Wall clock time and date at job start Tue Mar 31 2020 17:15:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.47025 * 2 1 4 4 N 1.46501 * 109.46987 * 120.00137 * 2 1 3 5 5 C 1.34775 * 119.99771 * 274.99642 * 4 2 1 6 6 O 1.21524 * 120.00287 * 0.02562 * 5 4 2 7 7 C 1.48002 * 119.99737 * 180.02562 * 5 4 2 8 8 C 1.39972 * 120.94000 * 269.99962 * 7 5 4 9 9 Cl 1.73602 * 120.51224 * 0.04548 * 8 7 5 10 10 C 1.38295 * 118.98059 * 180.02562 * 8 7 5 11 11 N 1.31795 * 120.91107 * 0.02562 * 10 8 7 12 12 C 1.31786 * 122.09911 * 359.97438 * 11 10 8 13 13 C 1.38298 * 120.91031 * 0.02562 * 12 11 10 14 14 Cl 1.73602 * 120.50743 * 180.02562 * 13 12 11 15 15 C 1.52999 * 109.46959 * 240.00164 * 2 1 3 16 16 H 1.09000 * 109.46781 * 300.00077 * 15 2 1 17 17 C 1.52998 * 109.47136 * 179.97438 * 15 2 1 18 18 N 1.46500 * 109.47125 * 59.99786 * 15 2 1 19 19 C 1.36937 * 120.00236 * 205.00058 * 18 15 2 20 20 H 1.08006 * 119.99555 * 0.02562 * 19 18 15 21 21 C 1.38811 * 120.00349 * 179.97438 * 19 18 15 22 22 N 1.31615 * 119.99836 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 120.00010 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.46969 * 90.00549 * 23 21 19 25 25 H 1.48503 * 109.47082 * 209.99866 * 23 21 19 26 26 H 1.48501 * 109.47443 * 330.00404 * 23 21 19 27 27 H 1.09000 * 109.47437 * 180.02562 * 1 2 3 28 28 H 1.09007 * 109.46901 * 299.99672 * 1 2 3 29 29 H 1.08996 * 109.47798 * 59.99908 * 1 2 3 30 30 H 0.97000 * 119.99677 * 95.00259 * 4 2 1 31 31 H 1.07999 * 119.54514 * 179.72514 * 10 8 7 32 32 H 1.07998 * 119.54256 * 180.02562 * 12 11 10 33 33 H 1.08995 * 109.47195 * 300.00048 * 17 15 2 34 34 H 1.09007 * 109.46952 * 60.00070 * 17 15 2 35 35 H 1.09000 * 109.46911 * 179.97438 * 17 15 2 36 36 H 0.97005 * 120.00194 * 24.99882 * 18 15 2 37 37 H 0.97003 * 120.00187 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1471 -0.0183 2.3571 6 8 1.8577 1.1607 2.4118 7 6 2.6409 -0.7159 3.5654 8 6 1.7536 -1.3454 4.4461 9 17 0.0448 -1.3241 4.1406 10 6 2.2592 -1.9849 5.5632 11 7 3.5550 -2.0059 5.8029 12 6 4.4251 -1.4263 5.0006 13 6 4.0084 -0.7638 3.8604 14 17 5.1637 -0.0046 2.8104 15 6 2.0400 -0.7212 -1.2493 16 1 1.6766 -1.7489 -1.2492 17 6 3.5699 -0.7207 -1.2496 18 7 1.5516 -0.0306 -2.4454 19 6 1.4207 -0.7137 -3.6250 20 1 1.6772 -1.7617 -3.6734 21 6 0.9575 -0.0594 -4.7582 22 7 0.6444 1.2176 -4.6991 23 14 0.7797 -0.9911 -6.3675 24 1 -0.5822 -1.5771 -6.4523 25 1 0.9893 -0.0594 -7.5047 26 1 1.7905 -2.0776 -6.4248 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 2.2490 -1.6318 1.1525 31 1 1.5824 -2.4698 6.2512 32 1 5.4780 -1.4694 5.2367 33 1 3.9329 0.3071 -1.2498 34 1 3.9337 -1.2343 -0.3596 35 1 3.9332 -1.2349 -2.1394 36 1 1.3208 0.9106 -2.4018 37 1 0.3211 1.6749 -5.4911 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725109498.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:15:07 Heat of formation + Delta-G solvation = -22.257024 kcal Electronic energy + Delta-G solvation = -23649.883053 eV Core-core repulsion = 19899.530360 eV Total energy + Delta-G solvation = -3750.352693 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.060 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.96388 -40.60390 -38.34210 -38.06819 -37.78210 -35.68558 -34.19518 -33.32033 -32.24599 -30.98676 -30.15513 -26.49343 -25.91649 -24.88759 -24.21917 -22.03730 -21.63864 -19.60451 -19.23161 -18.48573 -17.96056 -17.46063 -16.65074 -16.58141 -15.85424 -15.79092 -15.72168 -15.35598 -15.29434 -14.86018 -14.69464 -14.10195 -13.70134 -13.64612 -13.45869 -13.26267 -13.04940 -12.95567 -12.79784 -12.71725 -12.61638 -12.30934 -12.23179 -12.14996 -11.80996 -11.62168 -11.49304 -10.99801 -10.98294 -10.83058 -10.28395 -10.14924 -9.01582 -7.91540 -5.20499 -0.64477 -0.52920 0.48001 0.85995 1.19986 1.49641 1.50528 1.58617 1.77757 2.18053 2.58669 3.13073 3.21846 3.33715 3.42885 3.48360 3.74754 3.81069 4.00286 4.14115 4.17028 4.32784 4.50841 4.57507 4.72516 4.85421 4.92253 5.00205 5.01969 5.10860 5.29722 5.41012 5.49970 5.56056 6.26306 6.29069 6.39065 6.91552 7.35966 8.08512 8.32004 9.31859 Molecular weight = 331.06amu Principal moments of inertia in cm(-1) A = 0.018562 B = 0.003211 C = 0.002933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1508.060028 B = 8718.934094 C = 9545.539807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.152 3.848 3 H 0.065 0.935 4 N -0.687 5.687 5 C 0.567 3.433 6 O -0.550 6.550 7 C -0.076 4.076 8 C -0.061 4.061 9 Cl -0.028 7.028 10 C 0.133 3.867 11 N -0.449 5.449 12 C 0.133 3.867 13 C -0.062 4.062 14 Cl -0.029 7.029 15 C 0.169 3.831 16 H 0.062 0.938 17 C -0.153 4.153 18 N -0.729 5.729 19 C -0.232 4.232 20 H 0.080 0.920 21 C -0.074 4.074 22 N -0.969 5.969 23 Si 0.969 3.031 24 H -0.288 1.288 25 H -0.301 1.301 26 H -0.268 1.268 27 H 0.065 0.935 28 H 0.049 0.951 29 H 0.055 0.945 30 H 0.413 0.587 31 H 0.209 0.791 32 H 0.209 0.791 33 H 0.033 0.967 34 H 0.069 0.931 35 H 0.044 0.956 36 H 0.372 0.628 37 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.555 -9.986 24.076 26.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.047 3.953 3 H 0.083 0.917 4 N -0.338 5.338 5 C 0.351 3.649 6 O -0.428 6.428 7 C -0.088 4.088 8 C -0.091 4.091 9 Cl 0.001 6.999 10 C -0.024 4.024 11 N -0.157 5.157 12 C -0.024 4.024 13 C -0.092 4.092 14 Cl 0.000 7.000 15 C 0.060 3.940 16 H 0.080 0.920 17 C -0.213 4.213 18 N -0.369 5.369 19 C -0.364 4.364 20 H 0.098 0.902 21 C -0.266 4.266 22 N -0.620 5.620 23 Si 0.799 3.201 24 H -0.216 1.216 25 H -0.228 1.228 26 H -0.193 1.193 27 H 0.084 0.916 28 H 0.068 0.932 29 H 0.074 0.926 30 H 0.250 0.750 31 H 0.226 0.774 32 H 0.225 0.775 33 H 0.052 0.948 34 H 0.088 0.912 35 H 0.063 0.937 36 H 0.204 0.796 37 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 6.602 -9.656 24.573 27.215 hybrid contribution -0.618 0.578 -2.203 2.360 sum 5.984 -9.078 22.370 24.872 Atomic orbital electron populations 1.21922 0.94672 1.02326 1.01170 1.21012 0.94369 0.96455 0.83432 0.91669 1.45779 1.65253 1.14443 1.08312 1.17999 0.77544 0.86215 0.83126 1.90841 1.50687 1.16423 1.84823 1.20224 0.93052 0.98782 0.96780 1.22262 0.87252 1.01761 0.97820 1.98451 1.09016 1.97045 1.95384 1.23424 0.92383 0.93607 0.93010 1.67997 1.02548 1.16524 1.28647 1.23414 1.02242 0.90031 0.86734 1.22276 0.89136 1.01142 0.96615 1.98458 1.57142 1.79681 1.64685 1.20539 0.92956 0.95613 0.84866 0.91981 1.22289 0.97474 1.00598 1.00957 1.42447 1.78451 1.10232 1.05810 1.19574 1.34733 0.94247 0.87856 0.90180 1.25499 1.03055 0.96766 1.01319 1.69821 1.52620 1.10233 1.29347 0.85202 0.77856 0.77440 0.79625 1.21567 1.22780 1.19301 0.91623 0.93210 0.92632 0.74988 0.77418 0.77474 0.94762 0.91193 0.93720 0.79561 0.94191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.82 9.33 71.98 0.67 -4.15 16 2 C 0.15 5.02 2.21 44.99 0.10 5.12 16 3 H 0.07 2.50 7.58 -2.39 -0.02 2.48 16 4 N -0.69 -17.85 4.38 -445.27 -1.95 -19.80 16 5 C 0.57 15.78 5.60 86.83 0.49 16.27 16 6 O -0.55 -19.93 16.77 -3.79 -0.06 -19.99 16 7 C -0.08 -1.63 5.67 -19.85 -0.11 -1.74 16 8 C -0.06 -1.08 6.38 22.70 0.14 -0.94 16 9 Cl -0.03 -0.53 28.17 -2.72 -0.08 -0.61 16 10 C 0.13 1.72 10.98 84.71 0.93 2.65 16 11 N -0.45 -6.23 10.33 -195.81 -2.02 -8.25 16 12 C 0.13 1.75 10.98 84.71 0.93 2.68 16 13 C -0.06 -1.12 6.38 22.70 0.14 -0.97 16 14 Cl -0.03 -0.57 28.17 -2.72 -0.08 -0.65 16 15 C 0.17 6.13 2.52 44.99 0.11 6.25 16 16 H 0.06 2.15 8.08 -2.39 -0.02 2.13 16 17 C -0.15 -5.08 9.33 71.98 0.67 -4.41 16 18 N -0.73 -34.89 4.43 -322.94 -1.43 -36.32 16 19 C -0.23 -12.28 9.93 84.03 0.83 -11.44 16 20 H 0.08 4.01 7.83 -2.91 -0.02 3.99 16 21 C -0.07 -4.15 5.50 84.86 0.47 -3.68 16 22 N -0.97 -58.61 13.06 21.65 0.28 -58.33 16 23 Si 0.97 45.21 29.55 68.60 2.03 47.24 16 24 H -0.29 -13.26 7.11 99.48 0.71 -12.56 16 25 H -0.30 -14.37 7.11 99.48 0.71 -13.66 16 26 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 27 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 28 H 0.05 1.65 8.14 -2.38 -0.02 1.63 16 29 H 0.05 2.20 7.45 -2.39 -0.02 2.18 16 30 H 0.41 8.51 8.38 -92.71 -0.78 7.74 16 31 H 0.21 1.34 8.06 -2.91 -0.02 1.31 16 32 H 0.21 1.41 8.06 -2.91 -0.02 1.39 16 33 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 34 H 0.07 1.82 7.45 -2.38 -0.02 1.80 16 35 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 36 H 0.37 19.71 7.58 -92.70 -0.70 19.01 16 37 H 0.25 14.74 8.31 -92.71 -0.77 13.97 16 Total: -1.00 -67.70 352.31 1.72 -65.98 By element: Atomic # 1 Polarization: 25.47 SS G_CDS: -0.35 Total: 25.12 kcal Atomic # 6 Polarization: 0.25 SS G_CDS: 5.38 Total: 5.63 kcal Atomic # 7 Polarization: -117.59 SS G_CDS: -5.12 Total: -122.71 kcal Atomic # 8 Polarization: -19.93 SS G_CDS: -0.06 Total: -19.99 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 2.03 Total: 47.24 kcal Atomic # 17 Polarization: -1.11 SS G_CDS: -0.15 Total: -1.26 kcal Total: -67.70 1.72 -65.98 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725109498.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.722 kcal (2) G-P(sol) polarization free energy of solvation -67.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds