Wall clock time and date at job start Tue Mar 31 2020 16:38:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86788 * 120.00161 * 2 1 4 4 H 1.48499 * 109.47200 * 269.99806 * 3 2 1 5 5 H 1.48497 * 109.47365 * 30.00326 * 3 2 1 6 6 H 1.48505 * 109.47238 * 150.00180 * 3 2 1 7 7 C 1.38810 * 119.99510 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00117 * 180.02562 * 7 2 1 9 9 N 1.36940 * 120.00479 * 359.97438 * 7 2 1 10 10 C 1.46493 * 120.00175 * 180.02562 * 9 7 2 11 11 C 1.53003 * 109.47188 * 180.02562 * 10 9 7 12 12 H 1.09002 * 109.50788 * 60.10435 * 11 10 9 13 13 C 1.53714 * 109.48958 * 180.36063 * 11 10 9 14 14 N 1.47149 * 108.16158 * 172.39917 * 13 11 10 15 15 C 1.34785 * 120.97684 * 129.43867 * 14 13 11 16 16 O 1.21630 * 120.00183 * 352.18968 * 15 14 13 17 17 C 1.47242 * 119.99721 * 171.91959 * 15 14 13 18 18 C 1.35146 * 123.13727 * 172.24860 * 17 15 14 19 19 S 1.70932 * 108.86420 * 179.97438 * 18 17 15 20 20 C 1.70761 * 91.14604 * 359.97438 * 19 18 17 21 21 Cl 1.73603 * 124.72534 * 179.97438 * 20 19 18 22 22 N 1.28770 * 110.54931 * 359.75398 * 20 19 18 23 23 C 1.47142 * 118.03894 * 309.16141 * 14 13 11 24 24 C 1.53294 * 108.38645 * 50.78676 * 23 14 13 25 25 O 1.42957 * 109.51423 * 300.00463 * 11 10 9 26 26 H 0.97006 * 119.99925 * 0.02562 * 1 2 3 27 27 H 0.97006 * 119.99381 * 0.02562 * 9 7 2 28 28 H 1.09000 * 109.47542 * 60.00588 * 10 9 7 29 29 H 1.09001 * 109.47232 * 300.00200 * 10 9 7 30 30 H 1.08999 * 109.83171 * 52.71725 * 13 11 10 31 31 H 1.08999 * 109.74469 * 292.03107 * 13 11 10 32 32 H 1.07997 * 125.56997 * 0.02562 * 18 17 15 33 33 H 1.08997 * 109.68427 * 170.51147 * 23 14 13 34 34 H 1.09006 * 109.68324 * 291.02467 * 23 14 13 35 35 H 1.09003 * 109.51194 * 67.62353 * 24 23 14 36 36 H 1.09002 * 109.51556 * 187.77392 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4478 2.6526 0.7001 6 1 3.5478 1.4400 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0901 -1.2023 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 2.0579 -3.6568 -0.0005 11 6 1.0636 -4.8197 -0.0012 12 1 0.4382 -4.7634 -0.8921 13 6 1.8317 -6.1512 0.0079 14 7 0.8595 -7.2403 0.1921 15 6 0.8486 -8.3071 -0.6316 16 8 1.5508 -8.3159 -1.6247 17 6 -0.0089 -9.4644 -0.3260 18 6 -0.1862 -10.4981 -1.1783 19 16 -1.2445 -11.6318 -0.4597 20 6 -1.3895 -10.6617 0.9382 21 17 -2.3552 -11.0624 2.3241 22 7 -0.6792 -9.5939 0.8230 23 6 -0.0964 -7.1333 1.3056 24 6 -0.7671 -5.7566 1.2365 25 8 0.2407 -4.7451 1.1654 26 1 -0.4850 0.8401 -0.0004 27 1 0.3554 -2.3880 -0.0005 28 1 2.6845 -3.7147 0.8895 29 1 2.6846 -3.7146 -0.8905 30 1 2.5502 -6.1580 0.8275 31 1 2.3539 -6.2815 -0.9399 32 1 0.2674 -10.5929 -2.1538 33 1 -0.8515 -7.9144 1.2176 34 1 0.4312 -7.2381 2.2537 35 1 -1.3993 -5.7037 0.3501 36 1 -1.3752 -5.6027 2.1279 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717182454.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:38:17 Heat of formation + Delta-G solvation = 1.617929 kcal Electronic energy + Delta-G solvation = -23455.624503 eV Core-core repulsion = 19708.350811 eV Total energy + Delta-G solvation = -3747.273691 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.054 amu Computer time = 1.58 seconds Orbital eigenvalues (eV) -41.21486 -39.49332 -38.17474 -37.45180 -35.02649 -34.35178 -32.16333 -31.08511 -30.13934 -28.25449 -26.86518 -25.15534 -23.44291 -23.16155 -21.74558 -20.70984 -20.12560 -18.80990 -17.18380 -17.13120 -16.65623 -16.24316 -16.08557 -15.76252 -15.15732 -14.80493 -14.53559 -14.43699 -14.30754 -13.92612 -13.33248 -13.07810 -12.79716 -12.59643 -12.40911 -12.36136 -12.17594 -11.94598 -11.52087 -10.93483 -10.87657 -10.75734 -10.58774 -10.51444 -10.33221 -10.07081 -9.85779 -9.70764 -9.56877 -9.50201 -8.82384 -8.49406 -6.84524 -5.68615 -2.97154 -0.17791 0.09448 0.85489 1.22098 1.32397 2.75857 2.94135 3.48784 3.53358 3.55520 3.69424 4.07526 4.43224 4.59650 4.62895 4.84928 4.97743 5.13354 5.23306 5.31787 5.39124 5.63650 5.67369 5.80650 5.90912 5.94179 6.03446 6.32137 6.34748 6.58555 6.60744 6.74496 7.18309 7.54653 7.75781 7.85546 8.49573 9.61175 10.18934 10.55049 11.54248 Molecular weight = 331.05amu Principal moments of inertia in cm(-1) A = 0.027202 B = 0.002445 C = 0.002307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.100167 B =11447.981040 C =12135.364456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.015 4.015 3 Si 0.908 3.092 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.238 4.238 8 H 0.071 0.929 9 N -0.726 5.726 10 C 0.164 3.836 11 C 0.075 3.925 12 H 0.063 0.937 13 C 0.084 3.916 14 N -0.592 5.592 15 C 0.593 3.407 16 O -0.531 6.531 17 C 0.026 3.974 18 C -0.221 4.221 19 S 0.288 5.712 20 C 0.039 3.961 21 Cl 0.037 6.963 22 N -0.424 5.424 23 C 0.052 3.948 24 C 0.046 3.954 25 O -0.358 6.358 26 H 0.254 0.746 27 H 0.388 0.612 28 H 0.029 0.971 29 H 0.036 0.964 30 H 0.081 0.919 31 H 0.103 0.897 32 H 0.200 0.800 33 H 0.135 0.865 34 H 0.075 0.925 35 H 0.050 0.950 36 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.818 -30.173 1.479 30.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.211 4.211 3 Si 0.739 3.261 4 H -0.218 1.218 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.369 4.369 8 H 0.088 0.912 9 N -0.370 5.370 10 C 0.035 3.965 11 C 0.016 3.984 12 H 0.081 0.919 13 C -0.038 4.038 14 N -0.324 5.324 15 C 0.378 3.622 16 O -0.408 6.408 17 C -0.108 4.108 18 C -0.363 4.363 19 S 0.541 5.459 20 C -0.264 4.264 21 Cl 0.065 6.935 22 N -0.143 5.143 23 C -0.071 4.071 24 C -0.033 4.033 25 O -0.276 6.276 26 H 0.064 0.936 27 H 0.222 0.778 28 H 0.046 0.954 29 H 0.053 0.947 30 H 0.100 0.900 31 H 0.121 0.879 32 H 0.217 0.783 33 H 0.152 0.848 34 H 0.094 0.906 35 H 0.068 0.932 36 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -5.783 -30.498 1.411 31.074 hybrid contribution 0.501 1.532 0.003 1.612 sum -5.282 -28.966 1.414 29.478 Atomic orbital electron populations 1.69684 1.05108 1.25507 1.57757 1.24744 0.95529 0.97659 1.03124 0.86172 0.78627 0.83843 0.77446 1.21779 1.21810 1.20771 1.19232 0.91011 0.84104 1.42594 0.91151 1.42214 1.06087 0.99438 1.89288 1.20625 0.92363 0.84724 0.98759 1.22853 0.92929 0.93976 0.88661 0.91900 1.22536 0.91344 0.85671 1.04279 1.47949 1.34614 1.19760 1.30073 1.16986 0.81355 0.81101 0.82748 1.90834 1.42881 1.80675 1.26404 1.20254 1.02372 0.98440 0.89763 1.26827 1.04464 0.97884 1.07114 1.83039 1.37470 1.19794 1.05599 1.27449 1.03483 0.97337 0.98096 1.98462 1.66089 1.91399 1.37564 1.66850 1.07786 1.18409 1.21302 1.23340 0.94124 1.00440 0.89168 1.22980 0.90875 0.86870 1.02527 1.88153 1.45984 1.50846 1.42596 0.93595 0.77810 0.95357 0.94686 0.90029 0.87906 0.78257 0.84843 0.90642 0.93213 0.87833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 37. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.14 13.06 55.49 0.72 -28.42 16 2 C -0.01 -0.44 5.50 -17.43 -0.10 -0.53 16 3 Si 0.91 23.01 29.55 -169.99 -5.02 17.98 16 4 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 5 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 6 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 7 C -0.24 -6.92 9.99 -15.06 -0.15 -7.07 16 8 H 0.07 1.96 7.83 -52.49 -0.41 1.55 16 9 N -0.73 -19.45 5.49 -59.91 -0.33 -19.78 16 10 C 0.16 3.47 5.96 -4.04 -0.02 3.45 16 11 C 0.07 1.35 2.88 -26.36 -0.08 1.27 16 12 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 13 C 0.08 1.28 5.97 -3.32 -0.02 1.26 16 14 N -0.59 -8.46 3.01 -173.36 -0.52 -8.98 16 15 C 0.59 8.41 7.66 -12.60 -0.10 8.31 16 16 O -0.53 -8.73 16.21 5.25 0.09 -8.64 16 17 C 0.03 0.29 6.46 -84.52 -0.55 -0.26 16 18 C -0.22 -1.77 10.62 29.63 0.31 -1.45 16 19 S 0.29 1.53 22.96 -107.50 -2.47 -0.94 16 20 C 0.04 0.31 7.98 51.48 0.41 0.72 16 21 Cl 0.04 0.25 29.33 -51.86 -1.52 -1.27 16 22 N -0.42 -4.36 6.86 -9.45 -0.06 -4.43 16 23 C 0.05 0.67 6.11 -3.54 -0.02 0.64 16 24 C 0.05 0.65 6.99 37.31 0.26 0.91 16 25 O -0.36 -6.71 10.13 -35.23 -0.36 -7.06 16 26 H 0.25 7.65 8.31 -40.82 -0.34 7.31 16 27 H 0.39 11.06 7.54 -40.82 -0.31 10.75 16 28 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 29 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.08 1.18 8.14 -51.93 -0.42 0.75 16 31 H 0.10 1.57 7.06 -51.93 -0.37 1.20 16 32 H 0.20 1.33 8.04 -52.49 -0.42 0.91 16 33 H 0.13 1.56 4.33 -62.28 -0.27 1.30 16 34 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 35 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.10 1.28 8.14 -51.93 -0.42 0.86 16 LS Contribution 334.16 15.07 5.04 5.04 Total: -1.00 -34.63 334.16 -8.36 -42.99 By element: Atomic # 1 Polarization: 10.12 SS G_CDS: -3.87 Total: 6.25 kcal Atomic # 6 Polarization: 7.30 SS G_CDS: -0.04 Total: 7.26 kcal Atomic # 7 Polarization: -61.41 SS G_CDS: -0.19 Total: -61.60 kcal Atomic # 8 Polarization: -15.43 SS G_CDS: -0.27 Total: -15.70 kcal Atomic # 14 Polarization: 23.01 SS G_CDS: -5.02 Total: 17.98 kcal Atomic # 16 Polarization: 1.53 SS G_CDS: -2.47 Total: -0.94 kcal Atomic # 17 Polarization: 0.25 SS G_CDS: -1.52 Total: -1.27 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -34.63 -8.36 -42.99 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717182454.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.605 kcal (2) G-P(sol) polarization free energy of solvation -34.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.988 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.58 seconds