Wall clock time and date at job start Tue Mar 31 2020 16:42:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86800 * 119.99935 * 2 1 4 4 H 1.48498 * 109.47531 * 269.99771 * 3 2 1 5 5 H 1.48496 * 109.47228 * 30.00387 * 3 2 1 6 6 H 1.48504 * 109.47053 * 150.00112 * 3 2 1 7 7 C 1.38814 * 120.00193 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00320 * 179.97438 * 7 2 1 9 9 N 1.36942 * 119.99816 * 0.02562 * 7 2 1 10 10 C 1.47582 * 134.49146 * 179.97438 * 9 7 2 11 11 C 1.53949 * 86.11438 * 155.36000 * 10 9 7 12 12 C 1.53010 * 113.73817 * 269.15504 * 11 10 9 13 13 C 1.53001 * 109.46799 * 172.64437 * 12 11 10 14 14 O 1.42895 * 109.47010 * 178.35173 * 13 12 11 15 15 N 1.46496 * 113.74080 * 137.95655 * 11 10 9 16 16 C 1.34776 * 119.99987 * 66.90088 * 15 11 10 17 17 O 1.21619 * 120.00276 * 354.79823 * 16 15 11 18 18 C 1.47229 * 119.99719 * 174.80100 * 16 15 11 19 19 N 1.30602 * 125.53454 * 359.69350 * 18 16 15 20 20 C 1.30732 * 115.90180 * 180.26817 * 19 18 16 21 21 Cl 1.73600 * 122.12667 * 180.02562 * 20 19 18 22 22 C 1.34339 * 115.75274 * 359.97438 * 20 19 18 23 23 S 1.71063 * 109.09604 * 0.02562 * 22 20 19 24 24 C 1.47813 * 134.45646 * 359.86687 * 9 7 2 25 25 H 0.97001 * 120.00069 * 0.02562 * 1 2 3 26 26 H 1.08996 * 113.76809 * 41.05697 * 10 9 7 27 27 H 1.08990 * 113.77078 * 269.65988 * 10 9 7 28 28 H 1.08994 * 109.47020 * 292.64667 * 12 11 10 29 29 H 1.08998 * 109.46807 * 52.64803 * 12 11 10 30 30 H 1.09001 * 109.46773 * 298.35100 * 13 12 11 31 31 H 1.08994 * 109.46906 * 58.34710 * 13 12 11 32 32 H 0.96699 * 114.00488 * 180.02562 * 14 13 12 33 33 H 0.96998 * 119.99561 * 246.89385 * 15 11 10 34 34 H 1.08003 * 125.45375 * 180.02562 * 22 20 19 35 35 H 1.08994 * 113.77001 * 90.37940 * 24 9 7 36 36 H 1.09001 * 113.83299 * 318.91324 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4476 2.6526 0.7001 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 1.7201 -3.8102 0.0005 11 6 0.3470 -4.0830 0.6409 12 6 0.3645 -4.0562 2.1707 13 6 -1.0681 -4.1543 2.6988 14 8 -1.0491 -4.1679 4.1276 15 7 -0.3333 -5.2614 0.0981 16 6 0.1759 -6.4910 0.3107 17 8 1.2481 -6.6167 0.8707 18 6 -0.5660 -7.6821 -0.1351 19 7 -1.7238 -7.6731 -0.7392 20 6 -2.2162 -8.8443 -1.0475 21 17 -3.7436 -9.0205 -1.8535 22 6 -1.4645 -9.9027 -0.7020 23 16 -0.0395 -9.3503 0.0664 24 6 -0.1058 -2.7571 0.0025 25 1 -0.4850 0.8400 -0.0004 26 1 2.5624 -4.0324 0.6557 27 1 1.8319 -4.2351 -0.9969 28 1 0.9472 -4.8990 2.5421 29 1 0.8147 -3.1243 2.5125 30 1 -1.6430 -3.2959 2.3512 31 1 -1.5282 -5.0720 2.3327 32 1 -1.9253 -4.2292 4.5321 33 1 -1.1503 -5.1566 -0.4143 34 1 -1.7192 -10.9370 -0.8808 35 1 -0.5312 -2.8722 -0.9944 36 1 -0.7189 -2.1400 0.6594 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717507456.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:42:34 Heat of formation + Delta-G solvation = 18.391138 kcal Electronic energy + Delta-G solvation = -23794.223598 eV Core-core repulsion = 20047.677248 eV Total energy + Delta-G solvation = -3746.546351 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.054 amu Computer time = 1.64 seconds Orbital eigenvalues (eV) -40.55088 -39.68124 -37.86644 -36.83816 -36.39170 -33.79782 -32.08998 -30.88430 -30.16725 -27.33543 -26.55657 -25.10659 -23.53852 -22.42194 -21.47368 -20.11867 -19.09213 -18.49867 -17.43089 -17.06262 -16.80755 -15.96102 -15.74975 -15.51414 -14.83164 -14.75414 -14.32369 -14.14524 -13.96399 -13.72140 -13.56935 -12.55395 -12.45106 -12.05039 -11.92744 -11.77763 -11.63963 -11.39941 -11.09009 -10.97678 -10.79797 -10.75885 -10.61620 -10.26324 -10.16395 -10.05939 -9.81504 -9.65760 -9.36950 -9.14842 -8.93974 -8.69664 -6.95654 -5.82023 -3.14204 -0.17820 0.64771 0.92243 1.86270 1.88134 3.06976 3.18432 3.39275 3.44540 3.46010 4.04035 4.43567 4.45315 4.57842 4.69878 5.09134 5.15497 5.24911 5.46024 5.51785 5.69856 5.74310 5.91035 6.24312 6.36566 6.46919 6.60183 6.66611 6.77288 6.86039 7.07889 7.22151 7.45279 7.61810 7.87808 7.91686 8.19960 8.99498 9.65777 10.50790 11.35535 Molecular weight = 331.05amu Principal moments of inertia in cm(-1) A = 0.016849 B = 0.003093 C = 0.003009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1661.440229 B = 9049.145002 C = 9302.007386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.005 4.005 3 Si 0.914 3.086 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.221 4.221 8 H 0.083 0.917 9 N -0.604 5.604 10 C 0.128 3.872 11 C 0.120 3.880 12 C -0.095 4.095 13 C 0.081 3.919 14 O -0.574 6.574 15 N -0.683 5.683 16 C 0.593 3.407 17 O -0.517 6.517 18 C 0.006 3.994 19 N -0.423 5.423 20 C 0.110 3.890 21 Cl -0.008 7.008 22 C -0.281 4.281 23 S 0.293 5.707 24 C 0.168 3.832 25 H 0.255 0.745 26 H 0.055 0.945 27 H 0.038 0.962 28 H 0.074 0.926 29 H 0.095 0.905 30 H 0.051 0.949 31 H 0.035 0.965 32 H 0.373 0.627 33 H 0.409 0.591 34 H 0.193 0.807 35 H 0.034 0.966 36 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.921 -20.960 0.097 22.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.202 4.202 3 Si 0.744 3.256 4 H -0.216 1.216 5 H -0.216 1.216 6 H -0.205 1.205 7 C -0.348 4.348 8 H 0.101 0.899 9 N -0.330 5.330 10 C 0.002 3.998 11 C 0.034 3.966 12 C -0.134 4.134 13 C 0.003 3.997 14 O -0.379 6.379 15 N -0.335 5.335 16 C 0.374 3.626 17 O -0.392 6.392 18 C -0.270 4.270 19 N -0.142 5.142 20 C -0.055 4.055 21 Cl 0.020 6.980 22 C -0.423 4.423 23 S 0.548 5.452 24 C 0.042 3.958 25 H 0.065 0.935 26 H 0.073 0.927 27 H 0.055 0.945 28 H 0.093 0.907 29 H 0.113 0.887 30 H 0.069 0.931 31 H 0.054 0.946 32 H 0.218 0.782 33 H 0.244 0.756 34 H 0.210 0.790 35 H 0.051 0.949 36 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -4.932 -20.580 0.692 21.174 hybrid contribution -1.871 0.640 -1.111 2.269 sum -6.803 -19.940 -0.419 21.073 Atomic orbital electron populations 1.69776 1.05022 1.25525 1.56516 1.24771 0.95703 0.97557 1.02168 0.86092 0.78709 0.83247 0.77562 1.21617 1.21596 1.20512 1.19003 0.90329 0.81437 1.44053 0.89902 1.45703 1.01765 0.99501 1.86043 1.22818 0.94241 0.85743 0.97044 1.23217 0.96019 0.83885 0.93480 1.21348 0.95678 1.04539 0.91832 1.22137 0.98231 0.99265 0.80058 1.86483 1.33663 1.97484 1.20252 1.46046 1.28980 1.04775 1.53655 1.16686 0.84496 0.81661 0.79784 1.90876 1.20040 1.85632 1.42687 1.27921 0.95199 0.99116 1.04750 1.66274 1.09509 1.26777 1.11607 1.20398 0.93334 0.87995 1.03742 1.98410 1.25607 1.96942 1.77041 1.26633 1.01220 1.05443 1.09005 1.84199 1.14713 0.98691 1.47634 1.22602 0.89118 0.86954 0.97160 0.93536 0.92683 0.94480 0.90748 0.88701 0.93067 0.94642 0.78175 0.75555 0.78969 0.94858 0.89754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.41 11.39 55.49 0.63 -25.77 16 2 C -0.01 -0.15 5.50 -17.43 -0.10 -0.24 16 3 Si 0.91 21.89 29.55 -169.99 -5.02 16.87 16 4 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 6 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.22 -6.08 10.70 -15.06 -0.16 -6.24 16 8 H 0.08 2.22 7.83 -52.49 -0.41 1.81 16 9 N -0.60 -15.11 3.55 -177.50 -0.63 -15.74 16 10 C 0.13 2.72 7.55 -2.96 -0.02 2.70 16 11 C 0.12 2.24 0.67 -134.02 -0.09 2.15 16 12 C -0.10 -1.79 4.81 -26.73 -0.13 -1.92 16 13 C 0.08 1.30 6.83 37.16 0.25 1.56 16 14 O -0.57 -9.00 13.66 -35.23 -0.48 -9.48 16 15 N -0.68 -10.70 4.52 -50.19 -0.23 -10.93 16 16 C 0.59 9.12 7.46 -12.61 -0.09 9.03 16 17 O -0.52 -9.12 15.33 5.26 0.08 -9.04 16 18 C 0.01 0.08 7.45 -14.42 -0.11 -0.03 16 19 N -0.42 -5.33 10.25 -8.61 -0.09 -5.42 16 20 C 0.11 1.18 7.22 -19.40 -0.14 1.04 16 21 Cl -0.01 -0.08 29.20 -51.86 -1.51 -1.59 16 22 C -0.28 -2.30 10.93 29.36 0.32 -1.98 16 23 S 0.29 2.70 23.03 -107.50 -2.48 0.22 16 24 C 0.17 3.73 6.70 -2.83 -0.02 3.71 16 25 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 26 H 0.05 1.18 8.10 -51.93 -0.42 0.76 16 27 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.07 1.43 7.08 -51.93 -0.37 1.06 16 29 H 0.09 2.04 8.02 -51.93 -0.42 1.63 16 30 H 0.05 0.84 7.54 -51.93 -0.39 0.45 16 31 H 0.04 0.52 7.62 -51.93 -0.40 0.13 16 32 H 0.37 3.88 9.12 45.56 0.42 4.30 16 33 H 0.41 5.83 8.37 -40.82 -0.34 5.49 16 34 H 0.19 0.96 8.06 -52.48 -0.42 0.54 16 35 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 36 H 0.08 2.04 6.56 -51.93 -0.34 1.70 16 LS Contribution 340.53 15.07 5.13 5.13 Total: -1.00 -31.98 340.53 -7.95 -39.93 By element: Atomic # 1 Polarization: 9.11 SS G_CDS: -3.07 Total: 6.04 kcal Atomic # 6 Polarization: 10.07 SS G_CDS: -0.28 Total: 9.78 kcal Atomic # 7 Polarization: -57.55 SS G_CDS: -0.31 Total: -57.86 kcal Atomic # 8 Polarization: -18.12 SS G_CDS: -0.40 Total: -18.52 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Atomic # 16 Polarization: 2.70 SS G_CDS: -2.48 Total: 0.22 kcal Atomic # 17 Polarization: -0.08 SS G_CDS: -1.51 Total: -1.59 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -31.98 -7.95 -39.93 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717507456.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.320 kcal (2) G-P(sol) polarization free energy of solvation -31.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.929 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.64 seconds