Wall clock time and date at job start Tue Mar 31 2020 16:42:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86800 * 119.99935 * 2 1 4 4 H 1.48498 * 109.47531 * 269.99771 * 3 2 1 5 5 H 1.48496 * 109.47228 * 30.00387 * 3 2 1 6 6 H 1.48504 * 109.47053 * 150.00112 * 3 2 1 7 7 C 1.38814 * 120.00193 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00320 * 179.97438 * 7 2 1 9 9 N 1.36942 * 119.99816 * 0.02562 * 7 2 1 10 10 C 1.47582 * 134.49146 * 179.97438 * 9 7 2 11 11 C 1.53949 * 86.11438 * 155.36000 * 10 9 7 12 12 C 1.53010 * 113.73817 * 269.15504 * 11 10 9 13 13 C 1.53001 * 109.46799 * 172.64437 * 12 11 10 14 14 O 1.42895 * 109.47010 * 178.35173 * 13 12 11 15 15 N 1.46496 * 113.74080 * 137.95655 * 11 10 9 16 16 C 1.34776 * 119.99987 * 66.90088 * 15 11 10 17 17 O 1.21619 * 120.00276 * 354.79823 * 16 15 11 18 18 C 1.47229 * 119.99719 * 174.80100 * 16 15 11 19 19 N 1.30602 * 125.53454 * 359.69350 * 18 16 15 20 20 C 1.30732 * 115.90180 * 180.26817 * 19 18 16 21 21 Cl 1.73600 * 122.12667 * 180.02562 * 20 19 18 22 22 C 1.34339 * 115.75274 * 359.97438 * 20 19 18 23 23 S 1.71063 * 109.09604 * 0.02562 * 22 20 19 24 24 C 1.47813 * 134.45646 * 359.86687 * 9 7 2 25 25 H 0.97001 * 120.00069 * 0.02562 * 1 2 3 26 26 H 1.08996 * 113.76809 * 41.05697 * 10 9 7 27 27 H 1.08990 * 113.77078 * 269.65988 * 10 9 7 28 28 H 1.08994 * 109.47020 * 292.64667 * 12 11 10 29 29 H 1.08998 * 109.46807 * 52.64803 * 12 11 10 30 30 H 1.09001 * 109.46773 * 298.35100 * 13 12 11 31 31 H 1.08994 * 109.46906 * 58.34710 * 13 12 11 32 32 H 0.96699 * 114.00488 * 180.02562 * 14 13 12 33 33 H 0.96998 * 119.99561 * 246.89385 * 15 11 10 34 34 H 1.08003 * 125.45375 * 180.02562 * 22 20 19 35 35 H 1.08994 * 113.77001 * 90.37940 * 24 9 7 36 36 H 1.09001 * 113.83299 * 318.91324 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4476 2.6526 0.7001 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 1.7201 -3.8102 0.0005 11 6 0.3470 -4.0830 0.6409 12 6 0.3645 -4.0562 2.1707 13 6 -1.0681 -4.1543 2.6988 14 8 -1.0491 -4.1679 4.1276 15 7 -0.3333 -5.2614 0.0981 16 6 0.1759 -6.4910 0.3107 17 8 1.2481 -6.6167 0.8707 18 6 -0.5660 -7.6821 -0.1351 19 7 -1.7238 -7.6731 -0.7392 20 6 -2.2162 -8.8443 -1.0475 21 17 -3.7436 -9.0205 -1.8535 22 6 -1.4645 -9.9027 -0.7020 23 16 -0.0395 -9.3503 0.0664 24 6 -0.1058 -2.7571 0.0025 25 1 -0.4850 0.8400 -0.0004 26 1 2.5624 -4.0324 0.6557 27 1 1.8319 -4.2351 -0.9969 28 1 0.9472 -4.8990 2.5421 29 1 0.8147 -3.1243 2.5125 30 1 -1.6430 -3.2959 2.3512 31 1 -1.5282 -5.0720 2.3327 32 1 -1.9253 -4.2292 4.5321 33 1 -1.1503 -5.1566 -0.4143 34 1 -1.7192 -10.9370 -0.8808 35 1 -0.5312 -2.8722 -0.9944 36 1 -0.7189 -2.1400 0.6594 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717507456.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:42:34 Heat of formation + Delta-G solvation = -6.913585 kcal Electronic energy + Delta-G solvation = -23795.320893 eV Core-core repulsion = 20047.677248 eV Total energy + Delta-G solvation = -3747.643646 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.054 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.74431 -40.80227 -39.30142 -37.71256 -37.59078 -35.36260 -33.87512 -32.18820 -31.31378 -29.06716 -27.67541 -26.87855 -25.12266 -23.61102 -23.00463 -21.27354 -20.28602 -19.66316 -18.77888 -18.49872 -18.27477 -17.18265 -16.84839 -16.77391 -16.58212 -16.08471 -15.76429 -15.43517 -15.33736 -14.99368 -14.70255 -14.39994 -13.72692 -13.36206 -13.28431 -13.18287 -12.93164 -12.80826 -12.72216 -12.58534 -12.28490 -12.13484 -12.07880 -11.77119 -11.65327 -11.39525 -11.06478 -10.93314 -10.91436 -10.80111 -10.23445 -9.86766 -8.97087 -7.92372 -5.25848 -1.00604 -0.12481 0.13243 0.97744 1.12819 1.47613 1.48929 1.57654 1.94943 1.99702 2.48814 3.00963 3.11713 3.26646 3.41640 3.57436 3.77434 4.02282 4.11007 4.21288 4.31137 4.41855 4.46380 4.66907 4.71903 4.85076 4.93946 5.11047 5.13118 5.20427 5.46757 5.58178 5.88156 6.01666 6.40138 6.88658 6.90027 6.97571 7.57322 8.49333 9.24536 Molecular weight = 331.05amu Principal moments of inertia in cm(-1) A = 0.016849 B = 0.003093 C = 0.003009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1661.440229 B = 9049.145002 C = 9302.007386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C -0.057 4.057 3 Si 0.978 3.022 4 H -0.286 1.286 5 H -0.292 1.292 6 H -0.271 1.271 7 C -0.237 4.237 8 H 0.083 0.917 9 N -0.630 5.630 10 C 0.127 3.873 11 C 0.152 3.848 12 C -0.089 4.089 13 C 0.091 3.909 14 O -0.589 6.589 15 N -0.682 5.682 16 C 0.599 3.401 17 O -0.544 6.544 18 C -0.040 4.040 19 N -0.433 5.433 20 C 0.083 3.917 21 Cl -0.004 7.004 22 C -0.250 4.250 23 S 0.354 5.646 24 C 0.172 3.828 25 H 0.251 0.749 26 H 0.050 0.950 27 H 0.042 0.958 28 H 0.071 0.929 29 H 0.060 0.940 30 H 0.046 0.954 31 H 0.055 0.945 32 H 0.396 0.604 33 H 0.417 0.583 34 H 0.230 0.770 35 H 0.031 0.969 36 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.333 -23.378 0.055 24.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.251 4.251 3 Si 0.806 3.194 4 H -0.213 1.213 5 H -0.218 1.218 6 H -0.196 1.196 7 C -0.365 4.365 8 H 0.100 0.900 9 N -0.357 5.357 10 C 0.001 3.999 11 C 0.065 3.935 12 C -0.128 4.128 13 C 0.013 3.987 14 O -0.397 6.397 15 N -0.334 5.334 16 C 0.382 3.618 17 O -0.422 6.422 18 C -0.313 4.313 19 N -0.153 5.153 20 C -0.082 4.082 21 Cl 0.023 6.977 22 C -0.392 4.392 23 S 0.608 5.392 24 C 0.046 3.954 25 H 0.060 0.940 26 H 0.069 0.931 27 H 0.060 0.940 28 H 0.089 0.911 29 H 0.079 0.921 30 H 0.064 0.936 31 H 0.073 0.927 32 H 0.246 0.754 33 H 0.254 0.746 34 H 0.247 0.753 35 H 0.049 0.951 36 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -5.364 -23.030 0.652 23.656 hybrid contribution -1.752 1.179 -1.106 2.384 sum -7.116 -21.851 -0.454 22.985 Atomic orbital electron populations 1.69938 1.06193 1.25834 1.57574 1.25546 0.96604 1.00536 1.02404 0.85095 0.77733 0.79148 0.77437 1.21315 1.21817 1.19564 1.19332 0.90766 0.82824 1.43574 0.89968 1.45976 1.03168 1.00266 1.86241 1.22891 0.95613 0.84000 0.97364 1.22454 0.94004 0.83827 0.93203 1.21206 0.97376 1.02457 0.91719 1.21937 0.96159 0.99950 0.80604 1.86422 1.36064 1.97502 1.19753 1.45775 1.29166 1.04330 1.54090 1.16880 0.84125 0.82011 0.78791 1.90856 1.21267 1.86176 1.43856 1.27236 0.96208 0.99918 1.07968 1.66180 1.09559 1.28351 1.11251 1.20553 0.94196 0.88136 1.05296 1.98411 1.25352 1.96846 1.77042 1.27149 0.99736 1.06686 1.05675 1.84056 1.13965 0.95355 1.45835 1.22457 0.87695 0.88479 0.96777 0.94006 0.93130 0.93987 0.91079 0.92084 0.93557 0.92723 0.75387 0.74601 0.75297 0.95079 0.92022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -55.63 11.39 21.65 0.25 -55.38 16 2 C -0.06 -3.23 5.50 84.86 0.47 -2.76 16 3 Si 0.98 45.65 29.55 68.60 2.03 47.67 16 4 H -0.29 -13.15 7.11 99.48 0.71 -12.44 16 5 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 6 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 7 C -0.24 -13.37 10.70 84.03 0.90 -12.47 16 8 H 0.08 4.50 7.83 -2.91 -0.02 4.47 16 9 N -0.63 -32.50 3.55 -715.48 -2.54 -35.04 16 10 C 0.13 5.54 7.55 86.49 0.65 6.19 16 11 C 0.15 5.81 0.67 5.37 0.00 5.81 16 12 C -0.09 -3.40 4.81 30.60 0.15 -3.25 16 13 C 0.09 2.92 6.83 71.98 0.49 3.41 16 14 O -0.59 -17.92 13.66 -148.98 -2.03 -19.96 16 15 N -0.68 -21.28 4.52 -430.95 -1.95 -23.22 16 16 C 0.60 18.03 7.46 86.61 0.65 18.67 16 17 O -0.54 -18.94 15.33 -4.09 -0.06 -19.01 16 18 C -0.04 -0.95 7.45 87.24 0.65 -0.30 16 19 N -0.43 -10.21 10.25 -181.16 -1.86 -12.07 16 20 C 0.08 1.56 7.22 83.96 0.61 2.17 16 21 Cl 0.00 -0.08 29.20 -2.72 -0.08 -0.16 16 22 C -0.25 -3.13 10.93 66.93 0.73 -2.39 16 23 S 0.35 5.43 23.03 -56.49 -1.30 4.12 16 24 C 0.17 7.89 6.70 86.45 0.58 8.47 16 25 H 0.25 14.32 8.31 -92.71 -0.77 13.55 16 26 H 0.05 2.23 8.10 -2.39 -0.02 2.21 16 27 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 28 H 0.07 2.76 7.08 -2.39 -0.02 2.74 16 29 H 0.06 2.74 8.02 -2.39 -0.02 2.72 16 30 H 0.05 1.53 7.54 -2.39 -0.02 1.51 16 31 H 0.05 1.55 7.62 -2.39 -0.02 1.53 16 32 H 0.40 7.61 9.12 -74.06 -0.68 6.93 16 33 H 0.42 11.81 8.37 -92.71 -0.78 11.03 16 34 H 0.23 1.05 8.06 -2.91 -0.02 1.03 16 35 H 0.03 1.44 8.14 -2.39 -0.02 1.42 16 36 H 0.06 3.11 6.56 -2.39 -0.02 3.10 16 Total: -1.00 -70.24 340.53 -1.97 -72.21 By element: Atomic # 1 Polarization: 17.56 SS G_CDS: -0.29 Total: 17.27 kcal Atomic # 6 Polarization: 17.68 SS G_CDS: 5.88 Total: 23.55 kcal Atomic # 7 Polarization: -119.62 SS G_CDS: -6.10 Total: -125.71 kcal Atomic # 8 Polarization: -36.87 SS G_CDS: -2.10 Total: -38.96 kcal Atomic # 14 Polarization: 45.65 SS G_CDS: 2.03 Total: 47.67 kcal Atomic # 16 Polarization: 5.43 SS G_CDS: -1.30 Total: 4.12 kcal Atomic # 17 Polarization: -0.08 SS G_CDS: -0.08 Total: -0.16 kcal Total: -70.24 -1.97 -72.21 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717507456.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.298 kcal (2) G-P(sol) polarization free energy of solvation -70.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds