Wall clock time and date at job start Tue Mar 31 2020 16:54:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86792 * 119.99820 * 2 1 4 4 H 1.48505 * 109.46977 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47575 * 299.99917 * 3 2 1 6 6 H 1.48503 * 109.47384 * 60.00731 * 3 2 1 7 7 C 1.38804 * 119.99725 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00261 * 179.97438 * 7 2 1 9 9 N 1.36947 * 120.00241 * 359.97438 * 7 2 1 10 10 C 1.46498 * 119.99749 * 179.97438 * 9 7 2 11 11 C 1.53005 * 109.46728 * 180.02562 * 10 9 7 12 12 H 1.09003 * 109.51270 * 60.10267 * 11 10 9 13 13 C 1.53718 * 109.48352 * 180.36350 * 11 10 9 14 14 N 1.47152 * 108.16184 * 172.39961 * 13 11 10 15 15 C 1.34769 * 120.98396 * 129.43167 * 14 13 11 16 16 O 1.21707 * 119.99831 * 353.94462 * 15 14 13 17 17 C 1.46530 * 120.00103 * 174.21883 * 15 14 13 18 18 S 1.76204 * 126.17536 * 324.71324 * 17 15 14 19 19 C 1.70918 * 90.38848 * 179.97438 * 18 17 15 20 20 N 1.29362 * 110.62099 * 0.30514 * 19 18 17 21 21 C 1.31044 * 117.45240 * 359.76167 * 20 19 18 22 22 Cl 1.73601 * 123.05307 * 179.97438 * 21 20 19 23 23 C 1.47157 * 118.03539 * 309.15908 * 14 13 11 24 24 C 1.53303 * 108.38372 * 50.78400 * 23 14 13 25 25 O 1.42959 * 109.51202 * 299.99843 * 11 10 9 26 26 H 0.96996 * 119.99797 * 359.97438 * 1 2 3 27 27 H 0.96995 * 119.99673 * 359.97438 * 9 7 2 28 28 H 1.09000 * 109.47359 * 60.00840 * 10 9 7 29 29 H 1.09001 * 109.47594 * 300.00197 * 10 9 7 30 30 H 1.09002 * 109.83466 * 52.72046 * 13 11 10 31 31 H 1.08997 * 109.74477 * 292.02587 * 13 11 10 32 32 H 1.08001 * 124.68969 * 180.08189 * 19 18 17 33 33 H 1.08994 * 109.68153 * 170.50691 * 23 14 13 34 34 H 1.08997 * 109.68136 * 291.06870 * 23 14 13 35 35 H 1.09003 * 109.50701 * 67.62159 * 24 23 14 36 36 H 1.09004 * 109.51081 * 187.77499 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7103 1.3463 0.0006 5 1 1.8915 2.3965 -1.2125 6 1 1.8916 2.3964 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0580 -3.6568 -0.0017 11 6 1.0637 -4.8197 -0.0021 12 1 0.4376 -4.7630 -0.8925 13 6 1.8320 -6.1511 0.0059 14 7 0.8600 -7.2404 0.1903 15 6 0.8484 -8.3068 -0.6337 16 8 1.5738 -8.3287 -1.6107 17 6 -0.0418 -9.4372 -0.3566 18 16 -0.4800 -10.0499 1.2363 19 6 -1.4591 -11.2523 0.5173 20 7 -1.4187 -11.1616 -0.7725 21 6 -0.6781 -10.2115 -1.2884 22 17 -0.5184 -9.9585 -2.9984 23 6 -0.0951 -7.1339 1.3048 24 6 -0.7659 -5.7571 1.2367 25 8 0.2418 -4.7456 1.1653 26 1 -0.4849 0.8400 0.0004 27 1 0.3556 -2.3880 0.0002 28 1 2.6853 -3.7150 0.8879 29 1 2.6841 -3.7142 -0.8921 30 1 2.5511 -6.1583 0.8250 31 1 2.3535 -6.2811 -0.9423 32 1 -2.0296 -11.9884 1.0641 33 1 -0.8502 -7.9150 1.2170 34 1 0.4334 -7.2383 2.2523 35 1 -1.3987 -5.7039 0.3508 36 1 -1.3733 -5.6036 2.1288 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724824472.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:54:58 Heat of formation + Delta-G solvation = 2.822856 kcal Electronic energy + Delta-G solvation = -23568.347057 eV Core-core repulsion = 19821.125615 eV Total energy + Delta-G solvation = -3747.221442 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.054 amu Computer time = 2.04 seconds Orbital eigenvalues (eV) -41.05979 -39.88117 -38.46867 -37.41536 -36.36916 -35.95770 -34.91448 -33.32091 -29.94242 -29.23978 -28.05436 -26.22603 -24.49453 -24.27173 -22.80066 -21.79384 -20.64411 -18.95386 -18.76258 -18.29139 -17.91734 -17.63541 -16.84248 -16.55282 -16.09251 -15.81740 -15.75644 -15.44967 -14.97072 -14.79520 -14.57294 -14.36152 -14.00882 -13.77769 -13.63388 -13.21262 -13.20301 -12.92058 -12.43781 -12.24162 -12.14498 -12.08903 -11.76261 -11.60675 -11.46250 -11.36785 -11.07592 -10.88006 -10.47207 -9.70122 -9.03475 -8.84509 -8.29664 -7.77945 -4.42062 -1.63875 0.59132 0.80986 1.24353 1.70964 1.91768 2.12411 2.29776 2.37864 2.68670 2.73751 2.78251 3.24534 3.34871 3.42232 3.61359 3.70437 3.93165 3.93834 4.05374 4.16253 4.23835 4.31489 4.44662 4.49659 4.70930 4.76208 4.84463 5.03455 5.06812 5.31977 5.41564 5.87264 5.95835 5.96496 6.54669 6.89491 7.46835 7.57359 8.62870 8.95216 Molecular weight = 331.05amu Principal moments of inertia in cm(-1) A = 0.024332 B = 0.002689 C = 0.002568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1150.464557 B =10410.923812 C =10900.182219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.091 4.091 3 Si 1.042 2.958 4 H -0.187 1.187 5 H -0.264 1.264 6 H -0.263 1.263 7 C 0.383 3.617 8 H 0.291 0.709 9 N -0.521 5.521 10 C 0.084 3.916 11 C 0.056 3.944 12 H 0.062 0.938 13 C 0.089 3.911 14 N -0.644 5.644 15 C 0.557 3.443 16 O -0.666 6.666 17 C -0.570 4.570 18 S -0.192 6.192 19 C -0.465 4.465 20 N -0.487 5.487 21 C -0.004 4.004 22 Cl -0.128 7.128 23 C 0.071 3.929 24 C 0.078 3.922 25 O -0.372 6.372 26 H 0.379 0.621 27 H 0.437 0.563 28 H 0.168 0.832 29 H 0.179 0.821 30 H 0.074 0.926 31 H 0.079 0.921 32 H 0.083 0.917 33 H 0.082 0.918 34 H 0.045 0.955 35 H 0.041 0.959 36 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.848 62.138 5.513 64.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.180 5.180 2 C -0.327 4.327 3 Si 0.853 3.147 4 H -0.107 1.107 5 H -0.188 1.188 6 H -0.187 1.187 7 C 0.199 3.801 8 H 0.306 0.694 9 N -0.109 5.109 10 C -0.037 4.037 11 C -0.003 4.003 12 H 0.080 0.920 13 C -0.034 4.034 14 N -0.380 5.380 15 C 0.368 3.632 16 O -0.564 6.564 17 C -0.693 4.693 18 S 0.036 5.964 19 C -0.719 4.719 20 N -0.201 5.201 21 C -0.186 4.186 22 Cl -0.101 7.101 23 C -0.054 4.054 24 C 0.000 4.000 25 O -0.291 6.291 26 H 0.199 0.801 27 H 0.278 0.722 28 H 0.186 0.814 29 H 0.196 0.804 30 H 0.092 0.908 31 H 0.098 0.902 32 H 0.100 0.900 33 H 0.100 0.900 34 H 0.063 0.937 35 H 0.059 0.941 36 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 16.603 61.398 5.869 63.873 hybrid contribution -1.678 -1.147 -1.146 2.333 sum 14.925 60.251 4.723 62.252 Atomic orbital electron populations 1.69728 1.10139 1.42131 0.95965 1.28997 0.97675 1.07669 0.98373 0.84035 0.81545 0.68843 0.80261 1.10682 1.18848 1.18724 1.27132 1.04073 0.81271 0.67604 0.69386 1.47308 1.15746 1.08353 1.39471 1.23117 0.93204 0.75797 1.11548 1.22883 0.93279 0.94733 0.89398 0.92044 1.22019 0.92113 0.86469 1.02831 1.47741 1.36868 1.20970 1.32418 1.16583 0.82793 0.82291 0.81542 1.90327 1.47374 1.84394 1.34269 1.20638 1.39034 1.20082 0.89549 1.79980 1.62718 1.38516 1.15164 1.22650 1.37146 1.21406 0.90698 1.63941 1.20984 1.21226 1.13900 1.18957 1.14003 1.05379 0.80217 1.97982 1.97829 1.96521 1.17770 1.22480 0.94398 0.99912 0.88639 1.22805 0.89081 0.85247 1.02826 1.87700 1.46978 1.51435 1.42966 0.80118 0.72191 0.81449 0.80411 0.90836 0.90244 0.89967 0.90014 0.93655 0.94099 0.85294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 27. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.55 7.70 13.06 21.65 0.28 7.98 16 2 C -0.09 1.95 5.50 84.86 0.47 2.42 16 3 Si 1.04 -21.24 29.55 68.60 2.03 -19.21 16 4 H -0.19 4.53 7.11 99.48 0.71 5.23 16 5 H -0.26 3.74 7.11 99.48 0.71 4.45 16 6 H -0.26 3.77 7.11 99.48 0.71 4.47 16 7 C 0.38 -10.01 9.99 84.03 0.84 -9.17 16 8 H 0.29 -11.61 7.83 -2.91 -0.02 -11.63 16 9 N -0.52 8.09 5.50 -343.45 -1.89 6.20 16 10 C 0.08 -0.74 5.96 86.38 0.51 -0.22 16 11 C 0.06 0.80 2.88 30.84 0.09 0.89 16 12 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 13 C 0.09 2.79 5.97 86.50 0.52 3.31 16 14 N -0.64 -33.37 3.01 -821.39 -2.48 -35.85 16 15 C 0.56 39.26 7.45 86.41 0.64 39.91 16 16 O -0.67 -49.01 15.47 -4.37 -0.07 -49.07 16 17 C -0.57 -46.63 5.62 24.11 0.14 -46.49 16 18 S -0.19 -15.19 19.88 -56.49 -1.12 -16.31 16 19 C -0.47 -41.23 12.20 130.61 1.59 -39.64 16 20 N -0.49 -44.09 10.50 -192.57 -2.02 -46.12 16 21 C 0.00 -0.34 7.40 84.48 0.63 0.28 16 22 Cl -0.13 -9.61 28.00 -2.72 -0.08 -9.69 16 23 C 0.07 3.39 5.72 86.36 0.49 3.89 16 24 C 0.08 2.38 6.99 72.08 0.50 2.88 16 25 O -0.37 -6.60 10.13 -148.98 -1.51 -8.11 16 26 H 0.38 -5.78 8.31 -92.71 -0.77 -6.55 16 27 H 0.44 -4.49 7.54 -92.71 -0.70 -5.19 16 28 H 0.17 -2.40 8.14 -2.39 -0.02 -2.42 16 29 H 0.18 -2.72 8.14 -2.39 -0.02 -2.74 16 30 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 31 H 0.08 2.74 7.06 -2.39 -0.02 2.72 16 32 H 0.08 7.16 8.06 -2.91 -0.02 7.14 16 33 H 0.08 5.04 4.49 -13.85 -0.06 4.98 16 34 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 35 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 36 H 0.13 3.19 8.14 -2.38 -0.02 3.17 16 Total: -1.00 -202.07 332.40 -0.04 -202.11 By element: Atomic # 1 Polarization: 9.62 SS G_CDS: 0.39 Total: 10.01 kcal Atomic # 6 Polarization: -48.37 SS G_CDS: 6.42 Total: -41.95 kcal Atomic # 7 Polarization: -61.67 SS G_CDS: -6.10 Total: -67.78 kcal Atomic # 8 Polarization: -55.60 SS G_CDS: -1.58 Total: -57.18 kcal Atomic # 14 Polarization: -21.24 SS G_CDS: 2.03 Total: -19.21 kcal Atomic # 16 Polarization: -15.19 SS G_CDS: -1.12 Total: -16.31 kcal Atomic # 17 Polarization: -9.61 SS G_CDS: -0.08 Total: -9.69 kcal Total: -202.07 -0.04 -202.11 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724824472.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 204.934 kcal (2) G-P(sol) polarization free energy of solvation -202.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -202.111 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.04 seconds