Wall clock time and date at job start Tue Mar 31 2020 16:38:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86788 * 120.00161 * 2 1 4 4 H 1.48499 * 109.47200 * 269.99806 * 3 2 1 5 5 H 1.48497 * 109.47365 * 30.00326 * 3 2 1 6 6 H 1.48505 * 109.47238 * 150.00180 * 3 2 1 7 7 C 1.38810 * 119.99510 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00117 * 180.02562 * 7 2 1 9 9 N 1.36940 * 120.00479 * 359.97438 * 7 2 1 10 10 C 1.46493 * 120.00175 * 180.02562 * 9 7 2 11 11 C 1.53003 * 109.47188 * 180.02562 * 10 9 7 12 12 H 1.09002 * 109.50788 * 60.10435 * 11 10 9 13 13 C 1.53714 * 109.48958 * 180.36063 * 11 10 9 14 14 N 1.47149 * 108.16158 * 172.39917 * 13 11 10 15 15 C 1.34785 * 120.97684 * 129.43867 * 14 13 11 16 16 O 1.21630 * 120.00183 * 352.18968 * 15 14 13 17 17 C 1.47242 * 119.99721 * 171.91959 * 15 14 13 18 18 C 1.35146 * 123.13727 * 172.24860 * 17 15 14 19 19 S 1.70932 * 108.86420 * 179.97438 * 18 17 15 20 20 C 1.70761 * 91.14604 * 359.97438 * 19 18 17 21 21 Cl 1.73603 * 124.72534 * 179.97438 * 20 19 18 22 22 N 1.28770 * 110.54931 * 359.75398 * 20 19 18 23 23 C 1.47142 * 118.03894 * 309.16141 * 14 13 11 24 24 C 1.53294 * 108.38645 * 50.78676 * 23 14 13 25 25 O 1.42957 * 109.51423 * 300.00463 * 11 10 9 26 26 H 0.97006 * 119.99925 * 0.02562 * 1 2 3 27 27 H 0.97006 * 119.99381 * 0.02562 * 9 7 2 28 28 H 1.09000 * 109.47542 * 60.00588 * 10 9 7 29 29 H 1.09001 * 109.47232 * 300.00200 * 10 9 7 30 30 H 1.08999 * 109.83171 * 52.71725 * 13 11 10 31 31 H 1.08999 * 109.74469 * 292.03107 * 13 11 10 32 32 H 1.07997 * 125.56997 * 0.02562 * 18 17 15 33 33 H 1.08997 * 109.68427 * 170.51147 * 23 14 13 34 34 H 1.09006 * 109.68324 * 291.02467 * 23 14 13 35 35 H 1.09003 * 109.51194 * 67.62353 * 24 23 14 36 36 H 1.09002 * 109.51556 * 187.77392 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4478 2.6526 0.7001 6 1 3.5478 1.4400 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0901 -1.2023 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 2.0579 -3.6568 -0.0005 11 6 1.0636 -4.8197 -0.0012 12 1 0.4382 -4.7634 -0.8921 13 6 1.8317 -6.1512 0.0079 14 7 0.8595 -7.2403 0.1921 15 6 0.8486 -8.3071 -0.6316 16 8 1.5508 -8.3159 -1.6247 17 6 -0.0089 -9.4644 -0.3260 18 6 -0.1862 -10.4981 -1.1783 19 16 -1.2445 -11.6318 -0.4597 20 6 -1.3895 -10.6617 0.9382 21 17 -2.3552 -11.0624 2.3241 22 7 -0.6792 -9.5939 0.8230 23 6 -0.0964 -7.1333 1.3056 24 6 -0.7671 -5.7566 1.2365 25 8 0.2407 -4.7451 1.1654 26 1 -0.4850 0.8401 -0.0004 27 1 0.3554 -2.3880 -0.0005 28 1 2.6845 -3.7147 0.8895 29 1 2.6846 -3.7146 -0.8905 30 1 2.5502 -6.1580 0.8275 31 1 2.3539 -6.2815 -0.9399 32 1 0.2674 -10.5929 -2.1538 33 1 -0.8515 -7.9144 1.2176 34 1 0.4312 -7.2381 2.2537 35 1 -1.3993 -5.7037 0.3501 36 1 -1.3752 -5.6027 2.1279 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717182454.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:38:15 Heat of formation + Delta-G solvation = 23.298430 kcal Electronic energy + Delta-G solvation = -23454.684366 eV Core-core repulsion = 19708.350811 eV Total energy + Delta-G solvation = -3746.333554 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.054 amu Computer time = 1.76 seconds Orbital eigenvalues (eV) -41.24291 -40.10192 -38.93383 -37.37211 -36.41540 -36.28795 -35.23912 -33.32195 -29.95552 -29.17042 -28.16657 -26.60642 -24.43867 -24.15716 -22.99078 -21.95730 -21.02111 -19.12619 -18.94526 -18.31225 -17.93790 -17.70225 -16.94170 -16.83167 -16.16914 -15.87474 -15.74214 -15.49273 -15.30040 -14.78987 -14.76708 -14.39448 -14.13918 -13.91742 -13.86393 -13.43151 -13.23802 -12.59690 -12.55324 -12.45163 -12.25674 -12.06661 -11.81692 -11.47471 -11.39609 -11.21881 -11.15454 -11.00640 -10.89853 -10.05279 -9.30385 -8.92423 -8.45644 -7.77004 -4.10845 -1.65720 0.56922 0.79347 1.21189 1.68634 1.79545 1.92253 2.05034 2.11176 2.30133 2.46413 2.72383 3.23189 3.29621 3.35687 3.62300 3.76316 3.87288 3.88319 4.00222 4.08425 4.18700 4.26609 4.36952 4.41972 4.66190 4.67817 4.76850 4.97341 5.03536 5.29169 5.45675 5.85392 5.94938 6.08010 6.35815 6.65517 7.35044 7.86957 7.99149 8.71209 Molecular weight = 331.05amu Principal moments of inertia in cm(-1) A = 0.027202 B = 0.002445 C = 0.002307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.100167 B =11447.981040 C =12135.364456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.091 4.091 3 Si 1.043 2.957 4 H -0.248 1.248 5 H -0.270 1.270 6 H -0.197 1.197 7 C 0.384 3.616 8 H 0.291 0.709 9 N -0.521 5.521 10 C 0.084 3.916 11 C 0.056 3.944 12 H 0.064 0.936 13 C 0.082 3.918 14 N -0.625 5.625 15 C 0.558 3.442 16 O -0.651 6.651 17 C -0.089 4.089 18 C -0.787 4.787 19 S -0.192 6.192 20 C -0.252 4.252 21 Cl -0.090 7.090 22 N -0.423 5.423 23 C 0.049 3.951 24 C 0.076 3.924 25 O -0.371 6.371 26 H 0.379 0.621 27 H 0.437 0.563 28 H 0.170 0.830 29 H 0.181 0.819 30 H 0.086 0.914 31 H 0.083 0.917 32 H 0.009 0.991 33 H 0.113 0.887 34 H 0.048 0.952 35 H 0.041 0.959 36 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.404 62.382 6.261 64.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.180 5.180 2 C -0.327 4.327 3 Si 0.854 3.146 4 H -0.171 1.171 5 H -0.194 1.194 6 H -0.118 1.118 7 C 0.201 3.799 8 H 0.306 0.694 9 N -0.110 5.110 10 C -0.037 4.037 11 C -0.003 4.003 12 H 0.082 0.918 13 C -0.041 4.041 14 N -0.360 5.360 15 C 0.362 3.638 16 O -0.542 6.542 17 C -0.232 4.232 18 C -0.926 4.926 19 S 0.031 5.969 20 C -0.522 4.522 21 Cl -0.064 7.064 22 N -0.142 5.142 23 C -0.075 4.075 24 C -0.001 4.001 25 O -0.290 6.290 26 H 0.199 0.801 27 H 0.278 0.722 28 H 0.187 0.813 29 H 0.198 0.802 30 H 0.104 0.896 31 H 0.102 0.898 32 H 0.028 0.972 33 H 0.130 0.870 34 H 0.067 0.933 35 H 0.060 0.940 36 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 14.903 61.573 6.407 63.674 hybrid contribution -0.811 -0.444 -0.689 1.153 sum 14.092 61.129 5.718 62.992 Atomic orbital electron populations 1.69727 1.10104 1.42193 0.95985 1.28986 0.97678 1.07642 0.98390 0.84051 0.79988 0.68421 0.82133 1.17147 1.19438 1.11758 1.27096 1.04079 0.81276 0.67486 0.69382 1.47281 1.15754 1.08307 1.39611 1.23122 0.93102 0.75724 1.11749 1.22894 0.93340 0.94467 0.89638 0.91766 1.22235 0.92116 0.86146 1.03586 1.47599 1.36542 1.20383 1.31428 1.17429 0.82263 0.82238 0.81880 1.90317 1.48940 1.83320 1.31635 1.17753 1.12375 0.99134 0.93986 1.19968 1.49413 1.14496 1.08689 1.79081 1.63459 1.36064 1.18265 1.22523 1.27916 1.06135 0.95646 1.97974 1.70967 1.93438 1.44012 1.64974 1.08024 1.19873 1.21333 1.23104 0.95365 1.01053 0.87954 1.22882 0.89161 0.85195 1.02905 1.87714 1.46854 1.51533 1.42904 0.80097 0.72155 0.81300 0.80226 0.89591 0.89849 0.97248 0.87019 0.93323 0.94029 0.85270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 48. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.56 7.99 13.06 21.65 0.28 8.27 16 2 C -0.09 1.99 5.50 84.86 0.47 2.46 16 3 Si 1.04 -21.66 29.55 68.60 2.03 -19.63 16 4 H -0.25 4.08 7.11 99.48 0.71 4.79 16 5 H -0.27 3.79 7.11 99.48 0.71 4.50 16 6 H -0.20 4.57 7.11 99.48 0.71 5.27 16 7 C 0.38 -10.28 9.99 84.03 0.84 -9.44 16 8 H 0.29 -11.80 7.83 -2.91 -0.02 -11.83 16 9 N -0.52 8.53 5.49 -343.46 -1.89 6.64 16 10 C 0.08 -0.83 5.96 86.38 0.51 -0.31 16 11 C 0.06 0.73 2.88 30.84 0.09 0.82 16 12 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 13 C 0.08 2.48 5.97 86.50 0.52 3.00 16 14 N -0.62 -32.51 3.01 -820.63 -2.47 -34.99 16 15 C 0.56 40.78 7.66 86.61 0.66 41.44 16 16 O -0.65 -49.97 16.21 -4.12 -0.07 -50.04 16 17 C -0.09 -7.76 6.46 40.52 0.26 -7.49 16 18 C -0.79 -75.66 10.62 67.11 0.71 -74.95 16 19 S -0.19 -16.87 22.96 -56.49 -1.30 -18.17 16 20 C -0.25 -20.70 7.98 130.69 1.04 -19.66 16 21 Cl -0.09 -6.03 29.33 -2.72 -0.08 -6.11 16 22 N -0.42 -34.29 6.86 -183.81 -1.26 -35.55 16 23 C 0.05 2.35 6.11 86.36 0.53 2.88 16 24 C 0.08 2.30 6.99 72.08 0.50 2.81 16 25 O -0.37 -6.34 10.13 -148.98 -1.51 -7.85 16 26 H 0.38 -5.89 8.31 -92.70 -0.77 -6.66 16 27 H 0.44 -4.86 7.54 -92.70 -0.70 -5.56 16 28 H 0.17 -2.61 8.14 -2.39 -0.02 -2.63 16 29 H 0.18 -2.99 8.14 -2.39 -0.02 -3.01 16 30 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 31 H 0.08 2.75 7.06 -2.39 -0.02 2.73 16 32 H 0.01 0.93 8.04 -2.91 -0.02 0.90 16 33 H 0.11 7.02 4.33 -22.83 -0.10 6.92 16 34 H 0.05 2.25 8.14 -2.38 -0.02 2.23 16 35 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 36 H 0.13 3.22 8.14 -2.39 -0.02 3.20 16 Total: -1.00 -210.76 334.16 0.23 -210.53 By element: Atomic # 1 Polarization: 4.98 SS G_CDS: 0.35 Total: 5.33 kcal Atomic # 6 Polarization: -64.58 SS G_CDS: 6.14 Total: -58.44 kcal Atomic # 7 Polarization: -50.29 SS G_CDS: -5.34 Total: -55.63 kcal Atomic # 8 Polarization: -56.31 SS G_CDS: -1.58 Total: -57.89 kcal Atomic # 14 Polarization: -21.66 SS G_CDS: 2.03 Total: -19.63 kcal Atomic # 16 Polarization: -16.87 SS G_CDS: -1.30 Total: -18.17 kcal Atomic # 17 Polarization: -6.03 SS G_CDS: -0.08 Total: -6.11 kcal Total: -210.76 0.23 -210.53 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717182454.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 233.828 kcal (2) G-P(sol) polarization free energy of solvation -210.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -210.529 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.76 seconds