936 -30.08043 -28.93393 -27.17283 -25.67478 -23.56520 -22.19601 -21.12478 -20.48915 -20.19874 -19.60123 -17.86352 -17.57090 -16.60547 -16.56287 -16.11555 -15.78159 -15.25103 -14.99963 -14.69092 -14.48628 -14.30587 -13.84707 -13.61501 -13.31273 -13.05615 -12.87577 -12.65592 -12.31152 -11.95804 -11.57258 -11.46692 -11.34368 -11.10462 -11.06082 -10.75886 -10.18844 -10.08796 -10.07715 -9.93961 -9.62680 -9.39965 -9.36025 -9.01834 -8.73734 -7.08022 -6.34877 -3.27192 -0.50188 0.12163 0.78951 1.42610 1.73727 2.34199 2.71932 3.41144 3.47340 3.69561 3.85561 4.14985 4.24459 4.41959 4.51155 4.60098 4.77177 5.00485 5.10357 5.26857 5.37571 5.49614 5.54074 5.70867 5.82282 5.95327 6.03931 6.17676 6.23927 6.46202 6.69596 6.73081 7.00288 7.55846 7.60738 7.68543 8.28485 8.98876 9.50185 10.16130 11.15792 Molecular weight = 331.05amu Principal moments of inertia in cm(-1) A = 0.019523 B = 0.002851 C = 0.002576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1433.871474 B = 9819.760812 C =10867.371042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C -0.020 4.020 3 Si 1.070 2.930 4 H -0.285 1.285 5 H -0.302 1.302 6 H -0.297 1.297 7 C -0.323 4.323 8 H 0.077 0.923 9 N -0.605 5.605 10 C 0.114 3.886 11 C -0.112 4.112 12 C 0.100 3.900 13 O -0.533 6.533 14 C 0.105 3.895 15 N -0.716 5.716 16 C 0.597 3.403 17 O -0.491 6.491 18 C 0.001 3.999 19 N -0.387 5.387 20 C 0.047 3.953 21 C -0.202 4.202 22 Cl 0.019 6.981 23 S 0.239 5.761 24 C 0.116 3.884 25 H 0.262 0.738 26 H 0.051 0.949 27 H 0.031 0.969 28 H 0.083 0.917 29 H 0.084 0.916 30 H 0.365 0.635 31 H 0.085 0.915 32 H 0.089 0.911 33 H 0.397 0.603 34 H 0.190 0.810 35 H 0.034 0.966 36 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.836 -18.062 -3.711 23.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.219 4.219 3 Si 0.904 3.096 4 H -0.212 1.212 5 H -0.230 1.230 6 H -0.226 1.226 7 C -0.450 4.450 8 H 0.095 0.905 9 N -0.333 5.333 10 C -0.011 4.011 11 C -0.150 4.150 12 C 0.058 3.942 13 O -0.338 6.338 14 C -0.018 4.018 15 N -0.370 5.370 16 C 0.378 3.622 17 O -0.364 6.364 18 C -0.275 4.275 19 N -0.103 5.103 20 C -0.112 4.112 21 C -0.352 4.352 22 Cl 0.047 6.953 23 S 0.492 5.508 24 C -0.011 4.011 25 H 0.071 0.929 26 H 0.069 0.931 27 H 0.048 0.952 28 H 0.101 0.899 29 H 0.103 0.897 30 H 0.211 0.789 31 H 0.103 0.897 32 H 0.107 0.893 33 H 0.232 0.768 34 H 0.207 0.793 35 H 0.052 0.948 36 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 14.793 -14.996 -3.627 21.374 hybrid contribution 0.222 -3.701 0.169 3.711 sum 15.015 -18.697 -3.458 24.227 Atomic orbital electron populations 1.70901 1.05719 1.29255 1.50936 1.25862 0.96459 1.00982 0.98648 0.83839 0.73211 0.76181 0.76331 1.21222 1.22985 1.22616 1.20136 0.81589 0.96071 1.47229 0.90503 1.44665 1.05698 1.08360 1.74535 1.21986 0.89773 0.91770 0.97548 1.22580 0.98554 0.91212 1.02654 1.22783 0.91834 0.95757 0.83877 1.86659 1.91731 1.26891 1.28475 1.22178 0.99081 0.77046 1.03543 1.45734 1.15994 1.07599 1.67674 1.16519 0.84468 0.82427 0.78811 1.90893 1.25596 1.75643 1.44234 1.27564 0.93220 0.98908 1.07797 1.66780 1.30806 0.99457 1.13286 1.21984 0.93626 0.94470 1.01145 1.26635 0.99795 0.95433 1.13331 1.98414 1.80460 1.22091 1.94303 1.84161 1.15284 0.94183 1.57138 1.22221 0.90526 0.92846 0.95523 0.92859 0.93062 0.95180 0.89853 0.89702 0.78897 0.89670 0.89306 0.76795 0.79298 0.94821 0.93715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 37. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.86 13.70 55.49 0.76 -28.10 16 2 C -0.02 -0.58 5.50 -17.43 -0.10 -0.68 16 3 Si 1.07 26.49 24.53 -169.99 -4.17 22.32 16 4 H -0.28 -6.45 5.43 56.52 0.31 -6.14 16 5 H -0.30 -7.66 7.11 56.52 0.40 -7.26 16 6 H -0.30 -7.05 6.84 56.52 0.39 -6.66 16 7 C -0.32 -9.04 10.56 -15.06 -0.16 -9.20 16 8 H 0.08 2.25 8.06 -52.49 -0.42 1.83 16 9 N -0.61 -14.21 3.32 -169.94 -0.56 -14.77 16 10 C 0.11 2.40 4.61 -3.06 -0.01 2.39 16 11 C -0.11 -1.74 6.15 -24.90 -0.15 -1.89 16 12 C 0.10 1.43 0.97 -88.35 -0.09 1.35 16 13 O -0.53 -7.71 13.21 -35.23 -0.47 -8.17 16 14 C 0.10 1.22 4.89 -4.04 -0.02 1.20 16 15 N -0.72 -7.41 5.20 -61.47 -0.32 -7.73 16 16 C 0.60 7.30 7.80 -12.64 -0.10 7.20 16 17 O -0.49 -7.76 17.07 5.25 0.09 -7.67 16 18 C 0.00 0.01 7.45 -14.48 -0.11 -0.10 16 19 N -0.39 -4.45 10.59 -11.50 -0.12 -4.58 16 20 C 0.05 0.41 11.21 -19.39 -0.22 0.19 16 21 C -0.20 -1.59 6.95 29.39 0.20 -1.39 16 22 Cl 0.02 0.13 29.30 -51.86 -1.52 -1.39 16 23 S 0.24 1.83 22.30 -107.50 -2.40 -0.57 16 24 C 0.12 2.07 6.23 -2.41 -0.02 2.06 16 25 H 0.26 8.03 8.73 -40.82 -0.36 7.67 16 26 H 0.05 1.17 6.79 -51.93 -0.35 0.82 16 27 H 0.03 0.67 3.82 -51.93 -0.20 0.47 16 28 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 29 H 0.08 1.13 8.04 -51.93 -0.42 0.71 16 30 H 0.36 3.76 7.69 45.56 0.35 4.11 16 31 H 0.09 0.96 8.14 -51.92 -0.42 0.54 16 32 H 0.09 1.05 8.07 -51.93 -0.42 0.63 16 33 H 0.40 3.32 6.42 -40.82 -0.26 3.06 16 34 H 0.19 1.13 8.06 -52.49 -0.42 0.71 16 35 H 0.03 0.60 7.99 -51.93 -0.41 0.18 16 36 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 329.00 15.07 4.96 4.96 Total: -1.00 -35.21 329.00 -7.60 -42.81 By element: Atomic # 1 Polarization: 4.86 SS G_CDS: -3.09 Total: 1.77 kcal Atomic # 6 Polarization: 1.89 SS G_CDS: -0.76 Total: 1.13 kcal Atomic # 7 Polarization: -54.93 SS G_CDS: -0.25 Total: -55.18 kcal Atomic # 8 Polarization: -15.46 SS G_CDS: -0.38 Total: -15.84 kcal Atomic # 14 Polarization: 26.49 SS G_CDS: -4.17 Total: 22.32 kcal Atomic # 16 Polarization: 1.83 SS G_CDS: -2.40 Total: -0.57 kcal Atomic # 17 Polarization: 0.13 SS G_CDS: -1.52 Total: -1.39 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -35.21 -7.60 -42.81 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716922725.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.279 kcal (2) G-P(sol) polarization free energy of solvation -35.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.812 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.63 seconds