Wall clock time and date at job start Tue Mar 31 2020 16:55:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86792 * 119.99820 * 2 1 4 4 H 1.48505 * 109.46977 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47575 * 299.99917 * 3 2 1 6 6 H 1.48503 * 109.47384 * 60.00731 * 3 2 1 7 7 C 1.38804 * 119.99725 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00261 * 179.97438 * 7 2 1 9 9 N 1.36947 * 120.00241 * 359.97438 * 7 2 1 10 10 C 1.46498 * 119.99749 * 179.97438 * 9 7 2 11 11 C 1.53005 * 109.46728 * 180.02562 * 10 9 7 12 12 H 1.09003 * 109.51270 * 60.10267 * 11 10 9 13 13 C 1.53718 * 109.48352 * 180.36350 * 11 10 9 14 14 N 1.47152 * 108.16184 * 172.39961 * 13 11 10 15 15 C 1.34769 * 120.98396 * 129.43167 * 14 13 11 16 16 O 1.21707 * 119.99831 * 353.94462 * 15 14 13 17 17 C 1.46530 * 120.00103 * 174.21883 * 15 14 13 18 18 S 1.76204 * 126.17536 * 324.71324 * 17 15 14 19 19 C 1.70918 * 90.38848 * 179.97438 * 18 17 15 20 20 N 1.29362 * 110.62099 * 0.30514 * 19 18 17 21 21 C 1.31044 * 117.45240 * 359.76167 * 20 19 18 22 22 Cl 1.73601 * 123.05307 * 179.97438 * 21 20 19 23 23 C 1.47157 * 118.03539 * 309.15908 * 14 13 11 24 24 C 1.53303 * 108.38372 * 50.78400 * 23 14 13 25 25 O 1.42959 * 109.51202 * 299.99843 * 11 10 9 26 26 H 0.96996 * 119.99797 * 359.97438 * 1 2 3 27 27 H 0.96995 * 119.99673 * 359.97438 * 9 7 2 28 28 H 1.09000 * 109.47359 * 60.00840 * 10 9 7 29 29 H 1.09001 * 109.47594 * 300.00197 * 10 9 7 30 30 H 1.09002 * 109.83466 * 52.72046 * 13 11 10 31 31 H 1.08997 * 109.74477 * 292.02587 * 13 11 10 32 32 H 1.08001 * 124.68969 * 180.08189 * 19 18 17 33 33 H 1.08994 * 109.68153 * 170.50691 * 23 14 13 34 34 H 1.08997 * 109.68136 * 291.06870 * 23 14 13 35 35 H 1.09003 * 109.50701 * 67.62159 * 24 23 14 36 36 H 1.09004 * 109.51081 * 187.77499 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7103 1.3463 0.0006 5 1 1.8915 2.3965 -1.2125 6 1 1.8916 2.3964 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0580 -3.6568 -0.0017 11 6 1.0637 -4.8197 -0.0021 12 1 0.4376 -4.7630 -0.8925 13 6 1.8320 -6.1511 0.0059 14 7 0.8600 -7.2404 0.1903 15 6 0.8484 -8.3068 -0.6337 16 8 1.5738 -8.3287 -1.6107 17 6 -0.0418 -9.4372 -0.3566 18 16 -0.4800 -10.0499 1.2363 19 6 -1.4591 -11.2523 0.5173 20 7 -1.4187 -11.1616 -0.7725 21 6 -0.6781 -10.2115 -1.2884 22 17 -0.5184 -9.9585 -2.9984 23 6 -0.0951 -7.1339 1.3048 24 6 -0.7659 -5.7571 1.2367 25 8 0.2418 -4.7456 1.1653 26 1 -0.4849 0.8400 0.0004 27 1 0.3556 -2.3880 0.0002 28 1 2.6853 -3.7150 0.8879 29 1 2.6841 -3.7142 -0.8921 30 1 2.5511 -6.1583 0.8250 31 1 2.3535 -6.2811 -0.9423 32 1 -2.0296 -11.9884 1.0641 33 1 -0.8502 -7.9150 1.2170 34 1 0.4334 -7.2383 2.2523 35 1 -1.3987 -5.7039 0.3508 36 1 -1.3733 -5.6036 2.1288 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001724824472.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:55:01 Heat of formation + Delta-G solvation = -3.505362 kcal Electronic energy + Delta-G solvation = -23568.621469 eV Core-core repulsion = 19821.125615 eV Total energy + Delta-G solvation = -3747.495854 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.054 amu Computer time = 3.14 seconds Orbital eigenvalues (eV) -40.78730 -39.92841 -38.29542 -36.92009 -35.19503 -34.45231 -32.39513 -31.16080 -30.14774 -28.29445 -26.77519 -25.50912 -23.64174 -22.95016 -21.57429 -20.86441 -20.08055 -18.92792 -17.37814 -17.07419 -16.95927 -16.31283 -15.94635 -15.54151 -15.17658 -14.99839 -14.95072 -14.53173 -14.44992 -13.88844 -13.41870 -13.20565 -12.75539 -12.66820 -12.58704 -12.34047 -12.05809 -11.68812 -11.41166 -11.08119 -10.93533 -10.81209 -10.70415 -10.45428 -10.23738 -10.08514 -9.94779 -9.89848 -9.70084 -9.32739 -8.87157 -8.69167 -6.89225 -5.72907 -3.01732 -0.38135 0.34900 0.80630 1.63420 1.86092 2.43174 2.71223 3.45777 3.51137 3.53538 3.77949 3.85556 4.16208 4.35362 4.53410 4.64494 4.68638 4.93861 4.96229 5.02490 5.21629 5.34693 5.56739 5.59709 5.61636 5.79065 5.88400 6.12955 6.25805 6.53520 6.66409 6.77119 6.97123 7.38641 7.71914 7.72989 8.45190 9.57091 10.13888 10.49786 11.49904 Molecular weight = 331.05amu Principal moments of inertia in cm(-1) A = 0.024332 B = 0.002689 C = 0.002568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1150.464557 B =10410.923812 C =10900.182219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.014 4.014 3 Si 0.907 3.093 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.239 4.239 8 H 0.071 0.929 9 N -0.726 5.726 10 C 0.164 3.836 11 C 0.073 3.927 12 H 0.066 0.934 13 C 0.088 3.912 14 N -0.605 5.605 15 C 0.595 3.405 16 O -0.504 6.504 17 C -0.282 4.282 18 S 0.230 5.770 19 C 0.030 3.970 20 N -0.467 5.467 21 C 0.177 3.823 22 Cl 0.027 6.973 23 C 0.060 3.940 24 C 0.049 3.951 25 O -0.354 6.354 26 H 0.254 0.746 27 H 0.388 0.612 28 H 0.029 0.971 29 H 0.037 0.963 30 H 0.083 0.917 31 H 0.106 0.894 32 H 0.215 0.785 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.055 0.945 36 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.109 -25.966 4.748 26.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.210 4.210 3 Si 0.739 3.261 4 H -0.205 1.205 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.370 4.370 8 H 0.089 0.911 9 N -0.371 5.371 10 C 0.035 3.965 11 C 0.014 3.986 12 H 0.084 0.916 13 C -0.034 4.034 14 N -0.340 5.340 15 C 0.380 3.620 16 O -0.380 6.380 17 C -0.408 4.408 18 S 0.485 5.515 19 C -0.265 4.265 20 N -0.182 5.182 21 C 0.012 3.988 22 Cl 0.055 6.945 23 C -0.064 4.064 24 C -0.029 4.029 25 O -0.271 6.271 26 H 0.064 0.936 27 H 0.222 0.778 28 H 0.047 0.953 29 H 0.054 0.946 30 H 0.102 0.898 31 H 0.124 0.876 32 H 0.231 0.769 33 H 0.105 0.895 34 H 0.105 0.895 35 H 0.074 0.926 36 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -3.621 -25.859 4.955 26.577 hybrid contribution -0.073 0.621 -1.118 1.281 sum -3.695 -25.238 3.836 25.794 Atomic orbital electron populations 1.69690 1.05106 1.25448 1.57741 1.24745 0.95533 0.97681 1.03037 0.86108 0.78774 0.84105 0.77143 1.20544 1.21905 1.21889 1.19269 0.91046 0.84057 1.42616 0.91077 1.42217 1.06077 0.99435 1.89329 1.20626 0.92305 0.84654 0.98874 1.22915 0.93009 0.94078 0.88602 0.91633 1.22539 0.91063 0.85158 1.04632 1.47983 1.35163 1.20503 1.30304 1.16554 0.81824 0.80740 0.82905 1.90894 1.40899 1.79645 1.26562 1.25677 1.11518 1.07031 0.96584 1.84244 1.39279 1.22547 1.05478 1.28727 1.02417 1.03079 0.92250 1.65686 1.20139 1.20516 1.11825 1.21095 0.95654 0.92097 0.89998 1.98459 1.95940 1.94865 1.05210 1.22851 0.93054 1.00214 0.90253 1.22884 0.90894 0.85961 1.03145 1.88182 1.45928 1.50327 1.42698 0.93615 0.77811 0.95302 0.94577 0.89835 0.87570 0.76894 0.89508 0.89529 0.92635 0.87385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 38. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.53 13.06 55.49 0.72 -27.81 16 2 C -0.01 -0.41 5.50 -17.43 -0.10 -0.50 16 3 Si 0.91 22.59 29.55 -169.99 -5.02 17.57 16 4 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 6 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 7 C -0.24 -6.76 9.99 -15.06 -0.15 -6.91 16 8 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 9 N -0.73 -18.76 5.50 -59.91 -0.33 -19.09 16 10 C 0.16 3.29 5.96 -4.04 -0.02 3.26 16 11 C 0.07 1.21 2.88 -26.36 -0.08 1.13 16 12 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 13 C 0.09 1.20 5.97 -3.31 -0.02 1.18 16 14 N -0.61 -7.50 3.01 -173.61 -0.52 -8.02 16 15 C 0.59 7.97 7.45 -12.92 -0.10 7.88 16 16 O -0.50 -8.26 15.47 5.18 0.08 -8.18 16 17 C -0.28 -3.09 5.62 -36.75 -0.21 -3.30 16 18 S 0.23 1.42 19.88 -107.50 -2.14 -0.72 16 19 C 0.03 0.18 12.20 51.72 0.63 0.81 16 20 N -0.47 -4.67 10.50 -12.22 -0.13 -4.79 16 21 C 0.18 2.06 7.40 -18.39 -0.14 1.93 16 22 Cl 0.03 0.34 28.00 -51.86 -1.45 -1.11 16 23 C 0.06 0.58 5.72 -3.53 -0.02 0.56 16 24 C 0.05 0.59 6.99 37.31 0.26 0.85 16 25 O -0.35 -5.93 10.13 -35.23 -0.36 -6.29 16 26 H 0.25 7.49 8.31 -40.82 -0.34 7.15 16 27 H 0.39 10.67 7.54 -40.82 -0.31 10.36 16 28 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 31 H 0.11 1.50 7.06 -51.93 -0.37 1.13 16 32 H 0.21 0.35 8.06 -52.49 -0.42 -0.07 16 33 H 0.09 0.67 4.49 -33.91 -0.15 0.51 16 34 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 35 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 36 H 0.11 1.03 8.14 -51.93 -0.42 0.61 16 LS Contribution 332.40 15.07 5.01 5.01 Total: -1.00 -35.25 332.40 -7.82 -43.07 By element: Atomic # 1 Polarization: 7.23 SS G_CDS: -3.75 Total: 3.47 kcal Atomic # 6 Polarization: 6.82 SS G_CDS: 0.07 Total: 6.89 kcal Atomic # 7 Polarization: -59.46 SS G_CDS: -0.26 Total: -59.71 kcal Atomic # 8 Polarization: -14.19 SS G_CDS: -0.28 Total: -14.47 kcal Atomic # 14 Polarization: 22.59 SS G_CDS: -5.02 Total: 17.57 kcal Atomic # 16 Polarization: 1.42 SS G_CDS: -2.14 Total: -0.72 kcal Atomic # 17 Polarization: 0.34 SS G_CDS: -1.45 Total: -1.11 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -35.25 -7.82 -43.07 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724824472.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.565 kcal (2) G-P(sol) polarization free energy of solvation -35.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.14 seconds