Wall clock time and date at job start Tue Mar 31 2020 17:15:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.47025 * 2 1 4 4 N 1.46501 * 109.46987 * 120.00137 * 2 1 3 5 5 C 1.34775 * 119.99771 * 274.99642 * 4 2 1 6 6 O 1.21524 * 120.00287 * 0.02562 * 5 4 2 7 7 C 1.48002 * 119.99737 * 180.02562 * 5 4 2 8 8 C 1.39972 * 120.94000 * 269.99962 * 7 5 4 9 9 Cl 1.73602 * 120.51224 * 0.04548 * 8 7 5 10 10 C 1.38295 * 118.98059 * 180.02562 * 8 7 5 11 11 N 1.31795 * 120.91107 * 0.02562 * 10 8 7 12 12 C 1.31786 * 122.09911 * 359.97438 * 11 10 8 13 13 C 1.38298 * 120.91031 * 0.02562 * 12 11 10 14 14 Cl 1.73602 * 120.50743 * 180.02562 * 13 12 11 15 15 C 1.52999 * 109.46959 * 240.00164 * 2 1 3 16 16 H 1.09000 * 109.46781 * 300.00077 * 15 2 1 17 17 C 1.52998 * 109.47136 * 179.97438 * 15 2 1 18 18 N 1.46500 * 109.47125 * 59.99786 * 15 2 1 19 19 C 1.36937 * 120.00236 * 205.00058 * 18 15 2 20 20 H 1.08006 * 119.99555 * 0.02562 * 19 18 15 21 21 C 1.38811 * 120.00349 * 179.97438 * 19 18 15 22 22 N 1.31615 * 119.99836 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 120.00010 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.46969 * 90.00549 * 23 21 19 25 25 H 1.48503 * 109.47082 * 209.99866 * 23 21 19 26 26 H 1.48501 * 109.47443 * 330.00404 * 23 21 19 27 27 H 1.09000 * 109.47437 * 180.02562 * 1 2 3 28 28 H 1.09007 * 109.46901 * 299.99672 * 1 2 3 29 29 H 1.08996 * 109.47798 * 59.99908 * 1 2 3 30 30 H 0.97000 * 119.99677 * 95.00259 * 4 2 1 31 31 H 1.07999 * 119.54514 * 179.72514 * 10 8 7 32 32 H 1.07998 * 119.54256 * 180.02562 * 12 11 10 33 33 H 1.08995 * 109.47195 * 300.00048 * 17 15 2 34 34 H 1.09007 * 109.46952 * 60.00070 * 17 15 2 35 35 H 1.09000 * 109.46911 * 179.97438 * 17 15 2 36 36 H 0.97005 * 120.00194 * 24.99882 * 18 15 2 37 37 H 0.97003 * 120.00187 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1471 -0.0183 2.3571 6 8 1.8577 1.1607 2.4118 7 6 2.6409 -0.7159 3.5654 8 6 1.7536 -1.3454 4.4461 9 17 0.0448 -1.3241 4.1406 10 6 2.2592 -1.9849 5.5632 11 7 3.5550 -2.0059 5.8029 12 6 4.4251 -1.4263 5.0006 13 6 4.0084 -0.7638 3.8604 14 17 5.1637 -0.0046 2.8104 15 6 2.0400 -0.7212 -1.2493 16 1 1.6766 -1.7489 -1.2492 17 6 3.5699 -0.7207 -1.2496 18 7 1.5516 -0.0306 -2.4454 19 6 1.4207 -0.7137 -3.6250 20 1 1.6772 -1.7617 -3.6734 21 6 0.9575 -0.0594 -4.7582 22 7 0.6444 1.2176 -4.6991 23 14 0.7797 -0.9911 -6.3675 24 1 -0.5822 -1.5771 -6.4523 25 1 0.9893 -0.0594 -7.5047 26 1 1.7905 -2.0776 -6.4248 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 2.2490 -1.6318 1.1525 31 1 1.5824 -2.4698 6.2512 32 1 5.4780 -1.4694 5.2367 33 1 3.9329 0.3071 -1.2498 34 1 3.9337 -1.2343 -0.3596 35 1 3.9332 -1.2349 -2.1394 36 1 1.3208 0.9106 -2.4018 37 1 0.3211 1.6749 -5.4911 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725109498.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:15:08 Heat of formation + Delta-G solvation = -1.897812 kcal Electronic energy + Delta-G solvation = -23649.000212 eV Core-core repulsion = 19899.530360 eV Total energy + Delta-G solvation = -3749.469852 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.060 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -41.10630 -39.50480 -37.28780 -37.05202 -36.79761 -34.07048 -33.16897 -31.67830 -31.55189 -29.55026 -28.43187 -25.55024 -24.17726 -24.02855 -22.82444 -20.87341 -20.19360 -18.44081 -17.72485 -17.44186 -17.13707 -16.27576 -15.55665 -15.08298 -15.04862 -14.72640 -14.52114 -13.96393 -13.68508 -13.41054 -13.13865 -12.90706 -12.85723 -12.46892 -12.31795 -12.02028 -11.92394 -11.74142 -11.43977 -11.24130 -11.01205 -10.86057 -10.77874 -10.62086 -10.26162 -10.21291 -9.93722 -9.90830 -9.70627 -9.44697 -9.11825 -8.87913 -7.03177 -5.80995 -3.10881 0.15161 0.15582 1.24830 1.62621 2.31570 2.80373 2.94682 3.40588 3.45976 3.47671 3.76129 4.06420 4.13132 4.29185 4.50196 4.56484 4.91521 5.12108 5.23646 5.44798 5.61077 5.61892 5.69111 5.83699 6.05862 6.10191 6.31905 6.36488 6.45218 6.54451 6.76250 6.84746 6.97445 7.06353 7.40941 7.65178 8.03563 8.36324 9.47979 10.02426 10.37535 11.41278 Molecular weight = 331.06amu Principal moments of inertia in cm(-1) A = 0.018562 B = 0.003211 C = 0.002933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1508.060028 B = 8718.934094 C = 9545.539807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.136 3.864 3 H 0.088 0.912 4 N -0.698 5.698 5 C 0.562 3.438 6 O -0.509 6.509 7 C -0.061 4.061 8 C -0.055 4.055 9 Cl -0.021 7.021 10 C 0.119 3.881 11 N -0.445 5.445 12 C 0.119 3.881 13 C -0.055 4.055 14 Cl -0.019 7.019 15 C 0.170 3.830 16 H 0.051 0.949 17 C -0.164 4.164 18 N -0.717 5.717 19 C -0.240 4.240 20 H 0.071 0.929 21 C -0.010 4.010 22 N -0.930 5.930 23 Si 0.907 3.093 24 H -0.290 1.290 25 H -0.292 1.292 26 H -0.282 1.282 27 H 0.052 0.948 28 H 0.047 0.953 29 H 0.083 0.917 30 H 0.399 0.601 31 H 0.179 0.821 32 H 0.179 0.821 33 H 0.047 0.953 34 H 0.035 0.965 35 H 0.055 0.945 36 H 0.386 0.614 37 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.613 -7.596 22.235 24.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.032 3.968 3 H 0.107 0.893 4 N -0.348 5.348 5 C 0.344 3.656 6 O -0.384 6.384 7 C -0.073 4.073 8 C -0.085 4.085 9 Cl 0.008 6.992 10 C -0.039 4.039 11 N -0.154 5.154 12 C -0.039 4.039 13 C -0.085 4.085 14 Cl 0.010 6.990 15 C 0.059 3.941 16 H 0.069 0.931 17 C -0.224 4.224 18 N -0.359 5.359 19 C -0.371 4.371 20 H 0.089 0.911 21 C -0.207 4.207 22 N -0.578 5.578 23 Si 0.738 3.262 24 H -0.217 1.217 25 H -0.218 1.218 26 H -0.208 1.208 27 H 0.071 0.929 28 H 0.067 0.933 29 H 0.101 0.899 30 H 0.234 0.766 31 H 0.196 0.804 32 H 0.196 0.804 33 H 0.066 0.934 34 H 0.054 0.946 35 H 0.074 0.926 36 H 0.220 0.780 37 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 5.627 -7.191 22.690 24.458 hybrid contribution -0.365 -0.114 -1.783 1.823 sum 5.262 -7.304 20.907 22.763 Atomic orbital electron populations 1.22053 0.94520 1.01978 1.02520 1.21470 0.94692 0.97653 0.82951 0.89349 1.46010 1.65581 1.13944 1.09237 1.17671 0.78689 0.86749 0.82522 1.90859 1.48983 1.14464 1.84070 1.20427 0.91983 0.97488 0.97442 1.22176 0.87785 1.01201 0.97367 1.98451 1.08492 1.96979 1.95289 1.22947 0.92139 0.95080 0.93734 1.67854 1.02327 1.16462 1.28750 1.22953 1.00930 0.91847 0.88135 1.22195 0.89985 1.00436 0.95918 1.98459 1.56935 1.79363 1.64218 1.20379 0.92187 0.95576 0.85964 0.93070 1.22448 0.98946 1.01159 0.99876 1.42280 1.78217 1.10674 1.04749 1.19179 1.36970 0.93871 0.87071 0.91145 1.24735 1.01955 0.95950 0.98046 1.69659 1.50522 1.08607 1.29005 0.86205 0.77774 0.78589 0.83666 1.21710 1.21789 1.20783 0.92912 0.93349 0.89854 0.76643 0.80409 0.80385 0.93365 0.94620 0.92562 0.78012 0.93419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.56 9.33 37.16 0.35 -2.21 16 2 C 0.14 2.25 2.21 -67.93 -0.15 2.10 16 3 H 0.09 1.65 7.58 -51.93 -0.39 1.25 16 4 N -0.70 -9.45 4.38 -54.70 -0.24 -9.69 16 5 C 0.56 8.02 5.60 -12.26 -0.07 7.96 16 6 O -0.51 -9.16 16.77 5.35 0.09 -9.07 16 7 C -0.06 -0.70 5.67 -104.60 -0.59 -1.30 16 8 C -0.06 -0.55 6.38 -38.91 -0.25 -0.80 16 9 Cl -0.02 -0.22 28.17 -51.86 -1.46 -1.68 16 10 C 0.12 0.96 10.98 -17.55 -0.19 0.76 16 11 N -0.45 -3.86 10.33 -13.24 -0.14 -4.00 16 12 C 0.12 0.97 10.98 -17.55 -0.19 0.78 16 13 C -0.06 -0.56 6.38 -38.91 -0.25 -0.81 16 14 Cl -0.02 -0.20 28.17 -51.86 -1.46 -1.66 16 15 C 0.17 3.13 2.52 -67.93 -0.17 2.96 16 16 H 0.05 0.94 8.08 -51.93 -0.42 0.52 16 17 C -0.16 -2.82 9.33 37.16 0.35 -2.47 16 18 N -0.72 -16.99 4.43 -53.43 -0.24 -17.23 16 19 C -0.24 -6.36 9.93 -15.06 -0.15 -6.51 16 20 H 0.07 1.81 7.83 -52.48 -0.41 1.40 16 21 C -0.01 -0.29 5.50 -17.43 -0.10 -0.39 16 22 N -0.93 -27.42 13.06 55.49 0.72 -26.70 16 23 Si 0.91 21.88 29.55 -169.99 -5.02 16.86 16 24 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 25 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 26 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 27 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.05 0.79 8.14 -51.92 -0.42 0.37 16 29 H 0.08 1.60 7.45 -51.93 -0.39 1.21 16 30 H 0.40 4.53 8.38 -40.82 -0.34 4.19 16 31 H 0.18 0.92 8.06 -52.49 -0.42 0.49 16 32 H 0.18 0.94 8.06 -52.49 -0.42 0.52 16 33 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.03 0.50 7.45 -51.93 -0.39 0.11 16 35 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 36 H 0.39 9.87 7.58 -40.82 -0.31 9.57 16 37 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 352.31 15.07 5.31 5.31 Total: -1.00 -31.03 352.31 -8.17 -39.21 By element: Atomic # 1 Polarization: 12.89 SS G_CDS: -4.32 Total: 8.57 kcal Atomic # 6 Polarization: 1.49 SS G_CDS: -1.42 Total: 0.07 kcal Atomic # 7 Polarization: -57.72 SS G_CDS: 0.11 Total: -57.60 kcal Atomic # 8 Polarization: -9.16 SS G_CDS: 0.09 Total: -9.07 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Atomic # 17 Polarization: -0.42 SS G_CDS: -2.92 Total: -3.34 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -31.03 -8.17 -39.21 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725109498.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.309 kcal (2) G-P(sol) polarization free energy of solvation -31.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds